>SSJ169 (SSJ169Q) /CSM/SS/SSJ1-C/SSJ169Q.Seq.d/
AAAAAAACTTTTTTAAAAAAAAAAAAAAAAAACAACCAACAACAACTTATATTTCTATAA
AGATATAATCATATAAAATTTTTTAATTTTAATTAAAAATTATAAAATAAATTAATATTT
CAAATTAATTCGCCTCAATTTCAATTTCAGTTTTTTTTTTTTTAATCACTTTTTTTTAAT
TCTCCATTAAATTATTTATTTAATAATAAAAAAAAAAAAAAAAAAATAAAAAATAACGCA
CACATATTAAAAAAAA

kktflkkkkknnqqqlifl*rynhikffnfn*kl*nklifqinspqfqfqffff*SLFFN
SPLNYLFNNKKKKKKIKNNAHILKK

Frame A:
kktflkkkkknnqqqlifl*rynhikffnfn*kl*nklifqinspqfqfqffff*SLFFN
SPLNYLFNNKKKKKKIKNNAHILKK


Frame B:
kklf*kkkkkttnnnlyfykdiii*nfliliknykin*yfklirlnfnfsffffnhffli
lh*iiyliikkkkkk*kithty*kk


Frame C:
knffkkkkkkqptttyisiki*sykif*f*lkiik*inisn*fasisisvffflitff*f
siklfi***kkkkknkk*rthikk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ169 (SSJ169Q) /CSM/SS/SSJ1-C/SSJ169Q.Seq.d/                         62   4e-09
SSE787 (SSE787Q) /CSM/SS/SSE7-D/SSE787Q.Seq.d/                         62   4e-09
AFK475 (AFK475Q) /CSM/AF/AFK4-D/AFK475Q.Seq.d/                         62   4e-09
SSM582 (SSM582Q) /CSM/SS/SSM5-D/SSM582Q.Seq.d/                         38   0.061
VSF829 (VSF829Q) /CSM/VS/VSF8-B/VSF829Q.Seq.d/                         36   0.24
VSC241 (VSC241Q) /CSM/VS/VSC2-B/VSC241Q.Seq.d/                         36   0.24
VHQ380 (VHQ380Q) /CSM/VH/VHQ3-D/VHQ380Q.Seq.d/                         36   0.24
SSK488 (SSK488Q) /CSM/SS/SSK4-D/SSK488Q.Seq.d/                         36   0.24
SSJ384 (SSJ384Q) /CSM/SS/SSJ3-D/SSJ384Q.Seq.d/                         36   0.24
SSE831 (SSE831Q) /CSM/SS/SSE8-B/SSE831Q.Seq.d/                         36   0.24

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    62   2e-21  6
BX511298|BX511298.10 Zebrafish DNA sequence from clone DKEY-210E13 in linkage group 4.    38   0.002  5
CG731526|CG731526.1 1119141D11.y1 1119 - RescueMu Grid AA Zea mays genomic, genomic survey sequence.    38   0.007  2
CG731085|CG731085.1 1119133D03.y1 1119 - RescueMu Grid AA Zea mays genomic, genomic survey sequence.    38   0.007  2
BX537255|BX537255.1 Zebrafish DNA sequence *** SEQUENCING CANCELLED *** from clone  DKEY-242M19.    38   0.014  4
CG721068|CG721068.1 1119065C05.2EL_x1 1119 - RescueMu Grid AA Zea mays genomic, genomic survey sequence.    38   0.016  2
AC012642|AC012642.5 Homo sapiens chromosome 5 clone CTD-2287K1, complete sequence.    32   0.059  6
BX572633|BX572633.7 Zebrafish DNA sequence from clone CH211-276P10 in linkage group 18.    40   0.15   2
CE458227|CE458227.1 tigr-gss-dog-17000320549763 Dog Library Canis familiaris genomic, genomic survey sequence.    46   0.23   1
CG731692|CG731692.1 1119142G04.y1 1119 - RescueMu Grid AA Zea mays genomic, genomic survey sequence.    34   0.36   2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 66,781,883

 psg: 0.85  gvh: 0.19  alm: 0.70  top: 1.03  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.36  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SSJ169 is nuc

>SSJ169E.Seq
AAAAAAACTTTTTTAAAAAAAAAAAAAAAAAACAACCAACAACAACTTATATTTCTATAA
AGATATAATCATATAAAATTTTTTAATTTTAATTAAAAATTATAAAATAAATTAATATTT
CAAATTAATTCGCCTCAATTTCAATTTCAGTTTTTTTTTTTTTAATCACTTTTTTTTAAT
TCTCCATTAAATTATTTATTTAATAATAAAAAAAAAAAAAAAAAAATAAAAAATAACGCA
CACATATTAAAAAAAA