>SSI883 (SSI883Q) /CSM/SS/SSI8-D/SSI883Q.Seq.d/
XXXXXXXXXXATGAAAGTATTTGTAATTCAAATGTTTGTAATATTCAAAATCAATGCTCA
TCAAATGGTACTTGTGTTCCAAAATCATCAAATGACTGTGGAATTGAATTAGATGGTCAA
GTTGATAAATGTAAAATTTATTCATGTGATTCAAATGGAGGTGTTGGTTGTATTAAAGAA
GATAAATGTAAACCAAGTAGTAATCCATGTATTTCAACTCAATGTAATGCTACTAACGGT
CAATGTTATGAAACTCAAATTCCAGGTGATATTTGTGATTGTGGTTGTGGTATTCCAGAA
AATAAATGTAAAGTATCATGGTGTACACCAGAAGGTATTTGTCAACCAAAATTCAAATCT
GAAATTGATGATAATAACTCTTGTACATTAGATTCATGCGATCCATGTACTGGTATTATC
TCTCATATGACCGCACCACAATGTTTAAGTTGTAATCAATGTTCAAATTAATTTTTAAAA
AATAAAATAAAAATGAGAAATAATTAAAATAATTAAAACAAATAAACATTAAAATGATAT
TTAGGTTTTAAATTTAAATTCTAAAATCACTATTAATTCT

---ESICNSNVCNIQNQCSSNGTCVPKSSNDCGIELDGQVDKCKIYSCDSNGGVGCIKED
KCKPSSNPCISTQCNATNGQCYETQIPGDICDCGCGIPENKCKVSWCTPEGICQPKFKSE
IDDNNSCTLDSCDPCTGIISHMTAPQCLSCNQCSN*flknkikmrnn*nn*nk*tlk*yl
gfkfkf*nhy*f

Frame A:
---*kyl*fkcl*ysksmlikwylcskiik*lwn*irwss**m*nlfm*fkwrcwly*rr
*m*tk**smyfnsm*cy*rsml*nsnsr*yl*lwlwysrk*m*simvytrrylstkiqi*
n****llyirfmrsmywyylsydrttmfkl*smfklifkk*nknek*lk*lkqinikmif
rf*i*ilkslli


Frame B:
---ESICNSNVCNIQNQCSSNGTCVPKSSNDCGIELDGQVDKCKIYSCDSNGGVGCIKED
KCKPSSNPCISTQCNATNGQCYETQIPGDICDCGCGIPENKCKVSWCTPEGICQPKFKSE
IDDNNSCTLDSCDPCTGIISHMTAPQCLSCNQCSN*flknkikmrnn*nn*nk*tlk*yl
gfkfkf*nhy*f


Frame C:
---kvfviqmfvifkinahqmvlvfqnhqmtveln*mvklinvkfihviqmevlvvlkki
nvnqvvihvfqlnvmlltvnvmklkfqvifvivvvvfqkinvkyhgvhqkvfvnqnsnlk
lmiitlvh*ihaihvlvlsli*phhnv*vvinvqinf*kik*k*eiikiiktnkh*ndi*
vlnlnskitins

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI883 (SSI883Q) /CSM/SS/SSI8-D/SSI883Q.Seq.d/                        900   0.0
SSI787 (SSI787Q) /CSM/SS/SSI7-D/SSI787Q.Seq.d/                        900   0.0
SSG476 (SSG476Q) /CSM/SS/SSG4-D/SSG476Q.Seq.d/                        900   0.0
SSE357 (SSE357Q) /CSM/SS/SSE3-C/SSE357Q.Seq.d/                        900   0.0
SSE159 (SSE159Q) /CSM/SS/SSE1-C/SSE159Q.Seq.d/                        900   0.0
SSC769 (SSC769Q) /CSM/SS/SSC7-C/SSC769Q.Seq.d/                        900   0.0
SFI559 (SFI559Q) /CSM/SF/SFI5-C/SFI559Q.Seq.d/                        900   0.0
AHF155 (AHF155Q) /CSM/AH/AHF1-C/AHF155Q.Seq.d/                        900   0.0
AFL264 (AFL264Q) /CSM/AF/AFL2-C/AFL264Q.Seq.d/                        900   0.0
AFK817 (AFK817Q) /CSM/AF/AFK8-A/AFK817Q.Seq.d/                        900   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32   2e-05  13
AC108595|AC108595.4 Rattus norvegicus clone CH230-216D22, WORKING DRAFT SEQUENCE, 2 unordered pieces.    56   6e-04  1
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38   0.002  10
AC013556|AC013556.3 Homo sapiens chromosome 8 clone RP11-13A10 map 8, WORKING DRAFT SEQUENCE, 7 unordered pieces.    38   0.003  7
D29637|D29637.1 Physarum polycephalum mitochondrial plasmid mF DNA.    36   0.004  4
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    40   0.013  12
AC105755|AC105755.4 Homo sapiens BAC clone RP11-46H14 from 4, complete sequence.    38   0.033  6
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    32   0.040  10
AC145920|AC145920.1 Pan troglodytes BAC clone RP43-10C15 from 7, complete sequence.    34   0.044  10
AE015942|AE015942.1 Clostridium tetani E88, section 7 of 10 of the complete genome.    34   0.045  8

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor;                320   1e-86
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                113   3e-24
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...    94   2e-18
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...    91   2e-17
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...    79   1e-13
(Q968Z6) RecName: Full=Protein psiA; AltName: Full=Prespore-cell...    69   9e-11
(Q55FQ2) RecName: Full=Putative uncharacterized protein DDB_G026...    62   1e-08
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                 60   6e-08
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli...    60   6e-08
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    57   3e-07

 psg: 0.75  gvh: 0.33  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SSI883 is cyt

>SSI883Z.Seq
----------ATGAAAGTATTTGTAATTCAAATGTTTGTAATATTCAAAATCAATGCTCA
TCAAATGGTACTTGTGTTCCAAAATCATCAAATGACTGTGGAATTGAATTAGATGGTCAA
GTTGATAAATGTAAAATTTATTCATGTGATTCAAATGGAGGTGTTGGTTGTATTAAAGAA
GATAAATGTAAACCAAGTAGTAATCCATGTATTTCAACTCAATGTAATGCTACTAACGGT
CAATGTTATGAAACTCAAATTCCAGGTGATATTTGTGATTGTGGTTGTGGTATTCCAGAA
AATAAATGTAAAGTATCATGGTGTACACCAGAAGGTATTTGTCAACCAAAATTCAAATCT
GAAATTGATGATAATAACTCTTGTACATTAGATTCATGCGATCCATGTACTGGTATTATC
TCTCATATGACCGCACCACAATGTTTAAGTTGTAATCAATGTTCAAATTAATTTTTAAAA
AATAAAATAAAAATGAGAAATAATTAAAATAATTAAAACAAATAAACATTAAAATGATAT
TTAGGTTTTAAATTTAAATTCTAAAATCACTATTAATTCT