>SSJ174 (SSJ174Q) /CSM/SS/SSJ1-D/SSJ174Q.Seq.d/
XXXXXXXXXXTGCTCTTACAATTCGTTCCAGAGGATTTTGGCCAAACATTGTTGGAAACA
ACCATTATGGGGTCCAACATTGAGAGATGCATCATTCTCTCTTGCTGCTGCCTAAATATG
CTGCCAGGTGAATTCTCAAACTCTGTAATTGAAAACGTTTCAAATCCAACCATCGCCGTC
AAAATGACCACTGAAAATGTTGCTGGTGTTCATTTACCAACTTTTGAGAAAATCTCTGAA
GGTGTCGTTAGCAATTCACAAGAACTTACTGGTCTTTCAAAAGGTGGTCAACAATTAATA
AATCTCGTGAATCACACATTAAAGCTGTCGAAGCTTTAATTGCTCTCGCTTCTTTACAAA
CTGCTTTCATTACATTGGATGAAGTTATTAAATTACAAATAGACGTGTTAATGCAATTGA
ATACGTAGTTAACCCAAAACTTGAAAATACCATCAGTTATATTATTACAGAGTTGGATGA
AAGTGAAAGAGAAGAGTTTTACAGATTGAAGAAAGTTCAAGGTAAAAAGAAGAAAGATTT
GAAAGCAAAAGAAGCACAAAAAGAAGAAAACTCTGCAAATAAAACAATCATGGAACCAGC
CTCTGTTCATAAAGTTAGAAGTCTCATCGATGATGAACCAGAAGATGCTGAATTATTATA
TGAAGATTAAATTTATTTAAAAAAAATAATAAAATAAAATAATAAAATAAAAATAAAAAT
AAATAAATTATAAATAAAAAAAAAAAAAAAAAAAAAA

---LLQFVPEDFGQTLLETTIMGSNIERCIILSCCCLNMLPGEFSNSVIENVSNPTIAVK
MTTENVAGVHLPTFEKISEGVVSNSQELTGLSKGGQQLINLVNHTLKLSKL*llsllykl
lslhwmkllnyk*tc*cn*irs*pkt*kyhqlyyyrvg*k*krrvlqieessr*keerfe
skrstkrrklck*nnhgtslcs*s*kshr**trrc*iii*rlnlfkknnkik**nknknk
*iinkkkkkkk

Frame A:
---altirsrgfwpnivgnnhygvqh*emhhsllllpkyaar*ilklcn*krfksnhrrq
ndh*kccwcsftnf*enl*rcr*qftrtywsfkrwstinksreshikavealialaslqt
afitldeviklqidvlmqlnt*ltqnlkipsvillqswmkvkeksftd*rkfkvkrrki*
kqkkhkkkktlqikqswnqplfiklevssmmnqkmlnyymkikfi*kk**nkiik*k*k*
inyk*kkkkkk


Frame B:
---LLQFVPEDFGQTLLETTIMGSNIERCIILSCCCLNMLPGEFSNSVIENVSNPTIAVK
MTTENVAGVHLPTFEKISEGVVSNSQELTGLSKGGQQLINLVNHTLKLSKL*llsllykl
lslhwmkllnyk*tc*cn*irs*pkt*kyhqlyyyrvg*k*krrvlqieessr*keerfe
skrstkrrklck*nnhgtslcs*s*kshr**trrc*iii*rlnlfkknnkik**nknknk
*iinkkkkkkk


Frame C:
---synsfqrilakhcwkqplwgptlrdasfslaaa*iccqvnsqtl*lktfqiqpspsk
*plkmllvfiyqllrkslkvslaihknllvfqkvvnn**is*ith*scrsfncsrfftnc
fhyig*sy*itnrrvnaieyvvnpklentisyiiteldesereefyrlkkvqgkkkkdlk
akeaqkeensanktimepasvhkvrsliddepedaellyed*iylkkiik*nnkikikin
kl*ikkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ174 (SSJ174Q) /CSM/SS/SSJ1-D/SSJ174Q.Seq.d/                       1015   0.0
SLA588 (SLA588Q) /CSM/SL/SLA5-D/SLA588Q.Seq.d/                        789   0.0
SSD315 (SSD315Q) /CSM/SS/SSD3-A/SSD315Q.Seq.d/                        763   0.0
SSM309 (SSM309Q) /CSM/SS/SSM3-A/SSM309Q.Seq.d/                        745   0.0
SSE424 (SSE424Q) /CSM/SS/SSE4-A/SSE424Q.Seq.d/                        646   0.0
SSB847 (SSB847Q) /CSM/SS/SSB8-B/SSB847Q.Seq.d/                        587   e-166
SSH196 (SSH196Q) /CSM/SS/SSH1-D/SSH196Q.Seq.d/                        573   e-162
SSD517 (SSD517Q) /CSM/SS/SSD5-A/SSD517Q.Seq.d/                        517   e-146
SSF460 (SSF460Q) /CSM/SS/SSF4-C/SSF460Q.Seq.d/                        430   e-119
SSH679 (SSH679Q) /CSM/SS/SSH6-D/SSH679Q.Seq.d/                        206   4e-52

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   337   0.0    13
BI506390|BI506390.1 BB170024A20D04 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170024A20D04 5', mRNA sequence.    36   2e-07  4
AJ297976|AJ297976.1 Suberites domuncula mRNA for vacuolar proton pump protein (vatpd  gene).    46   6e-05  2
CD147641|CD147641.1 ML1-0007T-V150-B09-U.B ML1-0007 Schistosoma mansoni cDNA clone ML1-0007T-V150-B09.B, mRNA sequence.    56   9e-05  2
CD147632|CD147632.1 ML1-0007T-V150-A12-U.B ML1-0007 Schistosoma mansoni cDNA clone ML1-0007T-V150-A12.B, mRNA sequence.    56   1e-04  2
AC087843|AC087843.2 Bos taurus clone RP42-550C12, complete sequence.    44   4e-04  2
CD075945|CD075945.1 MA3-0001U-M333-B05-U.G MA3-0001 Schistosoma mansoni cDNA clone MA3-0001U-M333-B05.G, mRNA sequence.    56   8e-04  1
CD146348|CD146348.1 MG1-0112T-L397-A05-U.B MG1-0112 Schistosoma mansoni cDNA clone MG1-0112T-L397-A05.B, mRNA sequence.    56   8e-04  1
AC137651|AC137651.2 Bos taurus clone RP42-224I3, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44   0.003  3
CF600894|CF600894.1 tac32c12.x1 Hydra EST -IV Hydra magnipapillata cDNA 3' similar to TR:Q9Y688 Q9Y688 VACUOLAR H-ATPASE SUBUNIT D. ;, mRNA sequence.    44   0.006  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q5RCS8) RecName: Full=V-type proton ATPase subunit D;          ...    68   4e-29
AK146129_1(AK146129|pid:none) Mus musculus TIB-55 BB88 cDNA, RIK...    68   4e-29
BC031002_1(BC031002|pid:none) Homo sapiens ATPase, H+ transporti...    68   6e-29
(P39942) RecName: Full=V-type proton ATPase subunit D;          ...    65   2e-28
AK150981_1(AK150981|pid:none) Mus musculus bone marrow macrophag...    65   2e-28
BT081771_1(BT081771|pid:none) Rana catesbeiana clone rcat-evr-50...    65   2e-28
AL928824_3(AL928824|pid:none) Zebrafish DNA sequence from clone ...    64   6e-28
BT043620_1(BT043620|pid:none) Salmo salar clone HM4_3768 ATPase ...    65   8e-28
BT079344_1(BT079344|pid:none) Esox lucius clone eluc-evq-534-179...    65   1e-27
BT077568_1(BT077568|pid:none) Lepeophtheirus salmonis clone lsal...    64   2e-27

 psg: 0.75  gvh: 0.55  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 1.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: peroxisomal
	 20.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for SSJ174 is cyt

>SSJ174Z.Seq
----------TGCTCTTACAATTCGTTCCAGAGGATTTTGGCCAAACATTGTTGGAAACA
ACCATTATGGGGTCCAACATTGAGAGATGCATCATTCTCTCTTGCTGCTGCCTAAATATG
CTGCCAGGTGAATTCTCAAACTCTGTAATTGAAAACGTTTCAAATCCAACCATCGCCGTC
AAAATGACCACTGAAAATGTTGCTGGTGTTCATTTACCAACTTTTGAGAAAATCTCTGAA
GGTGTCGTTAGCAATTCACAAGAACTTACTGGTCTTTCAAAAGGTGGTCAACAATTAATA
AATCTCGTGAATCACACATTAAAGCTGTCGAAGCTTTAATTGCTCTCGCTTCTTTACAAA
CTGCTTTCATTACATTGGATGAAGTTATTAAATTACAAATAGACGTGTTAATGCAATTGA
ATACGTAGTTAACCCAAAACTTGAAAATACCATCAGTTATATTATTACAGAGTTGGATGA
AAGTGAAAGAGAAGAGTTTTACAGATTGAAGAAAGTTCAAGGTAAAAAGAAGAAAGATTT
GAAAGCAAAAGAAGCACAAAAAGAAGAAAACTCTGCAAATAAAACAATCATGGAACCAGC
CTCTGTTCATAAAGTTAGAAGTCTCATCGATGATGAACCAGAAGATGCTGAATTATTATA
TGAAGATTAAATTTATTTAAAAAAAATAATAAAATAAAATAATAAAATAAAAATAAAAAT
AAATAAATTATAAATAAAAAAAAAAAAAAAAAAAAAA