AFL557
Library AF
(Link to library)
Clone ID AFL557
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFL557P
(Link to Original site)
Representative DNA sequence
>AFL557 (AFL557Q) /CSM/AF/AFL5-C/AFL557Q.Seq.d/
ATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACATTTCATAAAAAAAAA
AAAAAAAAAAAAAANTTAAAAANNCNNCTTTTTNGAAAAAAAAAAXXXXXXXXXXANTTT
TTNNAAANNCCNNNNNCGGTNAANNNTANNNNNNTNNAANTTNAAGGTANNNNNNNCNTT
NANNATTNAAAANCAAAAATTCNANNATAAANAAGGTNTTCCNCCANANNAANAANGTNT
NATTTTNNNTGGTAANCAATTANAANATGNTNGNACTNTNTNTGATTACAATATCCAAAA
ANAATCANCTNTCCACTTGGTCNTCAGATTAAGAGGTGGTATGCAAATNTTTGTCAAAAC
ATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGATAATATTGAAAATGTTAN
ANCAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTTCGCTGG
TAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCT
CCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAA
GACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATNCA
AGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGA
GGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCT
CAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACT
CGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGG
TATCCCACCAGATCA
sequence update 2009. 4. 3
Translated Amino Acid sequence
IQILNSYFIFLYIVTFHKKKKKKKXLKXXLFXKKK---

---XFXKXXXRXXXXXXXXKVXXXXXIXXQKFXXKXGXPPXXXXXIXXGXQLXXXXTXXD
YNIQKXSXXHLVXRLRGGMQXFVKTLTGKTITLEVEGSDNIENVXXKIQDKEGIPPDQQR
LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENV
KAKXQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG
KTITLEVEGSDNIENVKTKIQDKEGIPPD


Translated Amino Acid sequence (All Frames)
Frame A:
IQILNSYFIFLYIVTFHKKKKKKKXLKXXLFXKKK---

---XFXKXXXRXXXXXXXXKVXXXXXIXXQKFXXKXGXPPXXXXXIXXGXQLXXXXTXXD
YNIQKXSXXHLVXRLRGGMQXFVKTLTGKTITLEVEGSDNIENVXXKIQDKEGIPPDQQR
LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENV
KAKXQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG
KTITLEVEGSDNIENVKTKIQDKEGIPPD

Frame B:
yky*ihilffyil*hfikkkkkkkx*kxxfxekk---

---xfxxxxxgxxxxxxxxrxxxxxxxkxknsxixkvfxxxxxvxfxxvxnxxmxxlxxi
tiskxnxlstwssd*evvckxlskh*lvrpsllklraqiilkmlxqrfktkkvshqtnkd
*fslvnn*kmvvlslittfkrnplsi*ssd*evvckflskpslvrllhsklkvlitlrml
kpkxktkkvfhqinnvsfspvnnwrmvvlslittfkrnplsi*fsd*evvckfl*klslv
kplhsklkvvttlrm*kqkfktkkvshqi

Frame C:
tnikfifyffiycnis*kkkkkkkxkxxxfxkkk---

---fxxxpxxvxxxxxxxxgxxxxxxxkxkixx*xrxsxxxxxxxfxw*xixxxxxxx*l
qypkxixxplgxqikrwyanxcqninw*dhhs*s*glr*y*kcxxkdsrqrryptrptki
nfrw*tirrwsysl*lqhskgihspfspqikrwyanfcqnphw*dyytrs*rf**h*ec*
sqnxrqrrystrsttshfrr*tiggwsysl*lqhskgihspfssqikrwyanfcknshw*
nhytrs*r**qh*ecknknsrqrryptrs

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFF769 (SFF769Q) /CSM/SF/SFF7-C/SFF769Q.Seq.d/ 1219 0.0
SFD191 (SFD191Q) /CSM/SF/SFD1-D/SFD191Q.Seq.d/ 1219 0.0
CHE361 (CHE361Q) /CSM/CH/CHE3-C/CHE361Q.Seq.d/ 1219 0.0
CFJ655 (CFJ655Q) /CSM/CF/CFJ6-C/CFJ655Q.Seq.d/ 1219 0.0
CFG260 (CFG260Q) /CSM/CF/CFG2-C/CFG260Q.Seq.d/ 1219 0.0
CFF743 (CFF743Q) /CSM/CF/CFF7-B/CFF743Q.Seq.d/ 1219 0.0
CFF552 (CFF552Q) /CSM/CF/CFF5-C/CFF552Q.Seq.d/ 1219 0.0
CFA741 (CFA741Q) /CSM/CF/CFA7-B/CFA741Q.Seq.d/ 1219 0.0
AFM436 (AFM436Q) /CSM/AF/AFM4-B/AFM436Q.Seq.d/ 1219 0.0
AFL557 (AFL557Q) /CSM/AF/AFL5-C/AFL557Q.Seq.d/ 1219 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ346614) Dictyostelium discoideum cDNA clone:dda24a15, 3' ... 1241 0.0 1
(BJ376924) Dictyostelium discoideum cDNA clone:ddc30j15, 3' ... 1227 0.0 1
(BJ372658) Dictyostelium discoideum cDNA clone:ddc13g16, 3' ... 1227 0.0 1
(BJ372412) Dictyostelium discoideum cDNA clone:ddc12d16, 3' ... 1225 0.0 1
(BJ341464) Dictyostelium discoideum cDNA clone:dda6c22, 3' e... 1223 0.0 1
(M19491) Slime mold (D.discoideum) ubiquitin p229C/pLK229 ge... 1219 0.0 1
(BJ399862) Dictyostelium discoideum cDNA clone:dds7e23, 3' e... 1219 0.0 1
(BJ398486) Dictyostelium discoideum cDNA clone:dds12j17, 3' ... 1219 0.0 1
(BJ375962) Dictyostelium discoideum cDNA clone:ddc20m14, 3' ... 1219 0.0 1
(BJ373224) Dictyostelium discoideum cDNA clone:ddc2b12, 3' e... 1219 0.0 1
dna update 2009. 4. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict... 408 e-112
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge... 408 e-112
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty... 408 e-112
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ... 406 e-112
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu... 393 e-108
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq... 392 e-108
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu... 392 e-108
S32020(S32020) polyubiquitin 6 - Geodia cydonium &X70917_1(X709... 392 e-108
T16144(T16144) ubiquitin - Caenorhabditis elegans &U23172_1(U23... 392 e-108
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar... 390 e-107
protein update 2009. 4. 3
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFL557 is

5' end seq. ID AFL557F
5' end seq.
>AFL557F.Seq
ATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACATTTCATAAAAAAAAA
AAAAAAAAAAAAAANTTAAAAANNCNNCTTTTTNGAAAAAAAAAAXXXXXXXXXX
Length of 5' end seq. 115
3' end seq. ID AFL557Z
3' end seq.
>AFL557Z.Seq
XXXXXXXXXXANTTTTTNNAAANNCCNNNNNCGGTNAANNNTANNNNNNTNNAANTTNAA
GGTANNNNNNNCNTTNANNATTNAAAANCAAAAATTCNANNATAAANAAGGTNTTCCNCC
ANANNAANAANGTNTNATTTTNNNTGGTAANCAATTANAANATGNTNGNACTNTNTNTGA
TTACAATATCCAAAAANAATCANCTNTCCACTTGGTCNTCAGATTAAGAGGTGGTATGCA
AATNTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGATAA
TATTGAAAATGTTANANCAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAG
ATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCA
AAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAA
AACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGT
TAAAGCCAAAATNCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGC
CGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCAC
TCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGG
TAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAAT
TCAAGACAAAGAAGGTATCCCACCAGATCA
Length of 3' end seq. 810
Connected seq. ID AFL557P
Connected seq.
>AFL557P.Seq
ATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACATTTCATAAAAAAAAA
AAAAAAAAAAAAAANTTAAAAANNCNNCTTTTTNGAAAAAAAAAA----------ANTTT
TTNNAAANNCCNNNNNCGGTNAANNNTANNNNNNTNNAANTTNAAGGTANNNNNNNCNTT
NANNATTNAAAANCAAAAATTCNANNATAAANAAGGTNTTCCNCCANANNAANAANGTNT
NATTTTNNNTGGTAANCAATTANAANATGNTNGNACTNTNTNTGATTACAATATCCAAAA
ANAATCANCTNTCCACTTGGTCNTCAGATTAAGAGGTGGTATGCAAATNTTTGTCAAAAC
ATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGATAATATTGAAAATGTTAN
ANCAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTTCGCTGG
TAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCT
CCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAA
GACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATNCA
AGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGA
GGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCT
CAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACT
CGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGG
TATCCCACCAGATCA
Length of connected seq. 905
Full length Seq ID -
Full length Seq. -
Length of full length seq. -