>SSI881 (SSI881Q) /CSM/SS/SSI8-D/SSI881Q.Seq.d/
XXXXXXXXXXGATTCAGGTCAAGTTAAAGTTTTGGTTAATATAAGTAATTGGCAATATGA
AACATCATTAAATGTTTTACGTGCAGTTTTTAAATCTTCATCATTACCATCGAATAAAAC
CTCATCAAGCAATAGTTGTGGTGATTCTGACACTAGTACATTAGAAACTACAAATAATCA
ATATAATGCATTGTTATCATTTACATTCCAAAGAAATGGTGTAATTCTATATGGAGTTTT
CATTGATAAAATGCTATCAAATGGTAGAGTTGCAATATCAACCGTAGAGTCTTTACCTGA
TTATGGTGATTCCAATAATAATTATTTTGGAATAAATATGCCTCATTGTACCATATGTTT
ATTAGATCCAAATTTAGGACCTTTAGTTAATCCAGGTTTTGATTTNNCTGGAAGACCTTG
GGTATTACCTGTGTCATTAGTGGTTTCAATAGTTGGTGCTCTCATAATTTCAGTGAGTCT
TTTTGTTACTTTTAAAAAATATTATATTATTGCTCGTGATGGTAAAACAATTAAATTCTC
TAGAAGAAGAAAATCTAAAAGTAGTTCAAAAATGTCCACTCAATAGTTTTTATTTTAAAA
AAGTAATAAAATAAAATTAATTAATTTTTTAAAAAAAAAAAA

---SGQVKVLVNISNWQYETSLNVLRAVFKSSSLPSNKTSSSNSCGDSDTSTLETTNNQY
NALLSFTFQRNGVILYGVFIDKMLSNGRVAISTVESLPDYGDSNNNYFGINMPHCTICLL
DPNLGPLVNPGFDXXGRPWVLPVSLVVSIVGALIISVSLFVTFKKYYIIARDGKTIKFSR
RRKSKSSSKMSTQ*flf*ksnkiklinflkkk

Frame A:
---iqvklkfwli*vignmkhh*mfyvqflnlhhyhrikphqaivvviltlvh*klqiin
imhcyhlhskemv*fymefslikcyqmvelqyqp*slylimvipiiiile*iclivpyvy
*iqi*dl*liqvlixledlgyylch*wfq*lvls*fq*vfllllkniilllvmvkqlnsl
eeenlkvvqkcplnsfyfkkvik*n*lif*kkk


Frame B:
---frss*sfg*yk*lai*niikcftcsf*ifiitie*nlikq*lw*f*h*yirnyk*si
*civiiyipkkwcnsiwsfh**naikw*scninrrvft*lw*fq**lfwnkyaslyhmfi
rskfrtfs*srf*fxwktlgitcvisgfnswcshnfsesfcyf*kilyycs*w*nn*il*
kkki*k*fknvhsivfilkk**nkin*ffkkkk


Frame C:
---SGQVKVLVNISNWQYETSLNVLRAVFKSSSLPSNKTSSSNSCGDSDTSTLETTNNQY
NALLSFTFQRNGVILYGVFIDKMLSNGRVAISTVESLPDYGDSNNNYFGINMPHCTICLL
DPNLGPLVNPGFDXXGRPWVLPVSLVVSIVGALIISVSLFVTFKKYYIIARDGKTIKFSR
RRKSKSSSKMSTQ*flf*ksnkiklinflkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI881 (SSI881Q) /CSM/SS/SSI8-D/SSI881Q.Seq.d/                       1130   0.0
AFG755 (AFG755Q) /CSM/AF/AFG7-C/AFG755Q.Seq.d/                       1122   0.0
SSD513 (SSD513Q) /CSM/SS/SSD5-A/SSD513Q.Seq.d/                        880   0.0
SSH719 (SSH719Q) /CSM/SS/SSH7-A/SSH719Q.Seq.d/                        333   2e-90
CHO888 (CHO888Q) /CSM/CH/CHO8-D/CHO888Q.Seq.d/                         44   0.003
VHO120 (VHO120Q) /CSM/VH/VHO1-A/VHO120Q.Seq.d/                         40   0.041
VHN347 (VHN347Q) /CSM/VH/VHN3-B/VHN347Q.Seq.d/                         40   0.041
VHM358 (VHM358Q) /CSM/VH/VHM3-C/VHM358Q.Seq.d/                         40   0.041
VHL840 (VHL840Q) /CSM/VH/VHL8-B/VHL840Q.Seq.d/                         40   0.041
VHK121 (VHK121Q) /CSM/VH/VHK1-A/VHK121Q.Seq.d/                         40   0.041

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.  1122   0.0    11
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   3e-05  16
BX005374|BX005374.5 Zebrafish DNA sequence from clone DKEY-29H23 in linkage group 15.    38   3e-04  10
AR271569|AR271569.1 Sequence 1 from patent US 6503729.             36   0.003  18
AC108406|AC108406.3 Mus musculus clone RP24-327C20, WORKING DRAFT SEQUENCE, 3 ordered pieces.    44   0.007  5
AE014833|AE014833.1 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence.    32   0.007  13
AC147012|AC147012.2 Medicago truncatula clone mth2-151j16, WORKING DRAFT SEQUENCE, 11 unordered pieces.    38   0.009  6
AL356032|AL356032.4 Human chromosome 14 DNA sequence BAC R-802A16 of library RPCI-11  from chromosome 14 of Homo sapiens (Human).    34   0.010  9
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           42   0.012  19
AE014846|AE014846.1 Plasmodium falciparum 3D7 chromosome 12, section 3 of 9 of the complete sequence.    36   0.012  9

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso...    87   4e-16
AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso...    84   4e-15
AC117081_43(AC117081|pid:none) Dictyostelium discoideum chromoso...    80   4e-14
AC116960_61(AC116960|pid:none) Dictyostelium discoideum chromoso...    79   8e-14
AC117075_41(AC117075|pid:none) Dictyostelium discoideum chromoso...    78   2e-13
AC116982_41(AC116982|pid:none) Dictyostelium discoideum chromoso...    75   1e-12
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso...    70   4e-11
AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso...    68   3e-10
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso...    62   1e-08
AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso...    60   5e-08

 psg: 0.80  gvh: 0.52  alm: 0.16  top: 0.80  tms: 0.07  mit: 0.26  mip: 0.05
 nuc: 0.04  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.20  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SSI881 is cyt

>SSI881Z.Seq
----------GATTCAGGTCAAGTTAAAGTTTTGGTTAATATAAGTAATTGGCAATATGA
AACATCATTAAATGTTTTACGTGCAGTTTTTAAATCTTCATCATTACCATCGAATAAAAC
CTCATCAAGCAATAGTTGTGGTGATTCTGACACTAGTACATTAGAAACTACAAATAATCA
ATATAATGCATTGTTATCATTTACATTCCAAAGAAATGGTGTAATTCTATATGGAGTTTT
CATTGATAAAATGCTATCAAATGGTAGAGTTGCAATATCAACCGTAGAGTCTTTACCTGA
TTATGGTGATTCCAATAATAATTATTTTGGAATAAATATGCCTCATTGTACCATATGTTT
ATTAGATCCAAATTTAGGACCTTTAGTTAATCCAGGTTTTGATTTNNCTGGAAGACCTTG
GGTATTACCTGTGTCATTAGTGGTTTCAATAGTTGGTGCTCTCATAATTTCAGTGAGTCT
TTTTGTTACTTTTAAAAAATATTATATTATTGCTCGTGATGGTAAAACAATTAAATTCTC
TAGAAGAAGAAAATCTAAAAGTAGTTCAAAAATGTCCACTCAATAGTTTTTATTTTAAAA
AAGTAATAAAATAAAATTAATTAATTTTTTAAAAAAAAAAAA