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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSJ106
Library SS
(Link to library)
Clone ID SSJ106
Atlas ID
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14685-1
Original site URL
Representative seq. ID SSJ106P
(Link to Original site)
Representative DNA sequence 
>SSJ106 (SSJ106Q) /CSM/SS/SSJ1-A/SSJ106Q.Seq.d/
ACAAAAGATTAAAAAATAAAATAAAATAAATAAATAAAAAACTAATTATAAAAGTAATAT
AATAATTATTTATAATAAATAAATAAATAAATAAAATAAAAATAAAAAATATGGTTCTTA
GTAAACAAATTGTATTAAAAAATCACATCGAAAGTGGTACACCAACTTTGGAGGATTTTG
AAGAGAAAACTTTTGAATTTTCAATTGAAGAATTAAAAAATGAAGAAGTAGTAGTAAAAT
TAGAGATAGTTTCACCAGACCCATATATGAGAGGTCGTATGACAACACGTAAATCATATA
TCCCACCATTTGAAATTGGTAAACCAATTGTTGGATATGCTATTGGTAAAGTTACAAAAG
CAGGCTCAGCATCAAAGTATTCAGTAGGTGATTACATTATGGGTCATTTACCATGGCAAT
CTGAATTCATCTACAATTCAAACAGTCCATATGCAAATAAAATCGATACAACATTAGCGC
CATTGGAATCATTCCTCTCAGTTTTGGGTATGGTCGGATTAACAGCTTATCACGGTCTCA
AAGAGATCGCAGAACCXXXXXXXXXXTGGGAACCCAATTGGTGGGATATCCTATTGGTAA
GGTTCCAAAAGGCAGGCTCAGCATCCAAGGTATTCCAGGTGGGTGGATTCCATTATGGGG
TCTTTTCCCCATGGCCAATCTGGATTTCATCTACAACTTCAAACAGTCCCATATGCAAAT
AAAACCGATACCACCATTAGCGCCCATTGGAATCATTCCCTCTCCAGTTTTGGGTATGGT
CGGATTAACAGCTTATCACGGTCTCAAAGAGATCGCAGAACCAAAACAAGGTGAACCCAT
GGTAATCAGCGCTGCAGCCGGTGCAGTAGGTCAATTGGTCGGTCAAATTGGTAAAATCAA
AGGTTGCAGAGTTGTAGGTATCGTAGGTTCCGAAGAGAAGATAAAATACATCGTCGATGA
ATTAGGTTTTGATGTCGGTGTAAATTACAATTCACCAACTTATAAAGACGATATAGCAAA
AGCAATTCCAAATGGTGTTGATATATATTGGGAGAATGTTGGTGGTGTTGTATCTGATGC
AATTTGGCCACACTTGAATAAGTTTGCCCGTATTCCACTATGCGGTGTAATCTCACAATA
CAACTCTACTGAAAAGGATGTTGGCCCACGTATTGAAGGTTATCTCTTGAAAACTTCCTC
AAAATTACAAGGTTTCATCGTTGCAAACTATGCAAGCAAACATGCTGAAGCATTAAAAGA
ATTGGCTCAATGGTATAAATCTGGTCAACTCAAAGATAGACACACCATTAATAATGGTTT
CGATCAATTGGTGCCATCTTTTCTTGCATTATTCAAAGGTACAAATACTGGTAAAATGAT
GGTAAAATTGTAAAATAAATAAAAATAAAATCAATTTCTTAAAAAAAAAAAA
sequence update 1998.12.21
Translated Amino Acid sequence 
krlknkik*inkkliikvi**lfiink*INKIKIKNMVLSKQIVLKNHIESGTPTLEDFE
EKTFEFSIEELKNEEVVVKLEIVSPDPYMRGRMTTRKSYIPPFEIGKPIVGYAIGKVTKA
GSASKYSVGDYIMGHLPWQSEFIYNSNSPYANKIDTTLAPLESFLSVLGMVGLTAYHGLK
EIAE---

---GTQLVGYPIGKVPKGRLSIQGIPGGWIPLWGLFPMANLDFIYNFKQSHMQIKPIPPL
APIGIIPSPVLGMVGLTAYHGLKEIAEPKQGEPMVISAAAGAVGQLVGQIGKIKGCRVVG
IVGSEEKIKYIVDELGFDVGVNYNSPTYKDDIAKAIPNGVDIYWENVGGVVSDAIWPHLN
KFARIPLCGVISQYNSTEKDVGPRIEGYLLKTSSKLQGFIVANYASKHAEALKELAQWYK
SGQLKDRHTINNGFDQLVPSFLALFKGTNTGKMMVKL*nk*k*nqflkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
tkd*kik*nk*ikn*l*k*ynnyl**ink*ik*k*kiwflvnkly*kitskvvhqlwril
krkllnfqlkn*kmkk***n*r*fhqthi*evv*qhvnhishhlklvnqlldmllvklqk
qaqhqsiq*vitlwviyhgnlnsstiqtvhmqiksiqh*rhwnhssqfwvwsd*qlitvs
krsqn---

---wepnwwdillvrfqkagsaskvfqvggfhygvfspwpiwissttsnspick*nryhh
*rplesfplqfwvwsd*qlitvskrsqnqnkvnpw*salqpvq*vnwsvklvkskvael*
vs*vpkrr*ntssmn*vlmsv*itihqlikti*qkqfqmvliyigrmlvvlylmqfght*
islpvfhyav*shnttllkrmlahvlkvis*klpqnykvsslqtmqanmlkh*knwlngi
nlvnskidtplimvsinwchlflhyskvqilvk*w*nckinknkinflkkk

Frame B:
qkikk*nkink*ktnyksniiiiynk*ink*nknkkygs**tncikkshrkwytnfggf*
renf*ifn*rikk*rssskirdsftrpiyersydnt*iiypti*nw*tncwicyw*syks
rlsikvfsr*lhygsftmai*ihlqfkqsick*nrynisaigiiplsfgygrinslsrsq
rdrrt---

---gnpiggisyw*gskrqaqhprysrwvdsimgsfphgqsgfhlqlqtvpyanktdtti
sahwnhslssfgygrinslsrsqrdrrtktr*thgnqrcsrcsrsigrsnw*nqrlqscr
yrrfrredkihrr*irf*crcklqftnl*rrysksnskwc*yilgecwwcci*cnlatle
*vcpystmrcnltiqly*kgcwpty*rlslenflkitrfhrcklckqtc*sikrigsmv*
iwstqr*thh**wfrsigaifsciiqrykyw*ndgkivk*ikiksis*kkk

Frame C:
krlknkik*inkkliikvi**lfiink*INKIKIKNMVLSKQIVLKNHIESGTPTLEDFE
EKTFEFSIEELKNEEVVVKLEIVSPDPYMRGRMTTRKSYIPPFEIGKPIVGYAIGKVTKA
GSASKYSVGDYIMGHLPWQSEFIYNSNSPYANKIDTTLAPLESFLSVLGMVGLTAYHGLK
EIAE---

---GTQLVGYPIGKVPKGRLSIQGIPGGWIPLWGLFPMANLDFIYNFKQSHMQIKPIPPL
APIGIIPSPVLGMVGLTAYHGLKEIAEPKQGEPMVISAAAGAVGQLVGQIGKIKGCRVVG
IVGSEEKIKYIVDELGFDVGVNYNSPTYKDDIAKAIPNGVDIYWENVGGVVSDAIWPHLN
KFARIPLCGVISQYNSTEKDVGPRIEGYLLKTSSKLQGFIVANYASKHAEALKELAQWYK
SGQLKDRHTINNGFDQLVPSFLALFKGTNTGKMMVKL*nk*k*nqflkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ106 (SSJ106Q) /CSM/SS/SSJ1-A/SSJ106Q.Seq.d/                       2424   0.0
VHM751 (VHM751Q) /CSM/VH/VHM7-C/VHM751Q.Seq.d/                       1178   0.0
VSF195 (VSF195Q) /CSM/VS/VSF1-D/VSF195Q.Seq.d/                       1084   0.0
VFM264 (VFM264Q) /CSM/VF/VFM2-C/VFM264Q.Seq.d/                       1078   0.0
VSC130 (VSC130Q) /CSM/VS/VSC1-B/VSC130Q.Seq.d/                        969   0.0
VSI692 (VSI692Q) /CSM/VS/VSI6-D/VSI692Q.Seq.d/                        626   e-178
SLD585 (SLD585Q) /CSM/SL/SLD5-D/SLD585Q.Seq.d/                        389   e-107
CHO803 (CHO803Q) /CSM/CH/CHO8-A/CHO803Q.Seq.d/                         76   2e-12
CHK326 (CHK326Q) /CSM/CH/CHK3-B/CHK326Q.Seq.d/                         76   2e-12
CHK301 (CHK301Q) /CSM/CH/CHK3-A/CHK301Q.Seq.d/                         76   2e-12
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AX622398|AX622398.1 Sequence 5361 from Patent WO02094868.         40  0.004  2
AF282920|AF282920.1 Staphylococcus aureus quinone oxidoreductase and glycine betaine transporter genes, complete cds.    40  0.013  3
AC078831|AC078831.10 Staphylococcus aureus clone sabac-124, complete sequence.    40  0.10  2
AX144265|AX144265.1 Sequence 2987 from Patent WO0134809.          42  0.22  2
AP004829|AP004829.1 Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2, section 8/10.    40  0.27  8
AC115606|AC115606.2 Dictyostelium discoideum chromosome 2 map 159760-209066 strain AX4, complete sequence.    36  0.29  4
BQ134858|BQ134858.1 INIT1_4_H12.b1_A006 G5 trophont cDNA (INIT1) Ichthyophthirius multifiliis cDNA, mRNA sequence.    48  0.31  1
AQ004295|AQ004295.1 CIT-HSP-2291D7.TF CIT-HSP Homo sapiens genomic clone 2291D7, genomic survey sequence.    38  0.43  2
BQ424943|BQ424943.1 AGENCOURT_7895869 NIH_MGC_71 Homo sapiens cDNA clone IMAGE:6155985 5', mRNA sequence.    38  0.77  2
AP003364|AP003364.2 Staphylococcus aureus subsp. aureus Mu50 genomic DNA, complete sequence, section 7/9.    40  0.78  10
dna update 2003. 8. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ498909_1(DQ498909|pid:none) Staphylococcus xylosus NADP-depend...   211   7e-53
BA000033_2113(BA000033|pid:none) Staphylococcus aureus subsp. au...   209   3e-52
AM295250_1683(AM295250|pid:none) Staphylococcus carnosus subsp. ...   202   3e-50
CP001022_791(CP001022|pid:none) Exiguobacterium sibiricum 255-15...   201   4e-50
CU459140_14(CU459140|pid:none) Acinetobacter baumannii str. AYE ...   190   9e-47
BA000028_2947(BA000028|pid:none) Oceanobacillus iheyensis HTE831...   189   2e-46
CP000826_2983(CP000826|pid:none) Serratia proteamaculans 568, co...   181   6e-44
CP000094_1806(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ...   180   1e-43
CP001038_168(CP001038|pid:none) Nostoc punctiforme PCC 73102 pla...   177   8e-43
CU928163_1673(CU928163|pid:none) Escherichia coli UMN026 chromos...   177   8e-43
protein update 2009. 6.13
PSORT 

 psg: 0.70  gvh: 0.25  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for SSJ106 is cyt
5' end seq. ID SSJ106F
5' end seq. 
>SSJ106F.Seq
ACAAAAGATTAAAAAATAAAATAAAATAAATAAATAAAAAACTAATTATAAAAGTAATAT
AATAATTATTTATAATAAATAAATAAATAAATAAAATAAAAATAAAAAATATGGTTCTTA
GTAAACAAATTGTATTAAAAAATCACATCGAAAGTGGTACACCAACTTTGGAGGATTTTG
AAGAGAAAACTTTTGAATTTTCAATTGAAGAATTAAAAAATGAAGAAGTAGTAGTAAAAT
TAGAGATAGTTTCACCAGACCCATATATGAGAGGTCGTATGACAACACGTAAATCATATA
TCCCACCATTTGAAATTGGTAAACCAATTGTTGGATATGCTATTGGTAAAGTTACAAAAG
CAGGCTCAGCATCAAAGTATTCAGTAGGTGATTACATTATGGGTCATTTACCATGGCAAT
CTGAATTCATCTACAATTCAAACAGTCCATATGCAAATAAAATCGATACAACATTAGCGC
CATTGGAATCATTCCTCTCAGTTTTGGGTATGGTCGGATTAACAGCTTATCACGGTCTCA
AAGAGATCGCAGAACC----------
Length of 5' end seq. 556
3' end seq. ID SSJ106Z
3' end seq. 
>SSJ106Z.Seq
----------TGGGAACCCAATTGGTGGGATATCCTATTGGTAAGGTTCCAAAAGGCAGG
CTCAGCATCCAAGGTATTCCAGGTGGGTGGATTCCATTATGGGGTCTTTTCCCCATGGCC
AATCTGGATTTCATCTACAACTTCAAACAGTCCCATATGCAAATAAAACCGATACCACCA
TTAGCGCCCATTGGAATCATTCCCTCTCCAGTTTTGGGTATGGTCGGATTAACAGCTTAT
CACGGTCTCAAAGAGATCGCAGAACCAAAACAAGGTGAACCCATGGTAATCAGCGCTGCA
GCCGGTGCAGTAGGTCAATTGGTCGGTCAAATTGGTAAAATCAAAGGTTGCAGAGTTGTA
GGTATCGTAGGTTCCGAAGAGAAGATAAAATACATCGTCGATGAATTAGGTTTTGATGTC
GGTGTAAATTACAATTCACCAACTTATAAAGACGATATAGCAAAAGCAATTCCAAATGGT
GTTGATATATATTGGGAGAATGTTGGTGGTGTTGTATCTGATGCAATTTGGCCACACTTG
AATAAGTTTGCCCGTATTCCACTATGCGGTGTAATCTCACAATACAACTCTACTGAAAAG
GATGTTGGCCCACGTATTGAAGGTTATCTCTTGAAAACTTCCTCAAAATTACAAGGTTTC
ATCGTTGCAAACTATGCAAGCAAACATGCTGAAGCATTAAAAGAATTGGCTCAATGGTAT
AAATCTGGTCAACTCAAAGATAGACACACCATTAATAATGGTTTCGATCAATTGGTGCCA
TCTTTTCTTGCATTATTCAAAGGTACAAATACTGGTAAAATGATGGTAAAATTGTAAAAT
AAATAAAAATAAAATCAATTTCTTAAAAAAAAAAAA
Length of 3' end seq. 866
Connected seq. ID SSJ106P
Connected seq. 
>SSJ106P.Seq
ACAAAAGATTAAAAAATAAAATAAAATAAATAAATAAAAAACTAATTATAAAAGTAATAT
AATAATTATTTATAATAAATAAATAAATAAATAAAATAAAAATAAAAAATATGGTTCTTA
GTAAACAAATTGTATTAAAAAATCACATCGAAAGTGGTACACCAACTTTGGAGGATTTTG
AAGAGAAAACTTTTGAATTTTCAATTGAAGAATTAAAAAATGAAGAAGTAGTAGTAAAAT
TAGAGATAGTTTCACCAGACCCATATATGAGAGGTCGTATGACAACACGTAAATCATATA
TCCCACCATTTGAAATTGGTAAACCAATTGTTGGATATGCTATTGGTAAAGTTACAAAAG
CAGGCTCAGCATCAAAGTATTCAGTAGGTGATTACATTATGGGTCATTTACCATGGCAAT
CTGAATTCATCTACAATTCAAACAGTCCATATGCAAATAAAATCGATACAACATTAGCGC
CATTGGAATCATTCCTCTCAGTTTTGGGTATGGTCGGATTAACAGCTTATCACGGTCTCA
AAGAGATCGCAGAACC----------TGGGAACCCAATTGGTGGGATATCCTATTGGTAA
GGTTCCAAAAGGCAGGCTCAGCATCCAAGGTATTCCAGGTGGGTGGATTCCATTATGGGG
TCTTTTCCCCATGGCCAATCTGGATTTCATCTACAACTTCAAACAGTCCCATATGCAAAT
AAAACCGATACCACCATTAGCGCCCATTGGAATCATTCCCTCTCCAGTTTTGGGTATGGT
CGGATTAACAGCTTATCACGGTCTCAAAGAGATCGCAGAACCAAAACAAGGTGAACCCAT
GGTAATCAGCGCTGCAGCCGGTGCAGTAGGTCAATTGGTCGGTCAAATTGGTAAAATCAA
AGGTTGCAGAGTTGTAGGTATCGTAGGTTCCGAAGAGAAGATAAAATACATCGTCGATGA
ATTAGGTTTTGATGTCGGTGTAAATTACAATTCACCAACTTATAAAGACGATATAGCAAA
AGCAATTCCAAATGGTGTTGATATATATTGGGAGAATGTTGGTGGTGTTGTATCTGATGC
AATTTGGCCACACTTGAATAAGTTTGCCCGTATTCCACTATGCGGTGTAATCTCACAATA
CAACTCTACTGAAAAGGATGTTGGCCCACGTATTGAAGGTTATCTCTTGAAAACTTCCTC
AAAATTACAAGGTTTCATCGTTGCAAACTATGCAAGCAAACATGCTGAAGCATTAAAAGA
ATTGGCTCAATGGTATAAATCTGGTCAACTCAAAGATAGACACACCATTAATAATGGTTT
CGATCAATTGGTGCCATCTTTTCTTGCATTATTCAAAGGTACAAATACTGGTAAAATGAT
GGTAAAATTGTAAAATAAATAAAAATAAAATCAATTTCTTAAAAAAAAAAAA
Length of connected seq. 1422
Full length Seq ID -
Full length Seq. -
Length of full length seq. -