SSJ176
Library SS
(Link to library)
Clone ID SSJ176
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10905-1
Original site URL
Representative seq. ID SSJ176E
(Link to Original site)
Representative DNA sequence
>SSJ176 (SSJ176Q) /CSM/SS/SSJ1-D/SSJ176Q.Seq.d/
GAAAAGTTTGAGATGTTTTTGGCCGTGTCACCCCCACAATTCGTTTCAACAGATCGTACA
GGCGACATTGACGCATTGGTCAGCGCTATGAATGGTGCCACCAAAACTATTTGCATCTCT
GTTATGGACTACATCCCTGCATCCTTATACAATTCACCAACACTTTTGGCCCAGTGATGG
GATTAAACCTCCGTGCTGCTGCCTACAATCGTGGTGTTCAAGTTCGTATGTTAATCAGTC
ATTGGAATCACACAAACTATGCTATTCCTCAATGGCTACATTCACTAGATCAGGTGAACA
ATATCGATGTTCGTTGGTTTGTCGTCCCAGATTTCCCTAATGAACCACAAGTTCCATTCA
CTAGAGTTAATCATGCTAAATATATGGTTACTGATGAACAATCATATGTTGGTACTTCAA
ATTGGTCTGAAGATTATTATACAAATACTGGTGGTCTCTCTTATAATATTTACAATGATG
CCCCCCTTTCTCAACTTCAATCAATTTTTGATCGTGATTGGAATTCACCATATTCATTCC
CAGTTACAACTTATTAAAAAAAATAATAATAATAATAATTAAGATATAGA
sequence update 1998. 1. 6
Translated Amino Acid sequence
kv*dvfgrvtptirfnrsyrrh*RIGQRYEWCHQNYLHLCYGLHPCILIQFTNTFGPVMG
LNLRAAAYNRGVQVRMLISHWNHTNYAIPQWLHSLDQVNNIDVRWFVVPDFPNEPQVPFT
RVNHAKYMVTDEQSYVGTSNWSEDYYTNTGGLSYNIYNDAPLSQLQSIFDRDWNSPYSFP
VTTY*kk*****lryr


Translated Amino Acid sequence (All Frames)
Frame A:
ekfemflavsppqfvstdrtgdidalvsamngatkticisvmdyipaslynsptllaq*w
d*tsvllptivvfkfvc*svigitqtmlflngyih*ir*tismfvglssqislmnhkfhs
lelimlniwllmnnhmlvlqiglkiiiqilvvsliiftmmppflnfnqflivigihhihs
qlqlikknnnnnn*di


Frame B:
kslrcfwpchphnsfqqivqatlthwsal*mvppklfasllwttslhpytihqhfwpsdg
ikppccclqswcsssyvnqsleshklcyssmatftrsgeqyrcslvcrprfp**ttssih
*s*sc*iygy**tiicwyfklv*rllykywwsll*ylq*cppfstsinf*s*leftifip
synllkkiiiiiiki*


Frame C:
kv*dvfgrvtptirfnrsyrrh*RIGQRYEWCHQNYLHLCYGLHPCILIQFTNTFGPVMG
LNLRAAAYNRGVQVRMLISHWNHTNYAIPQWLHSLDQVNNIDVRWFVVPDFPNEPQVPFT
RVNHAKYMVTDEQSYVGTSNWSEDYYTNTGGLSYNIYNDAPLSQLQSIFDRDWNSPYSFP
VTTY*kk*****lryr


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSJ176 (SSJ176Q) /CSM/SS/SSJ1-D/SSJ176Q.Seq.d/ 1100 0.0
AHQ682 (AHQ682Q) /CSM/AH/AHQ6-D/AHQ682Q.Seq.d/ 969 0.0
SSM816 (SSM816Q) /CSM/SS/SSM8-A/SSM816Q.Seq.d/ 963 0.0
AFO166 (AFO166Q) /CSM/AF/AFO1-C/AFO166Q.Seq.d/ 876 0.0
SLJ286 (SLJ286Q) /CSM/SL/SLJ2-D/SLJ286Q.Seq.d/ 486 e-136
VFC471 (VFC471Q) /CSM/VF/VFC4-C/VFC471Q.Seq.d/ 100 5e-20
VFA112 (VFA112Q) /CSM/VF/VFA1-A/VFA112Q.Seq.d/ 100 5e-20
VFH687 (VFH687Q) /CSM/VF/VFH6-D/VFH687Q.Seq.d/ 34 2.3
VFC190 (VFC190Q) /CSM/VF/VFC1-D/VFC190Q.Seq.d/ 34 2.3
VFB347 (VFB347Q) /CSM/VF/VFB3-B/VFB347Q.Seq.d/ 34 2.3

own update 2004. 8. 8
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M19469|M19469.1 Dictyostelium discoideum 109 gene 3, complete cds. 100 8e-23 3
AF409138|AF409138.1 Lumpy skin disease virus isolate Neethling vaccine LW 1959, complete genome. 34 0.083 2
BU917598|BU917598.1 kb30h10.y1 Brugia malayi 2D L3 pAMP1 v2 Brugia malayi cDNA 5' similar to TR:O17405 O17405 F09G2.8 PROTEIN. [1] ;, mRNA sequence. 46 0.56 1
AC112102|AC112102.5 Rattus norvegicus clone CH230-235L23, WORKING DRAFT SEQUENCE, 2 unordered pieces. 44 2.2 1
AC109066|AC109066.4 Rattus norvegicus clone CH230-176M5, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 44 2.2 1
AC116325|AC116325.5 Mus musculus chromosome 10 clone RP23-295K3, complete sequence. 44 2.2 1
AC132963|AC132963.3 Rattus norvegicus clone CH230-149B4, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces. 44 2.2 1
BH264335|BH264335.1 CH230-55F7.TV CHORI-230 Segment 1 Rattus norvegicus genomic clone CH230-55F7, DNA sequence. 30 2.4 3
AU116189|AU116189.1 Caenorhabditis elegans cDNA clone:yk741f7 : 3' end, single read. 34 5.7 2
AU115694|AU115694.1 Caenorhabditis elegans cDNA clone:yk735f6 : 3' end, single read. 34 5.7 2
dna update 2004. 2.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54SA1) RecName: Full=Phospholipase D Z; EC=3.1.4.4; A... 269 6e-97
(Q54K50) RecName: Full=Phospholipase D Y; EC=3.1.4.4; A... 207 2e-69
M19469_1(M19469|pid:none) Dictyostelium discoideum 109 gene 3, c... 197 1e-66
AF026215_7(AF026215|pid:none) Caenorhabditis elegans cosmid F09G... 121 2e-34
(O17405) RecName: Full=Probable phospholipase D F09G2.8; ... 121 2e-34
BC161906_1(BC161906|pid:none) Rattus norvegicus phospholipase D ... 115 3e-31
(P18377) RecName: Full=Protein K4; AltName: Full=Protein K3; &A... 117 3e-31
AE014134_3456(AE014134|pid:none) Drosophila melanogaster chromos... 115 6e-31
AY678275_50(AY678275|pid:none) Vaccinia virus strain LC16m8, com... 115 6e-31
AF482758_44(AF482758|pid:none) Cowpox virus strain Brighton Red,... 115 1e-30
protein update 2009. 7. 8
PSORT

psg: 0.87 gvh: 0.49 alm: 0.43 top: 0.43 tms: 0.00 mit: 0.39 mip: 0.09
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: mitochondrial
24.0 %: nuclear
20.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: extracellular, including cell wall
4.0 %: peroxisomal

>> prediction for SSJ176 is mit

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSJ176E
Full length Seq.
>SSJ176E.Seq
GAAAAGTTTGAGATGTTTTTGGCCGTGTCACCCCCACAATTCGTTTCAACAGATCGTACA
GGCGACATTGACGCATTGGTCAGCGCTATGAATGGTGCCACCAAAACTATTTGCATCTCT
GTTATGGACTACATCCCTGCATCCTTATACAATTCACCAACACTTTTGGCCCAGTGATGG
GATTAAACCTCCGTGCTGCTGCCTACAATCGTGGTGTTCAAGTTCGTATGTTAATCAGTC
ATTGGAATCACACAAACTATGCTATTCCTCAATGGCTACATTCACTAGATCAGGTGAACA
ATATCGATGTTCGTTGGTTTGTCGTCCCAGATTTCCCTAATGAACCACAAGTTCCATTCA
CTAGAGTTAATCATGCTAAATATATGGTTACTGATGAACAATCATATGTTGGTACTTCAA
ATTGGTCTGAAGATTATTATACAAATACTGGTGGTCTCTCTTATAATATTTACAATGATG
CCCCCCTTTCTCAACTTCAATCAATTTTTGATCGTGATTGGAATTCACCATATTCATTCC
CAGTTACAACTTATTAAAAAAAATAATAATAATAATAATTAAGATATAGA
Length of full length seq. 590