>SSJ205 (SSJ205Q) /CSM/SS/SSJ2-A/SSJ205Q.Seq.d/
XXXXXXXXXXTGAGGGGGGAGAGCGGCAATGTTGGCGCTAGAAGTTTTACAGGGTTTTAG
AATGGANGGCGTCTGATATTTCTTCAAGTATTTCAATTGAATTTGATAAAGCAAATCATA
AATCAAGATAAATTAAAAAAAAAAAATCAAAAAAACAAAAA

---rgesgnvgarsftgf*NGXRLIFLQVFQLNLIKQIINQDKLKKKNQKNK

Frame A:
---eggerqcwr*kfyrvlewxasdisssisiefdkanhksr*ikkkkskkqk


Frame B:
---rgesgnvgarsftgf*NGXRLIFLQVFQLNLIKQIINQDKLKKKNQKNK


Frame C:
---ggraamlalevlqgfrmxgv*yffkyfn*i**sks*ikin*kkkikktk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ205 (SSJ205Q) /CSM/SS/SSJ2-A/SSJ205Q.Seq.d/                        240   5e-63
SSD532 (SSD532Q) /CSM/SS/SSD5-B/SSD532Q.Seq.d/                        145   2e-34
SSC875 (SSC875Q) /CSM/SS/SSC8-D/SSC875Q.Seq.d/                        145   2e-34
VSH324 (VSH324Q) /CSM/VS/VSH3-A/VSH324Q.Seq.d/                         44   6e-04
CFJ348 (CFJ348Q) /CSM/CF/CFJ3-B/CFJ348Q.Seq.d/                         38   0.037
VHG213 (VHG213Q) /CSM/VH/VHG2-A/VHG213Q.Seq.d/                         36   0.15
VFJ314 (VFJ314Q) /CSM/VF/VFJ3-A/VFJ314Q.Seq.d/                         36   0.15
VFE412 (VFE412Q) /CSM/VF/VFE4-A/VFE412Q.Seq.d/                         36   0.15
VFE235 (VFE235Q) /CSM/VF/VFE2-B/VFE235Q.Seq.d/                         36   0.15
VFC566 (VFC566Q) /CSM/VF/VFC5-C/VFC566Q.Seq.d/                         36   0.15

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC137030|AC137030.1 Rattus norvegicus clone CH230-unknown, WORKING DRAFT SEQUENCE.    36   0.087  3
AC097001|AC097001.2 Rattus norvegicus clone RP31-358N14 strain Brown Norway, WORKING DRAFT SEQUENCE, 6 ordered pieces.    46   0.14   1
AC144395|AC144395.1 Rattus norvegicus clone CH230-194G3, *** SEQUENCING IN PROGRESS ***, 61 unordered pieces.    46   0.14   1
AC097132|AC097132.7 Rattus norvegicus clone CH230-60F8, WORKING DRAFT SEQUENCE, 4 unordered pieces.    46   0.14   1
CB734833|CB734833.1 AMGNNUC:SRPG2-00006-B9-A srpg2 (10238) Rattus norvegicus cDNA clone srpg2-00006-b9 5', mRNA sequence.    46   0.14   1
CB548029|CB548029.1 AMGNNUC:CR3-00006-F5-A Colon rat 3 (10415) Rattus norvegicus cDNA clone cr3-00006-f5 5', mRNA sequence.    46   0.14   1
CF113298|CF113298.1 Shultzomica06549 Rat lung airway and parenchyma cDNA libraries Rattus norvegicus cDNA clone CP3198 5', mRNA sequence.    46   0.14   1
AL357494|AL357494.2 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-544D16.    32   0.18   5
AP003889|AP003889.2 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1213_A07, WORKING DRAFT SEQUENCE, 1 ordered pieces.    36   0.51   2
AP003801|AP003801.1 Oryza sativa genomic DNA, chromosome 7, BAC clone:OJ1036_H07, WORKING DRAFT SEQUENCE, 1 ordered pieces.    44   0.55   1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 124,037,094

 psg: 0.86  gvh: 0.40  alm: 0.40  top: 0.73  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SSJ205 is cyt

>SSJ205Z.Seq
----------TGAGGGGGGAGAGCGGCAATGTTGGCGCTAGAAGTTTTACAGGGTTTTAG
AATGGANGGCGTCTGATATTTCTTCAAGTATTTCAATTGAATTTGATAAAGCAAATCATA
AATCAAGATAAATTAAAAAAAAAAAATCAAAAAAACAAAAA