>SSI880 (SSI880Q) /CSM/SS/SSI8-D/SSI880Q.Seq.d/
XXXXXXXXXXGAAGAGTATTAGCATATTCAAACGTTGGAACACCAGACTATACTGCACCA
GAAGTATTGATGAAAGATGGTTACAGTGCAGAGTGTGATTGGTGGAGTGTTGGTGTTATT
ATGTTTGAAATGTTGGTTGGTTATCCACCATTTTGTTCAGAATCAATTAGAGAAACCTAT
CATAAGATTATGAATTGGAAACAAACATTACCAAAAATCATGGAAGAAGCACAAGCAGAA
GTAAACTTAAGTCCAGAAGCACAAGATCTCATTGAACGTTTCCTCACCGATCCAATGACT
CGTATTGGTTTTAATGGTGTCGAGGAGATTCAATCTCATCCATTCTTTAAAGGTGTCGAT
TGGAGAAGACTAAGGGAAACCAGACCTCCAATCATTCCACAACTCTCTTCACCAACCGAT
ACTTCAAATTTTGATCACTATGAAGAGGAACAACAACCTGAACCAATGCAACCAGTTCAA
TCAAAATCAAGAAGAAAGATCACTTCTTTCGATATCCCTTTCATTGGTTACACTTATCGT
AATTTTGATGCCATGAGAGATGCCTTTGGTAGTGTAAACAGTAGAGATGCCTTTGGTAGT
ATAAATAGTAGAGAAGCTTTTGGTAGTATAAATAATAGAGATTCTTTANTAGTTGCATAT
ATGTAAACAGAACAAA

---RVLAYSNVGTPDYTAPEVLMKDGYSAECDWWSVGVIMFEMLVGYPPFCSESIRETYH
KIMNWKQTLPKIMEEAQAEVNLSPEAQDLIERFLTDPMTRIGFNGVEEIQSHPFFKGVDW
RRLRETRPPIIPQLSSPTDTSNFDHYEEEQQPEPMQPVQSKSRRKITSFDIPFIGYTYRN
FDAMRDAFGSVNSRDAFGSINSREAFGSINNRDSLXVAYM*teq

Frame A:
---ksisifkrwntrlyctrsiderwlqcrv*lvecwcyyv*nvgwlstilfrin*rnls
*dyeletnitknhgrstsrsklksrstrsh*tfphrsndsywf*wcrgdsissil*rcrl
ektkgnqtsnhsttlftnryfkf*sl*rgttt*tnatssikikkkdhffrypfhwlhls*
f*cherclw*ckq*rclw*yk**rsfw*yk**rffxsciyvnrt


Frame B:
---RVLAYSNVGTPDYTAPEVLMKDGYSAECDWWSVGVIMFEMLVGYPPFCSESIRETYH
KIMNWKQTLPKIMEEAQAEVNLSPEAQDLIERFLTDPMTRIGFNGVEEIQSHPFFKGVDW
RRLRETRPPIIPQLSSPTDTSNFDHYEEEQQPEPMQPVQSKSRRKITSFDIPFIGYTYRN
FDAMRDAFGSVNSRDAFGSINSREAFGSINNRDSLXVAYM*teq


Frame C:
---ey*hiqtlehqtilhqky**kmvtvqsviggvlvllclkcwlvihhfvqnqlekpii
rl*ignkhyqkswkkhkqk*t*vqkhkislnvsspiq*lvlvlmvsrrfnlihslkvsig
ed*gkpdlqsfhnslhqpilqilitmkrnnnlnqcnqfnqnqeersllsislslvtlivi
lmp*emplvv*tvemplvv*ivekllvv*iieilx*lhickqnk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI880 (SSI880Q) /CSM/SS/SSI8-D/SSI880Q.Seq.d/                       1314   0.0
CFJ206 (CFJ206Q) /CSM/CF/CFJ2-A/CFJ206Q.Seq.d/                       1261   0.0
CFF849 (CFF849Q) /CSM/CF/CFF8-C/CFF849Q.Seq.d/                       1257   0.0
SSM651 (SSM651Q) /CSM/SS/SSM6-C/SSM651Q.Seq.d/                       1223   0.0
VFO102 (VFO102Q) /CSM/VF/VFO1-A/VFO102Q.Seq.d/                       1185   0.0
CFE380 (CFE380Q) /CSM/CF/CFE3-D/CFE380Q.Seq.d/                       1150   0.0
SFF332 (SFF332Q) /CSM/SF/SFF3-B/SFF332Q.Seq.d/                       1142   0.0
SHK872 (SHK872Q) /CSM/SH/SHK8-C/SHK872Q.Seq.d/                       1076   0.0
CFA456 (CFA456Q) /CSM/CF/CFA4-C/CFA456Q.Seq.d/                       1047   0.0
VFO434 (VFO434Q) /CSM/VF/VFO4-B/VFO434Q.Seq.d/                        991   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX322632|BX322632.5 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-52G20.    74   2e-20  3
BX114811|BX114811.1 RZPD Homo sapiens cDNA clone IMAGp998B123866 = IMAGE:1526699 5' EST.    74   3e-12  2
CQ720245|CQ720245.1 Sequence 6179 from Patent WO02068579.          74   4e-12  2
E24614|E24614.1 warts Protein, polynucleotide encoding the protein, antisense polynucleotide thereof and antibody recognizing the protein.    74   6e-12  2
E24613|E24613.1 warts Protein, polynucleotide encoding the protein, antisense polynucleotide thereof and antibody recognizing the protein.    74   1e-11  2
AR407839|AR407839.1 Sequence 3 from patent US 6630613.             74   2e-11  2
AR310712|AR310712.1 Sequence 3 from patent US 6559285.             74   2e-11  2
AR201455|AR201455.1 Sequence 3 from patent US 6359193.             74   2e-11  2
AF164041|AF164041.1 Homo sapiens WARTS protein kinase (WARTS) mRNA, complete cds.    74   2e-11  2
AF104413|AF104413.1 Homo sapiens large tumor suppressor 1 (LATS1) mRNA, complete cds.    74   2e-11  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q6CFS5) RecName: Full=Serine/threonine-protein kinase CBK1;    ...   194   2e-48
FB811472_1(FB811472|pid:none) Sequence 30745 from Patent WO20080...   182   8e-45
BC151309_1(BC151309|pid:none) Bos taurus serine/threonine kinase...   181   1e-44
S42864(S42864)protein kinase (EC 2.7.1.-) - common ice plant (fr...   181   1e-44
AY335703_1(AY335703|pid:none) Synthetic construct Homo sapiens s...   181   2e-44
AK304862_1(AK304862|pid:none) Homo sapiens cDNA FLJ51774 complet...   181   2e-44
AK304755_1(AK304755|pid:none) Homo sapiens cDNA FLJ50384 complet...   181   2e-44
AM473649_2(AM473649|pid:none) Vitis vinifera contig VV78X065883....   180   3e-44
AC108873_10(AC108873|pid:none) Oryza sativa (japonica cultivar-g...   180   4e-44
BT065446_1(BT065446|pid:none) Zea mays full-length cDNA clone ZM...   179   9e-44

 psg: 0.81  gvh: 0.41  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for SSI880 is nuc

>SSI880Z.Seq
----------GAAGAGTATTAGCATATTCAAACGTTGGAACACCAGACTATACTGCACCA
GAAGTATTGATGAAAGATGGTTACAGTGCAGAGTGTGATTGGTGGAGTGTTGGTGTTATT
ATGTTTGAAATGTTGGTTGGTTATCCACCATTTTGTTCAGAATCAATTAGAGAAACCTAT
CATAAGATTATGAATTGGAAACAAACATTACCAAAAATCATGGAAGAAGCACAAGCAGAA
GTAAACTTAAGTCCAGAAGCACAAGATCTCATTGAACGTTTCCTCACCGATCCAATGACT
CGTATTGGTTTTAATGGTGTCGAGGAGATTCAATCTCATCCATTCTTTAAAGGTGTCGAT
TGGAGAAGACTAAGGGAAACCAGACCTCCAATCATTCCACAACTCTCTTCACCAACCGAT
ACTTCAAATTTTGATCACTATGAAGAGGAACAACAACCTGAACCAATGCAACCAGTTCAA
TCAAAATCAAGAAGAAAGATCACTTCTTTCGATATCCCTTTCATTGGTTACACTTATCGT
AATTTTGATGCCATGAGAGATGCCTTTGGTAGTGTAAACAGTAGAGATGCCTTTGGTAGT
ATAAATAGTAGAGAAGCTTTTGGTAGTATAAATAATAGAGATTCTTTANTAGTTGCATAT
ATGTAAACAGAACAAA