>SSI861 (SSI861Q) /CSM/SS/SSI8-C/SSI861Q.Seq.d/
XXXXXXXXXXTTAGTTGTTGGTGATATTGGTACTGGTAAACTTCAATTATTAAAAGATTT
GTTCATAATATATTCTCTATGCATTATAAATCAACCATTGGTGTAGATTTTGCATTAAAA
GTGATTAATTGGGATCCAAAAACCGAAGTTAGATTACAATTATGGGATATTGCAGGTCAA
GAAAGATTTGGATCAATGACAAGAGTTTATTATAAAGAAGCAGTTGGAGCAATGATTACA
TTTGATGTTACTAGAATGAGTACATTTGAAGCAGTTGCTAAATGGAAAGCAGATATTGAT
TCTAAAGTAACTTATGGTGCAGATGAAAAACCAATTCCAGTAGTTTTATTAGCAAACAAA
TGTGATTTAGGTAAAGATGCATTCATCAAGACTGCAAACGATATGGATAAATATTGTAAA
GATAATGGTTTCATTGGTTGGTTCGAAACTAGTGCTAAAGAAAATATGAATATTGAAAAA
GCAGCACGTTTCTTGGTTGATCATATCTTAAAGAATGATGTTAGAAGAAATCAACCAATT
GAAGGTACAATTCAACCAGGCGATCTCAATAAACAACCACAACCAACTTCAACTGGTCCA
AGTTGTTGTAAATAAAAAAAAAAAAAAATTTAAAAAATTTAAAAA

---scw*ywyw*TSIIKRFVHNIFSMHYKSTIGVDFALKVINWDPKTEVRLQLWDIAGQE
RFGSMTRVYYKEAVGAMITFDVTRMSTFEAVAKWKADIDSKVTYGADEKPIPVVLLANKC
DLGKDAFIKTANDMDKYCKDNGFIGWFETSAKENMNIEKAARFLVDHILKNDVRRNQPIE
GTIQPGDLNKQPQPTSTGPSCCK*kkkki*ki*k

Frame A:
---*llvilvlvnfny*kics*yilyal*inhwcrfciksd*lgsknrs*itimgycrsr
kiwindksll*rsswsndyi*cy*neyi*ssc*mesry*f*snlwcr*ktnsssfiskqm
*fr*rcihqdckryg*il*r*wfhwlvrn*c*rkyey*ksstflg*sylke*c*kkstn*
rynstrrsq*ttttnfnwskll*ikkkknlknlk


Frame B:
---scw*ywyw*TSIIKRFVHNIFSMHYKSTIGVDFALKVINWDPKTEVRLQLWDIAGQE
RFGSMTRVYYKEAVGAMITFDVTRMSTFEAVAKWKADIDSKVTYGADEKPIPVVLLANKC
DLGKDAFIKTANDMDKYCKDNGFIGWFETSAKENMNIEKAARFLVDHILKNDVRRNQPIE
GTIQPGDLNKQPQPTSTGPSCCK*kkkki*ki*k


Frame C:
---vvgdigtgklqllkdlfiiyslciinqplv*ilh*k*ligiqkpkldynygilqvkk
dldq*qefiikkqleq*lhlmlle*vhlkqllngkqililk*lmvqmknqfq*fy*qtnv
i*vkmhssrlqtiwinivkimvslvgsklvlkki*ilkkqhvswliis*rmmleeinqlk
vqfnqaisinnhnqlqlvqvvvnkkkkkfkkfk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI861 (SSI861Q) /CSM/SS/SSI8-C/SSI861Q.Seq.d/                       1195   0.0
SSC295 (SSC295Q) /CSM/SS/SSC2-D/SSC295Q.Seq.d/                       1181   0.0
SSH163 (SSH163Q) /CSM/SS/SSH1-C/SSH163Q.Seq.d/                       1168   0.0
SSF156 (SSF156Q) /CSM/SS/SSF1-C/SSF156Q.Seq.d/                       1100   0.0
SSC230 (SSC230Q) /CSM/SS/SSC2-B/SSC230Q.Seq.d/                       1053   0.0
SSF766 (SSF766Q) /CSM/SS/SSF7-C/SSF766Q.Seq.d/                       1027   0.0
SSA571 (SSA571Q) /CSM/SS/SSA5-C/SSA571Q.Seq.d/                       1027   0.0
SSG257 (SSG257Q) /CSM/SS/SSG2-C/SSG257Q.Seq.d/                        755   0.0
SSF581 (SSF581Q) /CSM/SS/SSF5-D/SSF581Q.Seq.d/                        533   e-150
SSL449 (SSL449Q) /CSM/SS/SSL4-C/SSL449Q.Seq.d/                        381   e-105

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF116859|AF116859.1 Dictyostelium discoideum small GTPase rabE (RabE) gene, complete cds.   852   0.0    3
U02925|U02925.1 Dictyostelium discoideum Ax3 Rab11 mRNA, complete cds.    46   7e-08  3
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    46   6e-07  9
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    52   9e-07  12
BG665453|BG665453.1 DRACDA09 Rat DRG Library Rattus norvegicus cDNA clone DRACDA09 5', mRNA sequence.    42   6e-06  3
AX300905|AX300905.1 Sequence 11 from Patent WO0185989.             62   1e-05  1
CK366760|CK366760.1 AGENCOURT_17148349 NIH_MGC_231 Rattus norvegicus cDNA clone IMAGE:7099841 5', mRNA sequence.    42   1e-05  3
CK478425|CK478425.1 AGENCOURT_17583314 NIH_MGC_232 Rattus norvegicus cDNA clone IMAGE:7121653 5', mRNA sequence.    42   1e-05  3
CK473545|CK473545.1 AGENCOURT_17620431 NIH_MGC_236 Rattus norvegicus cDNA clone IMAGE:7128825 5', mRNA sequence.    42   1e-05  3
AX827542|AX827542.1 Sequence 276 from Patent EP1344834.            42   4e-05  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC070513_1(BC070513|pid:none) Rattus norvegicus RAB38, member RA...   236   9e-62
AF136172_1(AF136172|pid:none) Homo sapiens rab-related GTP-bindi...   236   9e-62
(Q8QZZ8) RecName: Full=Ras-related protein Rab-38;  &AB232634_1(...   236   1e-61
DQ414572_1(DQ414572|pid:none) Suberites domuncula Rab32 gene, co...   233   2e-61
BC066502_1(BC066502|pid:none) Danio rerio RAB32, member RAS onco...   235   5e-61
BC049531_1(BC049531|pid:none) Danio rerio RAB32, member RAS onco...   231   8e-60
AK312202_1(AK312202|pid:none) Homo sapiens cDNA, FLJ92490, highl...   229   5e-59
AY890954_1(AY890954|pid:none) Synthetic construct Homo sapiens c...   228   8e-59
(Q13637) RecName: Full=Ras-related protein Rab-32;  &AF498958_1(...   228   8e-59
AY890955_1(AY890955|pid:none) Synthetic construct Homo sapiens c...   226   3e-58

 psg: 0.85  gvh: 0.31  alm: 0.48  top: 0.40  tms: 0.00  mit: 0.43  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 32.0 %: cytoplasmic
	 16.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SSI861 is mit

>SSI861Z.Seq
----------TTAGTTGTTGGTGATATTGGTACTGGTAAACTTCAATTATTAAAAGATTT
GTTCATAATATATTCTCTATGCATTATAAATCAACCATTGGTGTAGATTTTGCATTAAAA
GTGATTAATTGGGATCCAAAAACCGAAGTTAGATTACAATTATGGGATATTGCAGGTCAA
GAAAGATTTGGATCAATGACAAGAGTTTATTATAAAGAAGCAGTTGGAGCAATGATTACA
TTTGATGTTACTAGAATGAGTACATTTGAAGCAGTTGCTAAATGGAAAGCAGATATTGAT
TCTAAAGTAACTTATGGTGCAGATGAAAAACCAATTCCAGTAGTTTTATTAGCAAACAAA
TGTGATTTAGGTAAAGATGCATTCATCAAGACTGCAAACGATATGGATAAATATTGTAAA
GATAATGGTTTCATTGGTTGGTTCGAAACTAGTGCTAAAGAAAATATGAATATTGAAAAA
GCAGCACGTTTCTTGGTTGATCATATCTTAAAGAATGATGTTAGAAGAAATCAACCAATT
GAAGGTACAATTCAACCAGGCGATCTCAATAAACAACCACAACCAACTTCAACTGGTCCA
AGTTGTTGTAAATAAAAAAAAAAAAAAATTTAAAAAATTTAAAAA