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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI892
Library SS
(Link to library)
Clone ID SSI892
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12814-1
Original site URL
Representative seq. ID SSI892E
(Link to Original site)
Representative DNA sequence 
>SSI892 (SSI892Q) /CSM/SS/SSI8-D/SSI892Q.Seq.d/
ATGAAAGTTCAACCATTCTCCCAATTTCTTGCTCAACAAGGTAAAATCTACTGGCCATTT
TTAGTTGGTGCAGGTGCTTGGGCTCTCATCATTACTAAAGTTCATATGGGTATTACTGAG
GAAAACAAAGCCAACTCATACTATTGGAAAAAAGTTCAAGCTATCAGAAACCCAGGTTCC
CACTCACATGGTCATGGTCACCACTAAATTTATTCTTTCAATTATATAATATAGGTGTTT
ATTTTTTTTTTAAAAAAAAAAAAAAGATATAAGATATAAAAACTATAAAAACTATAAAAA
AAAACTAAGAAAAAAAAAATAATAAAACAGT
sequence update 1998. 1.22
Translated Amino Acid sequence 
MKVQPFSQFLAQQGKIYWPFLVGAGAWALIITKVHMGITEENKANSYYWKKVQAIRNPGS
HSHGHGHH*iysfnyii*vfifflkkkkryki*kl*kl*kktkkkkiikq
Translated Amino Acid sequence (All Frames) 
Frame A:
MKVQPFSQFLAQQGKIYWPFLVGAGAWALIITKVHMGITEENKANSYYWKKVQAIRNPGS
HSHGHGHH*iysfnyii*vfifflkkkkryki*kl*kl*kktkkkkiikq


Frame B:
*kfnhspnfllnkvkstghf*lvqvlglssllkfiwvllrktkpthtigkkfklsetqvp
thmvmvttkfilsii*yrclfff*kkkkdiryknyknykkklrkkk**ns


Frame C:
esstilpiscstr*nllaifswcrclgshhy*ssygyy*gkqsqlilleksssyqkprfp
ltwswsplnlffqlynigvyfffkkkkki*diktiktikkn*ekknnkt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK360 (VSK360Q) /CSM/VS/VSK3-C/VSK360Q.Seq.d/                        478   e-134
VSH430 (VSH430Q) /CSM/VS/VSH4-B/VSH430Q.Seq.d/                        478   e-134
VSH165 (VSH165Q) /CSM/VS/VSH1-C/VSH165Q.Seq.d/                        478   e-134
VSD420 (VSD420Q) /CSM/VS/VSD4-A/VSD420Q.Seq.d/                        478   e-134
SSM807 (SSM807Q) /CSM/SS/SSM8-A/SSM807Q.Seq.d/                        478   e-134
SSJ444 (SSJ444Q) /CSM/SS/SSJ4-B/SSJ444Q.Seq.d/                        478   e-134
SSI892 (SSI892Q) /CSM/SS/SSI8-D/SSI892Q.Seq.d/                        478   e-134
SSI341 (SSI341Q) /CSM/SS/SSI3-B/SSI341Q.Seq.d/                        478   e-134
SSF163 (SSF163Q) /CSM/SS/SSF1-C/SSF163Q.Seq.d/                        478   e-134
SSB286 (SSB286Q) /CSM/SS/SSB2-D/SSB286Q.Seq.d/                        478   e-134
own update 2001. 3.24
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AQ413530|AQ413530.1 RPCI-11-172M23.TJ RPCI-11 Homo sapiens genomic cloneRPCI-11-172M23, genomic survey sequence.    38   2.4    2
AC021715|AC021715.4 Homo sapiens chromosome 14 clone RP11-171C4 map 14, WORKING DRAFT SEQUENCE, 13 unordered pieces.    38   2.6    4
AZ028305|AZ028305.1 RPCI-23-358J6.TJ RPCI-23 Mus musculus genomic clone RPCI-23-358J6, genomic survey sequence.    32   2.7    2
AQ350087|AQ350087.1 RPCI11-109D1.TJB RPCI-11 Homo sapiens genomic clone RPCI-11-109D1, genomic survey sequence.    38   3.5    2
AC092674|AC092674.2 Homo sapiens BAC clone RP11-625I7 from 4, complete sequence.    32   3.9    6
BX323848|BX323848.3 Mouse DNA sequence *** SEQUENCING CANCELLED *** from clone  RP23-446F10.    42   4.8    1
AL591586|AL591586.8 Mouse DNA sequence from clone RP23-126L18 on chromosome 2.    42   4.8    1
AZ522756|AZ522756.1 210PbE09 Pb MBN #21 Plasmodium berghei genomic 3', DNA sequence.    42   4.8    1
CD392476|CD392476.1 Gm_ck11646 Soybean induced by Salicylic Acid Glycine max cDNA 3', mRNA sequence.    42   4.8    1
AX344551|AX344551.1 Sequence 2 from Patent WO0200932.              42   4.8    1
dna update 2004. 2.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC109601_27(AC109601|pid:none) Oryza sativa chromosome 3 BAC OSJ...    38   0.098
EF147836_1(EF147836|pid:none) Populus trichocarpa clone WS0125_F...    37   0.22
EU958891_1(EU958891|pid:none) Zea mays clone 208231 unknown mRNA...    35   0.64
EU954255_1(EU954255|pid:none) Zea mays clone 1460261 unknown mRNA.     35   0.64
EU961353_1(EU961353|pid:none) Zea mays clone 234746 unknown mRNA.      35   0.64
EF145742_1(EF145742|pid:none) Populus trichocarpa clone WS0113_B...    35   0.64
AF063866_93(AF063866|pid:none) Melanoplus sanguinipes entomopoxv...    32   9.2
protein update 2009. 3. 6
PSORT 

 psg: 0.81  gvh: 0.60  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for SSI892 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSI892E
Full length Seq. 
>SSI892E.Seq
ATGAAAGTTCAACCATTCTCCCAATTTCTTGCTCAACAAGGTAAAATCTACTGGCCATTT
TTAGTTGGTGCAGGTGCTTGGGCTCTCATCATTACTAAAGTTCATATGGGTATTACTGAG
GAAAACAAAGCCAACTCATACTATTGGAAAAAAGTTCAAGCTATCAGAAACCCAGGTTCC
CACTCACATGGTCATGGTCACCACTAAATTTATTCTTTCAATTATATAATATAGGTGTTT
ATTTTTTTTTTAAAAAAAAAAAAAAGATATAAGATATAAAAACTATAAAAACTATAAAAA
AAAACTAAGAAAAAAAAAATAATAAAACAGT
Length of full length seq. 331