>SSI884 (SSI884Q) /CSM/SS/SSI8-D/SSI884Q.Seq.d/
ACGCCCTCAAAAAGTCTGATCCAAATGGTGTAGTTTCAAATCATTTGCATGCAAATGTTA
AGGTTGGCGATAAAGTTTTACTCTCCCCTCCAGCTGGTGACTATGTAGTCGACCAATTAT
CAAGCAATCCAATCCTTTTGGTTAGTGGTGGTGTTGGTATCACTCCATTATTAAGTATGG
CAAAGGCAACTTTAGCTAAACAACCAGAAAGAGAAGTCACCTTTGTTCACTCTTCAAAGA
ACAAACAATATCAACCATTTGCAAATGAATTATCCCAATTGGAAAAATCAAATAAAGTAA
AGGTATCAACTGTTCATTCTGAAACTGATGGTCAAATCACCAAAGAGAAGTTAGAAAAAT
TCATCAATCCTTCTCAAATTAAAGATACTAAAGTTTTCATCTGTGGTCCAGTATCTTTTA
TGTCTGCAATTAATAAACAATTAATTGAATTAGGTTATCCAAAAGAAAATATTTCTTATG
AAATTTTTGGTCCATTAACAAATGTATAAAAAAAAAAAXXXXXXXXXX

ALKKSDPNGVVSNHLHANVKVGDKVLLSPPAGDYVVDQLSSNPILLVSGGVGITPLLSMA
KATLAKQPEREVTFVHSSKNKQYQPFANELSQLEKSNKVKVSTVHSETDGQITKEKLEKF
INPSQIKDTKVFICGPVSFMSAINKQLIELGYPKENISYEIFGPLTNV*kk---

Frame A:
tpsksliqmv*fqiicmqmlrlaikfysplqlvtm*stnyqaiqsfwlvvvlvslhy*vw
qrql*lnnqkeksplftlqrtnninhlqmnypnwknqik*ryqlfilklmvkspkrs*kn
ssillklkilkfssvvqyllclqlinn*ln*viqkkiflmkflvh*qmykkk---


Frame B:
rpqkv*skwcsfksfackc*gwr*sftlpssw*lcsrpiikqsnpfg*wwcwyhsiikyg
kgnfs*ttrkrshlcslfkeqtistick*iipigkik*skgincsf*n*wsnhqrevrki
hqsfsn*ry*sfhlwssifyvcn**tin*irlskrkyfl*nfwsinkcikkk---


Frame C:
ALKKSDPNGVVSNHLHANVKVGDKVLLSPPAGDYVVDQLSSNPILLVSGGVGITPLLSMA
KATLAKQPEREVTFVHSSKNKQYQPFANELSQLEKSNKVKVSTVHSETDGQITKEKLEKF
INPSQIKDTKVFICGPVSFMSAINKQLIELGYPKENISYEIFGPLTNV*kk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI884 (SSI884Q) /CSM/SS/SSI8-D/SSI884Q.Seq.d/                       1005   0.0
VSH228 (VSH228Q) /CSM/VS/VSH2-B/VSH228Q.Seq.d/                        989   0.0
VSA370 (VSA370Q) /CSM/VS/VSA3-C/VSA370Q.Seq.d/                        989   0.0
VFF225 (VFF225Q) /CSM/VF/VFF2-B/VFF225Q.Seq.d/                        989   0.0
SLA171 (SLA171Q) /CSM/SL/SLA1-C/SLA171Q.Seq.d/                        989   0.0
FCL-AA17 (FCL-AA17Q) /CSM/FCL/FCL-AA/FCL-AA17Q.Seq.d/                 989   0.0
VSA808 (VSA808Q) /CSM/VS/VSA8-A/VSA808Q.Seq.d/                        987   0.0
SLC715 (SLC715Q) /CSM/SL/SLC7-A/SLC715Q.Seq.d/                        977   0.0
VSI227 (VSI227Q) /CSM/VS/VSI2-B/VSI227Q.Seq.d/                        969   0.0
VSD490 (VSD490Q) /CSM/VS/VSD4-D/VSD490Q.Seq.d/                        969   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB025583|AB025583.1 Dictyostelium discoideum DdFHa mRNA for flavohemoglobin, complete cds.   989   0.0    1
AB025584|AB025584.1 Dictyostelium discoideum DdFHb mRNA for flavohemoglobin, complete cds.    42   2e-06  3
AL954715|AL954715.11 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    34   0.017  7
AC131999|AC131999.6 Mus musculus chromosome 15 clone RP24-139E21 map 15, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    40   0.029  8
AL589743|AL589743.4 Human chromosome 14 DNA sequence BAC R-496I2 of library RPCI-11 from chromosome 14 of Homo sapiens (Human).    36   0.035  5
BX927230|BX927230.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    34   0.060  6
BX119965|BX119965.9 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP71-86I6.    34   0.12   7
AL035477|AL035477.6 Plasmodium falciparum MAL4P4.                  34   0.13   8
AC026941|AC026941.2 Homo sapiens chromosome 1 clone RP11-212B4 map 1, WORKING DRAFT SEQUENCE, 8 unordered pieces.    34   0.13   6
AC111610|AC111610.4 Rattus norvegicus clone CH230-233N5, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    44   0.13   6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB025584_1(AB025584|pid:none) Dictyostelium discoideum DdFHb mRN...   181   1e-44
CP000903_1350(CP000903|pid:none) Bacillus weihenstephanensis KBA...   119   6e-26
CP001186_1337(CP001186|pid:none) Bacillus cereus G9842, complete...   118   1e-25
(Q81FW4) RecName: Full=Flavohemoprotein; AltName: Full=Hemoglobi...   117   2e-25
AP009484_684(AP009484|pid:none) Macrococcus caseolyticus JCSC540...   117   2e-25
CP001176_1375(CP001176|pid:none) Bacillus cereus B4264, complete...   116   3e-25
BX294154_248(BX294154|pid:none) Rhodopirellula baltica SH 1 comp...   115   7e-25
(Q7UIY1) RecName: Full=Flavohemoprotein; AltName: Full=Hemoglobi...   115   7e-25
(Q73B49) RecName: Full=Flavohemoprotein; AltName: Full=Hemoglobi...   115   8e-25
AM398681_1804(AM398681|pid:none) Flavobacterium psychrophilum JI...   114   1e-24

 psg: 0.75  gvh: 0.44  alm: 0.32  top: 0.73  tms: 0.07  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.08  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SSI884 is nuc

>SSI884F.Seq
ACGCCCTCAAAAAGTCTGATCCAAATGGTGTAGTTTCAAATCATTTGCATGCAAATGTTA
AGGTTGGCGATAAAGTTTTACTCTCCCCTCCAGCTGGTGACTATGTAGTCGACCAATTAT
CAAGCAATCCAATCCTTTTGGTTAGTGGTGGTGTTGGTATCACTCCATTATTAAGTATGG
CAAAGGCAACTTTAGCTAAACAACCAGAAAGAGAAGTCACCTTTGTTCACTCTTCAAAGA
ACAAACAATATCAACCATTTGCAAATGAATTATCCCAATTGGAAAAATCAAATAAAGTAA
AGGTATCAACTGTTCATTCTGAAACTGATGGTCAAATCACCAAAGAGAAGTTAGAAAAAT
TCATCAATCCTTCTCAAATTAAAGATACTAAAGTTTTCATCTGTGGTCCAGTATCTTTTA
TGTCTGCAATTAATAAACAATTAATTGAATTAGGTTATCCAAAAGAAAATATTTCTTATG
AAATTTTTGGTCCATTAACAAATGTATAAAAAAAAAAA----------