>SSJ192 (SSJ192Q) /CSM/SS/SSJ1-D/SSJ192Q.Seq.d/
AAAACATTTATCAAAATCAAAATTATTAATTTCAAATAAATTAAAAGATAGAAGAAAATG
ACTGATAATTGGGATAAAGAAAAACTTGCTAAAAAAGCAGCAGAAGGTTTAAAGAATGCC
AGGAATACTGCATCCTCATATGCCTCTGGAATAAATGCATCAAAAGATCAATTAAATTCA
AATTTCAAAAATATTAAAGAGAACATTTCAAGCAATTTGAATAATGCCAAACATACTATT
GAAGAAAATGTCCATAATGCTCAAAGAACCGGTTATCCACCAAAGGTACCAGCTCCTGGA
TCAAATAAATTCATTGGTTTCCTAGCTTTGGGTGTATTTGGTTTATTTGCTTGGAAATTC
TATGAAGGAAAGAAATACAAAGAGAATGAACAAAAATTAATTAAACAAAAACATTAAAAA
AAAAAAAAAAAAAAAATTTAGTTTTTGTATAAAAAAAAAAC

ktfikikiinfk*ikr*KKMTDNWDKEKLAKKAAEGLKNARNTASSYASGINASKDQLNS
NFKNIKENISSNLNNAKHTIEENVHNAQRTGYPPKVPAPGSNKFIGFLALGVFGLFAWKF
YEGKKYKENEQKLIKQKH*kkkkkki*flykkk

Frame A:
ktfikikiinfk*ikr*KKMTDNWDKEKLAKKAAEGLKNARNTASSYASGINASKDQLNS
NFKNIKENISSNLNNAKHTIEENVHNAQRTGYPPKVPAPGSNKFIGFLALGVFGLFAWKF
YEGKKYKENEQKLIKQKH*kkkkkki*flykkk


Frame B:
khlskskllisnklkdrrk*liigikknllkkqqkv*rmpgilhphmple*mhqkin*iq
iskilkrtfqai*impnillkkmsimlkepvihqryqlldqinslvs*lwvylvyllgns
mkerntkrmnkn*lnknikkkkkkkfsfcikkk


Frame C:
niyqnqny*fqin*kieend**lg*rktc*kssrrfkecqeyciliclwnkcikrsikfk
fqky*rehfkqfe*cqtyy*rkcp*csknrlstkgtsswik*ihwfpsfgciwficleil
*rkeiqre*tkin*tktlkkkkkknlvfv*kkn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ192 (SSJ192Q) /CSM/SS/SSJ1-D/SSJ192Q.Seq.d/                        632   e-180
SSM768 (SSM768Q) /CSM/SS/SSM7-C/SSM768Q.Seq.d/                        624   e-178
SSK829 (SSK829Q) /CSM/SS/SSK8-B/SSK829Q.Seq.d/                        624   e-178
SSJ861 (SSJ861Q) /CSM/SS/SSJ8-C/SSJ861Q.Seq.d/                        624   e-178
SSJ338 (SSJ338Q) /CSM/SS/SSJ3-B/SSJ338Q.Seq.d/                        624   e-178
SSJ242 (SSJ242Q) /CSM/SS/SSJ2-B/SSJ242Q.Seq.d/                        624   e-178
SSI830 (SSI830Q) /CSM/SS/SSI8-B/SSI830Q.Seq.d/                        624   e-178
SSI657 (SSI657Q) /CSM/SS/SSI6-C/SSI657Q.Seq.d/                        624   e-178
SSI547 (SSI547Q) /CSM/SS/SSI5-B/SSI547Q.Seq.d/                        624   e-178
SSH508 (SSH508Q) /CSM/SS/SSH5-A/SSH508Q.Seq.d/                        624   e-178

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38   3e-06  12
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    32   2e-05  10
AC129092|AC129092.12 Medicago truncatula clone mth2-17n16, WORKING DRAFT SEQUENCE, 5 unordered pieces.    38   3e-05  8
AR409405|AR409405.1 Sequence 1 from patent US 6632935.             38   2e-04  13
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.     38   2e-04  13
AP001674|AP001674.1 Homo sapiens genomic DNA, chromosome 21q, section 18/105.    38   0.001  11
AC129017|AC129017.4 Mus musculus chromosome 15 clone RP24-414A24, complete sequence.    44   0.003  7
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    32   0.005  11
AC132766|AC132766.3 Rattus norvegicus clone CH230-235I13, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    32   0.006  8
AV234950|AV234950.1 Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732401F15, 3' end partial sequence.    52   0.007  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017308_577(AE017308|pid:none) Mycoplasma mobile 163K complete ...    37   0.16
(Q80WK7) RecName: Full=Equilibrative nucleoside transporter 3; A...    35   0.62
BC078678_1(BC078678|pid:none) Rattus norvegicus solute carrier f...    35   0.62
AL844507_240(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    35   0.81
(Q54VF4) RecName: Full=Putative uncharacterized protein DDB_G028...    33   2.4
EF145887_1(EF145887|pid:none) Populus trichocarpa clone WS0114_A...    33   3.1
CP000768_40(CP000768|pid:none) Campylobacter jejuni subsp. doyle...    33   3.1
AC116305_7(AC116305|pid:none) Dictyostelium discoideum chromosom...    33   4.0
AM458473_6(AM458473|pid:none) Vitis vinifera contig VV78X094999....    33   4.0
AC117072_1(AC117072|pid:none) Dictyostelium discoideum chromosom...    33   4.0

 psg: 0.58  gvh: 0.44  alm: 0.31  top: 0.47  tms: 0.07  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: nuclear
	 24.0 %: mitochondrial
	 16.0 %: cytoplasmic
	 12.0 %: endoplasmic reticulum
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SSJ192 is nuc

>SSJ192E.Seq
AAAACATTTATCAAAATCAAAATTATTAATTTCAAATAAATTAAAAGATAGAAGAAAATG
ACTGATAATTGGGATAAAGAAAAACTTGCTAAAAAAGCAGCAGAAGGTTTAAAGAATGCC
AGGAATACTGCATCCTCATATGCCTCTGGAATAAATGCATCAAAAGATCAATTAAATTCA
AATTTCAAAAATATTAAAGAGAACATTTCAAGCAATTTGAATAATGCCAAACATACTATT
GAAGAAAATGTCCATAATGCTCAAAGAACCGGTTATCCACCAAAGGTACCAGCTCCTGGA
TCAAATAAATTCATTGGTTTCCTAGCTTTGGGTGTATTTGGTTTATTTGCTTGGAAATTC
TATGAAGGAAAGAAATACAAAGAGAATGAACAAAAATTAATTAAACAAAAACATTAAAAA
AAAAAAAAAAAAAAAATTTAGTTTTTGTATAAAAAAAAAAC