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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI887
Library SS
(Link to library)
Clone ID SSI887
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16307-1
Original site URL
Representative seq. ID SSI887Z
(Link to Original site)
Representative DNA sequence 
>SSI887 (SSI887Q) /CSM/SS/SSI8-D/SSI887Q.Seq.d/
XXXXXXXXXXATAAACATTTTTTTAAAACAAAATGACCAATAATCGTTTAAAGAATAGAA
AACAAAAACAATCAAAAAGCAATAATAACAACAATAATAATAATAATAATAATAATAATA
ATAATAATCGTCTTCATCATAATGATAGTAGTAATAATGTTGAAACTGATGAAACTATTA
CTTCTTCAAATAATACTGATAGTAGTCATCAAAAACAACCTCTAACTCATAATCGTCATC
ATAATCATAATCATAATCATCAAGATCATCATGATCTTTCTATTAATGATCATATGAATC
CTGATACTGGTGATATTAATTTCGATTCAAAAATCGATTATAAAGATGATGAAGCTTATA
ATTTAANACAATCATCACTACGTACTTCAATTTCTCGTAATGCTTCCCATGTAGATTTAG
GTCGTGTTTCTTCTCATAATGATTTAAATATAAGTAGAGGTTAAATT
sequence update 1998. 1.22
Translated Amino Acid sequence 
---*tff*NKMTNNRLKNRKQKQSKSNNNNNNNNNNNNNNNNRLHHNDSSNNVETDETIT
SSNNTDSSHQKQPLTHNRHHNHNHNHQDHHDLSINDHMNPDTGDINFDSKIDYKDDEAYN
LXQSSLRTSISRNASHVDLGRVSSHNDLNISRG*i
Translated Amino Acid sequence (All Frames) 
Frame A:
---*tff*NKMTNNRLKNRKQKQSKSNNNNNNNNNNNNNNNNRLHHNDSSNNVETDETIT
SSNNTDSSHQKQPLTHNRHHNHNHNHQDHHDLSINDHMNPDTGDINFDSKIDYKDDEAYN
LXQSSLRTSISRNASHVDLGRVSSHNDLNISRG*i


Frame B:
---khffktk*piiv*rienknnqkaiittiiiiiiiiiiiivfiimivvimlklmklll
lqiilivviknnl*liiviiiiiiiikiimifllmii*ililvilisiqksiikmmklii
*xnhhyvlqflvmlpm*i*vvfllimi*i*vevk


Frame C:
---niflkqndq*sfke*ktktikkq**qq***********ssss******c*n**nyyf
fk*y***sskttsns*sss*s*s*ssrss*sfy**syes*yw*y*frfknrl*r**sl*f
xtiittyfnfs*cfpcrfrscffs**fkyk*rln
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM554 (SSM554Q) /CSM/SS/SSM5-C/SSM554Q.Seq.d/                        381   e-105
SSI887 (SSI887Q) /CSM/SS/SSI8-D/SSI887Q.Seq.d/                        381   e-105
SLH502 (SLH502Q) /CSM/SL/SLH5-A/SLH502Q.Seq.d/                        381   e-105
SLH511 (SLH511Q) /CSM/SL/SLH5-A/SLH511Q.Seq.d/                         38   0.12
SSG865 (SSG865Q) /CSM/SS/SSG8-C/SSG865Q.Seq.d/                         36   0.46
SSG658 (SSG658Q) /CSM/SS/SSG6-C/SSG658Q.Seq.d/                         36   0.46
SLJ453 (SLJ453Q) /CSM/SL/SLJ4-C/SLJ453Q.Seq.d/                         36   0.46
SLI555 (SLI555Q) /CSM/SL/SLI5-C/SLI555Q.Seq.d/                         36   0.46
SHL670 (SHL670Q) /CSM/SH/SHL6-C/SHL670Q.Seq.d/                         36   0.46
CHI281 (CHI281Q) /CSM/CH/CHI2-D/CHI281Q.Seq.d/                         36   0.46
own update 2002.12.13
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF088979|AF088979.2 Dictyostelium discoideum beige protein homolog (lvsA) gene, complete cds.    36   0.14   3
AE014829|AE014829.1 Plasmodium falciparum 3D7 chromosome 10 section 1 of 7 of the complete sequence.    32   0.33   7
BX324134|BX324134.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    42   0.44   3
AL929359|AL929359.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 5/5.    32   0.56   7
AC115007|AC115007.4 Mus musculus clone RP24-188P11, WORKING DRAFT SEQUENCE, 3 unordered pieces.    44   1.7    1
AC138173|AC138173.1 Mus musculus chromosome 17 clone rp23-364j24 strain C57BL/6J, complete sequence.    44   1.7    1
CE030224|CE030224.1 tigr-gss-dog-17000347316856 Dog Library Canis familiaris genomic, genomic survey sequence.    44   1.7    1
AC119816|AC119816.5 Mus musculus, clone RP23-59B8, complete sequence.    44   1.7    1
CE097594|CE097594.1 tigr-gss-dog-17000371080821 Dog Library Canis familiaris genomic, genomic survey sequence.    44   1.7    1
CE710146|CE710146.1 tigr-gss-dog-17000369457188 Dog Library Canis familiaris genomic, genomic survey sequence.    44   1.7    1
dna update 2004. 2.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54HI2) RecName: Full=SPX and EXS domain-containing protein 4;       167   1e-40
(Q86HQ3) RecName: Full=SPX and EXS domain-containing protein 2; ...    41   0.015
AE014187_550(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    35   0.81
AB384894_1(AB384894|pid:none) Synthetic construct DNA, clone: pF...    33   4.0
(Q9UN75) RecName: Full=Protocadherin alpha-12;          Short=PC...    33   4.0
protein update 2009. 6.13
PSORT 

 psg: 0.36  gvh: 0.21  alm: 0.65  top: 0.53  tms: 0.00  mit: 0.48  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 24.0 %: mitochondrial

>> prediction for SSI887 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI887Z
3' end seq. 
>SSI887Z.Seq
----------ATAAACATTTTTTTAAAACAAAATGACCAATAATCGTTTAAAGAATAGAA
AACAAAAACAATCAAAAAGCAATAATAACAACAATAATAATAATAATAATAATAATAATA
ATAATAATCGTCTTCATCATAATGATAGTAGTAATAATGTTGAAACTGATGAAACTATTA
CTTCTTCAAATAATACTGATAGTAGTCATCAAAAACAACCTCTAACTCATAATCGTCATC
ATAATCATAATCATAATCATCAAGATCATCATGATCTTTCTATTAATGATCATATGAATC
CTGATACTGGTGATATTAATTTCGATTCAAAAATCGATTATAAAGATGATGAAGCTTATA
ATTTAANACAATCATCACTACGTACTTCAATTTCTCGTAATGCTTCCCATGTAGATTTAG
GTCGTGTTTCTTCTCATAATGATTTAAATATAAGTAGAGGTTAAATT
Length of 3' end seq. 457
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -