>SSJ172 (SSJ172Q) /CSM/SS/SSJ1-C/SSJ172Q.Seq.d/
GGAAATTCCAAAGAAGAACCGGAGTTAACGGTGAAGCTCCAGTAAGGATGAACACATCAA
TCTTAAAGTTAAAAACCAAGGCGGTGGTGAAGTATTTTTCAAAATCAAGAGATCAACACC
TTTAAAGAAATTAATGGAAGCATATTGTCAAAGACAAGGTCTTAACTATGCAAGTTGTCG
TTTCTTATTTGATGGTGTTCGTGTCAAAGAAGACGCCACACCAAATCAATTAGGTATGGA
GAATGAAGATGTTTTAGATTGTGCATTAATGCAAACTGGTGGTTCTTTCTAAATAGAATT
TGTTTGAAATAACTTAGTGGTGTATTTAAAAAATAAAAAAAAAAAAAAAGAAAGAAAGAA
AGAAGGAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAACAATAAAATAGTGCATTTTGTTA
TAAAAAACTA

eipkknrs*r*SSSKDEHINLKVKNQGGGEVFFKIKRSTPLKKLMEAYCQRQGLNYASCR
FLFDGVRVKEDATPNQLGMENEDVLDCALMQTGGSF*iefv*nnlvvylknkkkkkerkk
egrkkkkkkkkkq*nsafcykkl

Frame A:
gnskeepeltvklq*g*thqs*s*kprrw*sifqnqeintfkeingsilsktrs*lckls
fli*wcscqrrrhtksiryge*rcfrlcinanwwfflnriclk*lsgvfkk*kkkkrkke
rrkkkkkkkkkktik*cill*kt


Frame B:
eipkknrs*r*SSSKDEHINLKVKNQGGGEVFFKIKRSTPLKKLMEAYCQRQGLNYASCR
FLFDGVRVKEDATPNQLGMENEDVLDCALMQTGGSF*iefv*nnlvvylknkkkkkerkk
egrkkkkkkkkkq*nsafcykkl


Frame C:
kfqrrtgvngeapvrmntsilklktkavvkyfsksrdqhl*rn*wkhivkdkvltmqvvv
sylmvfvskktphqin*vwrmkmf*ivh*cklvvlsk*nlfeit*wci*kikkkkkkerk
keekkkkkkkknnkivhfvikn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ172 (SSJ172Q) /CSM/SS/SSJ1-C/SSJ172Q.Seq.d/                        648   0.0
VSI741 (VSI741Q) /CSM/VS/VSI7-B/VSI741Q.Seq.d/                        609   e-173
VSG273 (VSG273Q) /CSM/VS/VSG2-D/VSG273Q.Seq.d/                        609   e-173
VSF321 (VSF321Q) /CSM/VS/VSF3-A/VSF321Q.Seq.d/                        609   e-173
SSE480 (SSE480Q) /CSM/SS/SSE4-D/SSE480Q.Seq.d/                        609   e-173
SSE805 (SSE805Q) /CSM/SS/SSE8-A/SSE805Q.Seq.d/                        605   e-172
SSM219 (SSM219Q) /CSM/SS/SSM2-A/SSM219Q.Seq.d/                        601   e-171
VSA840 (VSA840Q) /CSM/VS/VSA8-B/VSA840Q.Seq.d/                        589   e-167
SSB796 (SSB796Q) /CSM/SS/SSB7-D/SSB796Q.Seq.d/                        575   e-163
SSC109 (SSC109Q) /CSM/SS/SSC1-A/SSC109Q.Seq.d/                        557   e-158

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF446008|AF446008.1 Dictyostelium discoideum small ubiquitin-like protein (SUMO) mRNA, complete cds.   494   e-147  3
AL386374|AL386374.1 Medicago truncatula EST MtBC34C06F1 : T3 end of clone MtBC34C06 of  cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic).    40   1e-04  2
AJ558946|AJ558946.1 Antirrhinum majus EST, clone 018_1_08_p11.     34   0.29   2
AJ559483|AJ559483.1 Antirrhinum majus EST, clone 018_1_10_h05.     34   0.29   2
AJ558271|AJ558271.1 Antirrhinum majus EST, clone 018_1_07_a21.     34   0.30   2
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    36   0.30   9
AC133729|AC133729.2 Rattus norvegicus clone CH230-445C18, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    42   0.49   2
AC098592|AC098592.5 Homo sapiens BAC clone RP11-403N12 from 7, complete sequence.    32   0.80   2
AC121045|AC121045.4 Rattus norvegicus clone CH230-332B10, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    42   0.80   4
AC004993|AC004993.1 Homo sapiens PAC clone RP5-1194E14 from 7p21, complete sequence.    32   0.81   2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF446008_1(AF446008|pid:none) Dictyostelium discoideum small ubi...   171   6e-42
AY251810_1(AY251810|pid:none) Bigelowiella natans small ubiquiti...   104   1e-21
FB794920_1(FB794920|pid:none) Sequence 14193 from Patent WO20080...   100   3e-20
FB794894_1(FB794894|pid:none) Sequence 14167 from Patent WO20080...   100   3e-20
EU862552_1(EU862552|pid:none) Nicotiana benthamiana isolate Z2.3...   100   3e-20
AK062434_1(AK062434|pid:none) Oryza sativa Japonica Group cDNA c...    99   5e-20
FB794918_1(FB794918|pid:none) Sequence 14191 from Patent WO20080...    98   8e-20
AL844504_57(AL844504|pid:none) Plasmodium falciparum 3D7 chromos...    98   1e-19
FB794850_1(FB794850|pid:none) Sequence 14123 from Patent WO20080...    98   1e-19
CR940347_185(CR940347|pid:none) Theileria annulata strain Ankara...    97   1e-19

 psg: 0.54  gvh: 0.32  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSJ172 is nuc

>SSJ172E.Seq
GGAAATTCCAAAGAAGAACCGGAGTTAACGGTGAAGCTCCAGTAAGGATGAACACATCAA
TCTTAAAGTTAAAAACCAAGGCGGTGGTGAAGTATTTTTCAAAATCAAGAGATCAACACC
TTTAAAGAAATTAATGGAAGCATATTGTCAAAGACAAGGTCTTAACTATGCAAGTTGTCG
TTTCTTATTTGATGGTGTTCGTGTCAAAGAAGACGCCACACCAAATCAATTAGGTATGGA
GAATGAAGATGTTTTAGATTGTGCATTAATGCAAACTGGTGGTTCTTTCTAAATAGAATT
TGTTTGAAATAACTTAGTGGTGTATTTAAAAAATAAAAAAAAAAAAAAAGAAAGAAAGAA
AGAAGGAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAACAATAAAATAGTGCATTTTGTTA
TAAAAAACTA