>SSJ146 (SSJ146Q) /CSM/SS/SSJ1-B/SSJ146Q.Seq.d/
GATAAAATTAGTGAAAATTATTCAAAAGAATTTGAAGCAATTAAAAGTAAATCAGACGAT
GAAGCAGTAATTATATTTACATCAGGTACAACAGGTAATCCAAAAGGATGTTTACATGCA
CATAGAGTTTTATTAGGACATTTACCAGGTGTACAATTTCCACAAAATAATTTTCCAAAT
AGAAAATCAACAAATGATTATATTTTTTATACACCAGCAGATTGGGCATGGATTGGTGGA
TTATTTGATGTATTAATTCCAAGTCTTTATTATGGTGTAACTGTATTAGCTCATCGTATG
ACTAAATTTGAACCAAAAAAGATTTGTAAGCTATTGATTGATAATAAAGTAGATACAGCA
TTTTTACCACCATCAGCGTTGAAAATTATGAAACAACAAGAGGAGCAATTAAAATTAACA
CCTGTTAATATGACATCGATTGGAAGTGGCGGTGAAAGTTTAGGTGAAAAACTATTACAA
TGGGGTAAAGAACAATTCAATGTTGAAATTGCAGAATTCTATXXXXXXXXXXGGTTCCGA
TGGGTACGGTTTTCCCCATTGGTCCCGGTTGGGGGCTATTGCTTGGAAACCCCCGGTCCC
GGTGCCTTTTTTACCTTTTGGGGATAATGGTTAAGGCTGCCTAAAAAGGACATGGATTGG
TGATTGGTTCGTAACCGGGGATTGGGGTTGGAAAAGATCGTGGATGGTTATATTTGGGTA
TGTTGGTCGGTGATGATGATCTAATCCAATTCCAGTGGTTATCGTATTGGCCCTTCGGGA
ATTGAAAAATTGTTTATTAAACCATCCTTCAGTTTCAAATGTTGGTGTGGTAGGTGTCCC
TGATGAAATTCGTGGTGAAATAGTAAAGGCTTTCATTGTTTTAAATCCTTCCTATTCTAA
ATCTGGTCAATTAAAAAAGGATATTCAAAATTATGTAAAAACAATATTATCTGCTCATGA
ATATCCAAGAGAAATTGAATTCATTAATGAATTCCCAACTACTACAACTGGTAAAATAAT
TCGTAAAGATTTAAGATCATTACATCCTCCCCCATCATAATAATTTAAAAAATTAATTAT
TAAATATATTTAAAAAAAAAAAAAAAAAAAAAAAAAAATGGATGAATAATAAAATTTTTG
G

DKISENYSKEFEAIKSKSDDEAVIIFTSGTTGNPKGCLHAHRVLLGHLPGVQFPQNNFPN
RKSTNDYIFYTPADWAWIGGLFDVLIPSLYYGVTVLAHRMTKFEPKKICKLLIDNKVDTA
FLPPSALKIMKQQEEQLKLTPVNMTSIGSGGESLGEKLLQWGKEQFNVEIAEFY---

---VPMGTVFPIGPGWGLLLGNPRSRCLFYLLGIMVKAA*kghglvigs*pgigvgkdrg
wlylgmlvgdddliqfqwlsywpfgn*kivy*tilqfqmlvw*vslmkfvvk**rlslf*
ilpilnlvn*krifkim*kqyyllmniqeklnslmnsqllqlvk*fvki*dhyilphhnn
lkn*llnifkkkkkkkkkwmnnkif

Frame A:
DKISENYSKEFEAIKSKSDDEAVIIFTSGTTGNPKGCLHAHRVLLGHLPGVQFPQNNFPN
RKSTNDYIFYTPADWAWIGGLFDVLIPSLYYGVTVLAHRMTKFEPKKICKLLIDNKVDTA
FLPPSALKIMKQQEEQLKLTPVNMTSIGSGGESLGEKLLQWGKEQFNVEIAEFY---

---gsdgygfphwsrlgaiawkppvpvpflpfgdng*gclkrtwigdwfvtgdwgwkrsw
mvifgyvgr***snpipvvivlalrelkncllnhpsvsnvgvvgvpdeirgeivkafivl
npsysksgqlkkdiqnyvktilsaheypreiefinefpttttgkiirkdlrslhppps**
fkkliikyi*kkkkkkkkmde**nfw

Frame B:
iklvkiiqknlkqlkvnqtmkq*lylhqvqqviqkdvymhiefy*diyqvynfhkiifqi
enqqmiiffihqqighglvdylmy*fqvfimv*ly*liv*lnlnqkrfvsy*liik*iqh
fyhhqr*kl*nnkrsn*n*hlli*hrlevavkv*vknyyngvknnsmlklqns---

---VPMGTVFPIGPGWGLLLGNPRSRCLFYLLGIMVKAA*kghglvigs*pgigvgkdrg
wlylgmlvgdddliqfqwlsywpfgn*kivy*tilqfqmlvw*vslmkfvvk**rlslf*
ilpilnlvn*krifkim*kqyyllmniqeklnslmnsqllqlvk*fvki*dhyilphhnn
lkn*llnifkkkkkkkkkwmnnkif

Frame C:
*n**klfkri*sn*k*irr*ssnyiyirynr*skrmftct*sfirtftrctistk*fsk*
kink*lyflytsrlgmdwwii*cinsksllwcncisssyd*i*tkkdl*aid***srysi
fttisvenyettrgaikintc*ydidwkwr*kfr*ktitmg*rtiqc*ncril---

---frwvrfsplvpvggycletpgpgafftfwg*wlrlpkkdmdw*lvrnrglglekivd
gyiwvcwsvmmi*snssgyrigpsgieklfikpsfsfkcwcgrcp**nsw*nskgfhcfk
sflf*iwsikkgysklcknniics*iskrn*ih**ipnyynw*nns*rfkiitsspiiii
*kiny*iylkkkkkkkkng*iikfl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ146 (SSJ146Q) /CSM/SS/SSJ1-B/SSJ146Q.Seq.d/                       2103   0.0
SSI522 (SSI522Q) /CSM/SS/SSI5-A/SSI522Q.Seq.d/                        523   e-147
SSM481 (SSM481Q) /CSM/SS/SSM4-D/SSM481Q.Seq.d/                         40   0.073
SSJ185 (SSJ185Q) /CSM/SS/SSJ1-D/SSJ185Q.Seq.d/                         40   0.073
VSK264 (VSK264Q) /CSM/VS/VSK2-C/VSK264Q.Seq.d/                         38   0.29
VSF542 (VSF542Q) /CSM/VS/VSF5-B/VSF542Q.Seq.d/                         38   0.29
VSB137 (VSB137Q) /CSM/VS/VSB1-B/VSB137Q.Seq.d/                         38   0.29
VHB582 (VHB582Q) /CSM/VH/VHB5-D/VHB582Q.Seq.d/                         38   0.29
VHA607 (VHA607Q) /CSM/VH/VHA6-A/VHA607Q.Seq.d/                         38   0.29
VFL193 (VFL193Q) /CSM/VF/VFL1-D/VFL193Q.Seq.d/                         38   0.29

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116979|AC116979.2 Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence.  1035  0.0  7
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.    76  2e-49  13
AX145429|AX145429.1 Sequence 4151 from Patent WO0134809.          48  2e-04  2
AF270111|AF270111.1 Staphylococcus epidermidis strain SR1 clone step.1049h08 genomic sequence.    48  2e-04  2
AC103551|AC103551.5 Oryza sativa chromosome 3 clone OSJNBb0058G04, *** SEQUENCING IN PROGRESS ***, 10 ordered pieces.    48  0.002  3
AP000996|AP000996.2 Thermoplasma volcanium genomic DNA, complete sequence, section 6/6.    54  0.004  1
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2.    42  0.004  12
AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence.    42  0.008  8
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    32  0.033  11
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          40  0.040  11

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116924_21(AC116924|pid:none) Dictyostelium discoideum chromoso...   360   4e-98
AC115592_4(AC115592|pid:none) Dictyostelium discoideum chromosom...   176   4e-67
CP000283_3963(CP000283|pid:none) Rhodopseudomonas palustris BisB...   159   2e-37
CP000570_1496(CP000570|pid:none) Burkholderia pseudomallei 668 c...   154   4e-36
CP001408_1528(CP001408|pid:none) Burkholderia pseudomallei MSHR3...   153   1e-35
CP000526_1294(CP000526|pid:none) Burkholderia mallei SAVP1 chrom...   153   1e-35
BX571965_1397(BX571965|pid:none) Burkholderia pseudomallei strai...   153   1e-35
CP000124_1688(CP000124|pid:none) Burkholderia pseudomallei 1710b...   153   1e-35
CP000958_1292(CP000958|pid:none) Burkholderia cenocepacia MC0-3 ...   151   5e-35
BA000012_4689(BA000012|pid:none) Mesorhizobium loti MAFF303099 D...   149   1e-34

 psg: 0.75  gvh: 0.47  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: peroxisomal

>> prediction for SSJ146 is cyt

>SSJ146F.Seq
GATAAAATTAGTGAAAATTATTCAAAAGAATTTGAAGCAATTAAAAGTAAATCAGACGAT
GAAGCAGTAATTATATTTACATCAGGTACAACAGGTAATCCAAAAGGATGTTTACATGCA
CATAGAGTTTTATTAGGACATTTACCAGGTGTACAATTTCCACAAAATAATTTTCCAAAT
AGAAAATCAACAAATGATTATATTTTTTATACACCAGCAGATTGGGCATGGATTGGTGGA
TTATTTGATGTATTAATTCCAAGTCTTTATTATGGTGTAACTGTATTAGCTCATCGTATG
ACTAAATTTGAACCAAAAAAGATTTGTAAGCTATTGATTGATAATAAAGTAGATACAGCA
TTTTTACCACCATCAGCGTTGAAAATTATGAAACAACAAGAGGAGCAATTAAAATTAACA
CCTGTTAATATGACATCGATTGGAAGTGGCGGTGAAAGTTTAGGTGAAAAACTATTACAA
TGGGGTAAAGAACAATTCAATGTTGAAATTGCAGAATTCTAT----------

>SSJ146Z.Seq
----------GGTTCCGATGGGTACGGTTTTCCCCATTGGTCCCGGTTGGGGGCTATTGC
TTGGAAACCCCCGGTCCCGGTGCCTTTTTTACCTTTTGGGGATAATGGTTAAGGCTGCCT
AAAAAGGACATGGATTGGTGATTGGTTCGTAACCGGGGATTGGGGTTGGAAAAGATCGTG
GATGGTTATATTTGGGTATGTTGGTCGGTGATGATGATCTAATCCAATTCCAGTGGTTAT
CGTATTGGCCCTTCGGGAATTGAAAAATTGTTTATTAAACCATCCTTCAGTTTCAAATGT
TGGTGTGGTAGGTGTCCCTGATGAAATTCGTGGTGAAATAGTAAAGGCTTTCATTGTTTT
AAATCCTTCCTATTCTAAATCTGGTCAATTAAAAAAGGATATTCAAAATTATGTAAAAAC
AATATTATCTGCTCATGAATATCCAAGAGAAATTGAATTCATTAATGAATTCCCAACTAC
TACAACTGGTAAAATAATTCGTAAAGATTTAAGATCATTACATCCTCCCCCATCATAATA
ATTTAAAAAATTAATTATTAAATATATTTAAAAAAAAAAAAAAAAAAAAAAAAAAATGGA
TGAATAATAAAATTTTTGG

>SSJ146P.Seq
GATAAAATTAGTGAAAATTATTCAAAAGAATTTGAAGCAATTAAAAGTAAATCAGACGAT
GAAGCAGTAATTATATTTACATCAGGTACAACAGGTAATCCAAAAGGATGTTTACATGCA
CATAGAGTTTTATTAGGACATTTACCAGGTGTACAATTTCCACAAAATAATTTTCCAAAT
AGAAAATCAACAAATGATTATATTTTTTATACACCAGCAGATTGGGCATGGATTGGTGGA
TTATTTGATGTATTAATTCCAAGTCTTTATTATGGTGTAACTGTATTAGCTCATCGTATG
ACTAAATTTGAACCAAAAAAGATTTGTAAGCTATTGATTGATAATAAAGTAGATACAGCA
TTTTTACCACCATCAGCGTTGAAAATTATGAAACAACAAGAGGAGCAATTAAAATTAACA
CCTGTTAATATGACATCGATTGGAAGTGGCGGTGAAAGTTTAGGTGAAAAACTATTACAA
TGGGGTAAAGAACAATTCAATGTTGAAATTGCAGAATTCTAT----------GGTTCCGA
TGGGTACGGTTTTCCCCATTGGTCCCGGTTGGGGGCTATTGCTTGGAAACCCCCGGTCCC
GGTGCCTTTTTTACCTTTTGGGGATAATGGTTAAGGCTGCCTAAAAAGGACATGGATTGG
TGATTGGTTCGTAACCGGGGATTGGGGTTGGAAAAGATCGTGGATGGTTATATTTGGGTA
TGTTGGTCGGTGATGATGATCTAATCCAATTCCAGTGGTTATCGTATTGGCCCTTCGGGA
ATTGAAAAATTGTTTATTAAACCATCCTTCAGTTTCAAATGTTGGTGTGGTAGGTGTCCC
TGATGAAATTCGTGGTGAAATAGTAAAGGCTTTCATTGTTTTAAATCCTTCCTATTCTAA
ATCTGGTCAATTAAAAAAGGATATTCAAAATTATGTAAAAACAATATTATCTGCTCATGA
ATATCCAAGAGAAATTGAATTCATTAATGAATTCCCAACTACTACAACTGGTAAAATAAT
TCGTAAAGATTTAAGATCATTACATCCTCCCCCATCATAATAATTTAAAAAATTAATTAT
TAAATATATTTAAAAAAAAAAAAAAAAAAAAAAAAAAATGGATGAATAATAAAATTTTTG
G