>SSI876 (SSI876Q) /CSM/SS/SSI8-D/SSI876Q.Seq.d/
AAATTGAATTTAAATTGGAGTTATTAAAACTTGAAAAAGAACATCAAGAAAAGTTAGAGA
AAGAAGGGTATAAACAAATTACTATTGGAAAAGGTTACACTGTTTTAAGTAAAGAAGAAA
AGCCTTTACAATCGGTTTCTTCCTTCAATAATCCAAAAAACGTATTTAATTTGGACCAAG
CTCTAACTGCTAATACCAATTTTGCCATTGATCGTCATATTAAAATGAAAGTTCCACCAG
ATCCATTGGTTTTTATTAAAATGCCTCGATCAAAATTAGTTTGGGCATGGGTGAAGATCT
CTACAGGTAGTTNNGTACTAGTTTAATAGGCAGTTTTACTCCTTGTGCTGCATATATGAG
ATACATTAAATCATATCCAGTTGTTGGTACCGTTGAACAAACTATGGAGAAGAAAAAAGG
CTTTACTTCAAGATTTAATGCCAGTACTGAAATTAAGGCAAGTGCATCAGCAGGGTTCTT
TGGTTGTGAAGCATCACTCGAAGTGACCACTGGTTTCGAATATGXXXXXXXXXX

IEFKLELLKLEKEHQEKLEKEGYKQITIGKGYTVLSKEEKPLQSVSSFNNPKNVFNLDQA
LTANTNFAIDRHIKMKVPPDPLVFIKMPRSKLVWAWVKISTGSXVLV**avlllvlhi*d
tlnhiqllvplnklwrrkkallqdlmpvlklrqvhqqgslvvkhhsk*plvsn---

Frame A:
klnlnwsy*nlkknikks*rkkginklllekvtlf*vkkkslynrflpsiiqktyliwtk
l*llipilplivilk*kfhqihwfllkcldqn*fghg*rslqvvxy*fnrqfyslcciye
ih*iisscwyr*tnygeekrlyfki*cqy*n*gkcisrvlwl*sitrsdhwfri---


Frame B:
n*i*igvikt*krtsrkvrerrv*tnyywkrlhcfk*rrkaftigfflq*skkri*fgps
snc*yqfch*ssy*nesstrsigfy*nasikislgmgedlyr*xxtsligsftpcaaymr
yiksypvvgtveqtmekkkgftsrfnasteikasasagffgceaslevttgfey---


Frame C:
IEFKLELLKLEKEHQEKLEKEGYKQITIGKGYTVLSKEEKPLQSVSSFNNPKNVFNLDQA
LTANTNFAIDRHIKMKVPPDPLVFIKMPRSKLVWAWVKISTGSXVLV**avlllvlhi*d
tlnhiqllvplnklwrrkkallqdlmpvlklrqvhqqgslvvkhhsk*plvsn---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI876 (SSI876Q) /CSM/SS/SSI8-D/SSI876Q.Seq.d/                       1027   0.0
VHG246 (VHG246Q) /CSM/VH/VHG2-B/VHG246Q.Seq.d/                        989   0.0
VFI774 (VFI774Q) /CSM/VF/VFI7-D/VFI774Q.Seq.d/                        989   0.0
VFH356 (VFH356Q) /CSM/VF/VFH3-C/VFH356Q.Seq.d/                        989   0.0
VFH148 (VFH148Q) /CSM/VF/VFH1-B/VFH148Q.Seq.d/                        989   0.0
VFF853 (VFF853Q) /CSM/VF/VFF8-C/VFF853Q.Seq.d/                        989   0.0
VFD740 (VFD740Q) /CSM/VF/VFD7-B/VFD740Q.Seq.d/                        989   0.0
VHD159 (VHD159Q) /CSM/VH/VHD1-C/VHD159Q.Seq.d/                        981   0.0
VFL719 (VFL719Q) /CSM/VF/VFL7-A/VFL719Q.Seq.d/                        981   0.0
VHA354 (VHA354Q) /CSM/VH/VHA3-C/VHA354Q.Seq.d/                        979   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X94341|X94341.1 D.discoideum mRNA for unknown protein with homology to spore  germination protein.   406   e-163  2
U48706|U48706.1 Dictyostelium discoideum small aggregate formation (smlA) gene, complete cds.    60   6e-18  4
M19469|M19469.1 Dictyostelium discoideum 109 gene 3, complete cds.    78   1e-10  1
AE010531|AE010531.1 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 73 of 197 of the complete genome.    38   0.061  4
AC140148|AC140148.1 Homo sapiens chromosome 5 clone RP11-580P10, WORKING DRAFT SEQUENCE, 35 unordered pieces.    34   0.22   8
AC099872|AC099872.1 Mus musculus clone RP23-8J6, LOW-PASS SEQUENCE SAMPLING.    38   0.24   2
AL589696|AL589696.10 Mouse DNA sequence from clone RP23-454M13 on chromosome 15.    42   0.26   6
AF451177|AF451177.1 AF451177 Bos taurus retinal pigment epithelium Bos taurus cDNA, mRNA sequence.    36   0.40   3
AC095288|AC095288.8 Rattus norvegicus clone CH230-16M18, WORKING DRAFT SEQUENCE, 3 unordered pieces.    36   0.43   6
AB083522|AB083522.1 Bacillus cereus cmk1 gene for probable transcriptional regulator, partial cds.    34   0.46   2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 834,653,744

 psg: 0.75  gvh: 0.19  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSI876 is nuc

>SSI876F.Seq
AAATTGAATTTAAATTGGAGTTATTAAAACTTGAAAAAGAACATCAAGAAAAGTTAGAGA
AAGAAGGGTATAAACAAATTACTATTGGAAAAGGTTACACTGTTTTAAGTAAAGAAGAAA
AGCCTTTACAATCGGTTTCTTCCTTCAATAATCCAAAAAACGTATTTAATTTGGACCAAG
CTCTAACTGCTAATACCAATTTTGCCATTGATCGTCATATTAAAATGAAAGTTCCACCAG
ATCCATTGGTTTTTATTAAAATGCCTCGATCAAAATTAGTTTGGGCATGGGTGAAGATCT
CTACAGGTAGTTNNGTACTAGTTTAATAGGCAGTTTTACTCCTTGTGCTGCATATATGAG
ATACATTAAATCATATCCAGTTGTTGGTACCGTTGAACAAACTATGGAGAAGAAAAAAGG
CTTTACTTCAAGATTTAATGCCAGTACTGAAATTAAGGCAAGTGCATCAGCAGGGTTCTT
TGGTTGTGAAGCATCACTCGAAGTGACCACTGGTTTCGAATATG----------