SSJ178
Library SS
(Link to library)
Clone ID SSJ178
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16415-1
Original site URL
Representative seq. ID SSJ178F
(Link to Original site)
Representative DNA sequence
>SSJ178 (SSJ178Q) /CSM/SS/SSJ1-D/SSJ178Q.Seq.d/
AGGATGTAGATTTAGAATTTTTGGGTCAAAAGACTCAAGGTTTCTCTGGTGCAGATTTAA
CTGAAATTTGTCAACGTGCCTGTAAATTAGCTATTCGTGAATCCATTGAAAAGGATATTG
AATCCACCAAAGCCCGTCAAGAATCTGGTGATACCAAGATGGAAGATGACTCTGTCGATC
CAGTACCAGAAATTACTCGTGATCACTTCCAAGAAGCCATGAGATCTGCTCGTCGTTCTG
TATCCGATAATGATATTAGAAAATATGAAAGCTTTGCTCAAACTTTAGTTCAATCAAGAG
GTCTTGGTAATAATTTCAAATTCCCAGATCAAGAATCTTCAGGTCAATTCAATCAAGATC
AATCTGATGATCTTTTCAGTAATTAAAAAAAAAAAATATATATTTTAATTAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAXXXXXXXXXX
sequence update 1998.12.21
Translated Amino Acid sequence
DVDLEFLGQKTQGFSGADLTEICQRACKLAIRESIEKDIESTKARQESGDTKMEDDSVDP
VPEITRDHFQEAMRSARRSVSDNDIRKYESFAQTLVQSRGLGNNFKFPDQESSGQFNQDQ
SDDLFSN*kkkiyilikkkkkkkkkk---


Translated Amino Acid sequence (All Frames)
Frame A:
rm*i*nfwvkrlkvslvqi*lkfvnvpvn*lfvnplkrilnppkpvknlviprwkmtlsi
qyqkllvitskkp*dllvvlypimilenmkallkl*fnqevlviisnsqiknlqvnsiki
nlmifsvikkkkyif*lkkkkkkkkk---


Frame B:
gcrfrifgskdsrflwcrfn*nlstcl*isys*ih*kgy*ihqspsriw*yqdgr*lcrs
strnys*slprsheicssfcir**y*ki*klcsnfssikrsw**fqiprsrifrsiqsrs
i**sfq*lkkkniyfn*kkkkkkkkk---


Frame C:
DVDLEFLGQKTQGFSGADLTEICQRACKLAIRESIEKDIESTKARQESGDTKMEDDSVDP
VPEITRDHFQEAMRSARRSVSDNDIRKYESFAQTLVQSRGLGNNFKFPDQESSGQFNQDQ
SDDLFSN*kkkiyilikkkkkkkkkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSJ178 (SSJ178Q) /CSM/SS/SSJ1-D/SSJ178Q.Seq.d/ 761 0.0
SLG766 (SLG766Q) /CSM/SL/SLG7-C/SLG766Q.Seq.d/ 745 0.0
AHL112 (AHL112Q) /CSM/AH/AHL1-A/AHL112Q.Seq.d/ 733 0.0
AHI573 (AHI573Q) /CSM/AH/AHI5-D/AHI573Q.Seq.d/ 722 0.0
CHK459 (CHK459Q) /CSM/CH/CHK4-C/CHK459Q.Seq.d/ 720 0.0
VSI623 (VSI623Q) /CSM/VS/VSI6-A/VSI623Q.Seq.d/ 716 0.0
CHG354 (CHG354Q) /CSM/CH/CHG3-C/CHG354Q.Seq.d/ 714 0.0
VHJ302 (VHJ302Q) /CSM/VH/VHJ3-A/VHJ302Q.Seq.d/ 708 0.0
AHP625 (AHP625Q) /CSM/AH/AHP6-B/AHP625Q.Seq.d/ 708 0.0
AFH318 (AFH318Q) /CSM/AF/AFH3-A/AFH318Q.Seq.d/ 708 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U83085|U83085.2 Dictyostelium discoideum cell division cycle protein 48 (cdcD) mRNA, complete cds. 761 0.0 2
BI505437|BI505437.1 BB170025B10F03 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170025B10F03 5', mRNA sequence. 84 4e-25 3
BI506081|BI506081.1 BB170016B20F02 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170016B20F02 5', mRNA sequence. 84 1e-24 3
BI505199|BI505199.1 BB170019B10G02 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170019B10G02 5', mRNA sequence. 76 3e-22 3
AV201432|AV201432.1 Caenorhabditis elegans cDNA clone:yk388a11 : 5' end, single read. 68 2e-12 3
CB403350|CB403350.1 OSTR005D4_1 AD-wrmcDNA Caenorhabditis elegans cDNA, mRNA sequence. 68 5e-12 3
BJ152258|BJ152258.1 Caenorhabditis elegans cDNA clone:yk1305b01 : 3' end, single read. 68 7e-12 3
BJ141594|BJ141594.1 Caenorhabditis elegans cDNA clone:yk1172d06 : 3' end, single read. 68 7e-12 3
BJ155032|BJ155032.1 Caenorhabditis elegans cDNA clone:yk1337g04 : 3' end, single read. 68 7e-12 3
BJ137573|BJ137573.1 Caenorhabditis elegans cDNA clone:yk1125g02 : 3' end, single read. 68 7e-12 3
dna update 2004. 2.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U83085_1(U83085|pid:none) Dictyostelium discoideum cell division... 254 5e-67
(P54811) RecName: Full=Transitional endoplasmic reticulum ATPase... 166 3e-40
(P54812) RecName: Full=Transitional endoplasmic reticulum ATPase... 161 6e-39
AB248089_1(AB248089|pid:none) Haemaphysalis longicornis VCP gene... 157 8e-38
BC114306_1(BC114306|pid:none) Danio rerio zgc:136908, mRNA (cDNA... 156 2e-37
AF047037_1(AF047037|pid:none) Drosophila melanogaster transition... 154 1e-36
AY576993_1(AY576993|pid:none) Danio rerio clone RK103A4E09 valos... 154 1e-36
EF553535_1(EF553535|pid:none) Paralichthys olivaceus cell divisi... 153 2e-36
(Q7KN62) RecName: Full=Transitional endoplasmic reticulum ATPase... 152 3e-36
AE013599_1006(AE013599|pid:none) Drosophila melanogaster chromos... 152 3e-36
protein update 2009. 6.13
PSORT

psg: 0.75 gvh: 0.38 alm: 0.55 top: 0.53 tms: 0.00 mit: 0.08 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
24.0 %: cytoplasmic
12.0 %: cytoskeletal
12.0 %: mitochondrial
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SSJ178 is nuc

5' end seq. ID SSJ178F
5' end seq.
>SSJ178F.Seq
AGGATGTAGATTTAGAATTTTTGGGTCAAAAGACTCAAGGTTTCTCTGGTGCAGATTTAA
CTGAAATTTGTCAACGTGCCTGTAAATTAGCTATTCGTGAATCCATTGAAAAGGATATTG
AATCCACCAAAGCCCGTCAAGAATCTGGTGATACCAAGATGGAAGATGACTCTGTCGATC
CAGTACCAGAAATTACTCGTGATCACTTCCAAGAAGCCATGAGATCTGCTCGTCGTTCTG
TATCCGATAATGATATTAGAAAATATGAAAGCTTTGCTCAAACTTTAGTTCAATCAAGAG
GTCTTGGTAATAATTTCAAATTCCCAGATCAAGAATCTTCAGGTCAATTCAATCAAGATC
AATCTGATGATCTTTTCAGTAATTAAAAAAAAAAAATATATATTTTAATTAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA----------
Length of 5' end seq. 441
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -