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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI850
Library SS
(Link to library)
Clone ID SSI850
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01172-1
Original site URL
Representative seq. ID SSI850P
(Link to Original site)
Representative DNA sequence 
>SSI850 (SSI850Q) /CSM/SS/SSI8-C/SSI850Q.Seq.d/
AGTTTGTAAAGAATTTAATAAAGCAATTAATCATAAATTCTTATGGAAGATTAAATTATT
CCAATTTATTGAATTTTTTAATACAGAAAAATATGAATATGATTATAAAAAATGTTTTAA
AATTTGTTATCAAAATGAAAAGAATGAGAATAAAGGAGCAGCAGGTACATTTAAGATGGT
ACCATTTAGAGGACATTCACAACCTATTACATCCATTCAGCATATTGGTAATGTAATGTG
TACTGGTAGTGTTGATTCAACGGTAAAGGTATGGGATTTGTCATCGAAAAAAGGTACAAA
CACTCAAACATTTACAGGACATAGTGGAAGTGTTACATGTATTAAACAACGTCAATATTC
AGTTATATCAGGTAGTGATGATTGTTCAGTTAGAGTTTGGGATTTTGAGAAAGGTGTGGA
ATCAAATTGTTTGAAAACTGAATCACCAATTCTATCAATTGATTATAATGTGAATATCGG
GGGTGACGGTCAAATAATTGCAACTAATAAAGACACAATCCAAATTTGGGATCATAGGGA
TAAACAAAGTGGTGATGGTATGGTTGGGATTAGTGGTGAGGTGTTTTCCTCAAAGTTTCA
CTCAAACGGTCACCTATTCGTCCACACTAGTGATTATTTAGATTCATGGGATTTAAGAAG
ATTCGATAGACCAATACTCAGATTACCAAGCCCACAATGGTATCAXXXXXXXXXXTAATA
AAAAGATTTTAACAGGTTCCAAAGGTAATACTTTCAAAGTTTGGGGTAAACAATCTGGAA
ATCGTTTTTATTCATTACTTGGTGGTTCAAATATCGTTAATCCATCCGATCCAATTCCAT
TAACTCCTGGCTGTAGTTTAGTAAATTTTGATAGATCTCGTTTTTTTGGTGTTTTCAATA
ATTTAGTTAGATTTTTTAATTTTAATTTAGATTAATCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAATTAAAATAAAAAAAAAAAAAAAATGTATTAATTGATAA
sequence update 1998.11.12
Translated Amino Acid sequence 
VCKEFNKAINHKFLWKIKLFQFIEFFNTEKYEYDYKKCFKICYQNEKNENKGAAGTFKMV
PFRGHSQPITSIQHIGNVMCTGSVDSTVKVWDLSSKKGTNTQTFTGHSGSVTCIKQRQYS
VISGSDDCSVRVWDFEKGVESNCLKTESPILSIDYNVNIGGDGQIIATNKDTIQIWDHRD
KQSGDGMVGISGEVFSSKFHSNGHLFVHTSDYLDSWDLRRFDRPILRLPSPQWY---

---NKKILTGSKGNTFKVWGKQSGNRFYSLLGGSNIVNPSDPIPLTPGCSLVNFDRSRFF
GVFNNLVRFFNFNLD*skkkkkkkkkkkkkn*nkkkkkmy*li
Translated Amino Acid sequence (All Frames) 
Frame A:
sl*ri**sn*s*ilmed*iipiy*if*yrki*i*l*kmf*nllsk*ke*e*rssryi*dg
ti*rtfttyyihsayw*cnvyw*c*fngkgmgfviekrykhsniyrt*wkcymy*ttsif
syir***lfs*slgf*ercgiklfen*itnsin*l*ceyrg*rsnncn**rhnpnlgs*g
*tkw*wygwd*w*gvflkvslkrspirph**lfrfmgfkkir*tntqitkptmvs---

---**kdfnrfqr*yfqslg*tiwksflfitwwfkyr*sirsnsinswl*fskf**isff
wcfq*fs*if*f*frlikkkkkkkkkkkkkklk*kkkknvlid

Frame B:
VCKEFNKAINHKFLWKIKLFQFIEFFNTEKYEYDYKKCFKICYQNEKNENKGAAGTFKMV
PFRGHSQPITSIQHIGNVMCTGSVDSTVKVWDLSSKKGTNTQTFTGHSGSVTCIKQRQYS
VISGSDDCSVRVWDFEKGVESNCLKTESPILSIDYNVNIGGDGQIIATNKDTIQIWDHRD
KQSGDGMVGISGEVFSSKFHSNGHLFVHTSDYLDSWDLRRFDRPILRLPSPQWY---

---NKKILTGSKGNTFKVWGKQSGNRFYSLLGGSNIVNPSDPIPLTPGCSLVNFDRSRFF
GVFNNLVRFFNFNLD*skkkkkkkkkkkkkn*nkkkkkmy*li

Frame C:
fvknlikqliinsygrlnysnllnfliqknmnmiiknvlkfvikmkrmrikeqqvhlrwy
hledihnllhpfsilvm*cvlvvliqr*rygichrkkvqtlkhlqdivevlhvlnnvniq
lyqvvmivqlefgilrkvwnqiv*klnhqfyqliim*isgvtvk*lqliktqskfgiigi
nkvvmvwlglvvrcfpqsftqtvtysstlvii*ihgi*edsidqysdyqahngi---

---ikrf*qvpkvilskfgvnnleivfihylvvqislihpiqfh*llavv**ilidlvfl
vfsii*ldflili*inqkkkkkkkkkkkkkikikkkkkcin**
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI850 (SSI850Q) /CSM/SS/SSI8-C/SSI850Q.Seq.d/                       1653   0.0
SSM815 (SSM815Q) /CSM/SS/SSM8-A/SSM815Q.Seq.d/                        924   0.0
SLC509 (SLC509Q) /CSM/SL/SLC5-A/SLC509Q.Seq.d/                        650   0.0
SSA162 (SSA162Q) /CSM/SS/SSA1-C/SSA162Q.Seq.d/                        256   6e-67
SLJ663 (SLJ663Q) /CSM/SL/SLJ6-C/SLJ663Q.Seq.d/                        157   4e-37
SFC871 (SFC871Q) /CSM/SF/SFC8-C/SFC871Q.Seq.d/                         38   0.26
AFL183 (AFL183Q) /CSM/AF/AFL1-D/AFL183Q.Seq.d/                         38   0.26
VSB117 (VSB117Q) /CSM/VS/VSB1-A/VSB117Q.Seq.d/                         36   1.0
VHP774 (VHP774Q) /CSM/VH/VHP7-D/VHP774Q.Seq.d/                         36   1.0
VHP748 (VHP748Q) /CSM/VH/VHP7-B/VHP748Q.Seq.d/                         36   1.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BX005244|BX005244.12 Mouse DNA sequence from clone RP23-134F14 on chromosome X.    44  0.12  2
AL512454|AL512454.6 Human DNA sequence from clone RP11-446N2 on chromosome 6.    48  0.22  1
BX571878|BX571878.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    42  0.33  6
U61944|U61944.1 Caenorhabditis elegans cosmid T12E12.    38  0.42  4
BM541955|BM541955.1 AGENCOURT_6439075 NIH_MGC_71 Homo sapiens cDNA clone IMAGE:5531403 5', mRNA sequence.    38  0.49  2
AC140811|AC140811.1 Homo sapiens chromosome 16 clone RP11-1383H4, WORKING DRAFT SEQUENCE, 143 unordered pieces.    38  0.81  6
AC025686|AC025686.2 Homo sapiens chromosome 12 clone RP11-681J20 map 12, WORKING DRAFT SEQUENCE, 19 unordered pieces.    46  0.85  1
AV325097|AV325097.2 Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330400I22, 3' end partial sequence.    46  0.85  1
AC079310|AC079310.20 Homo sapiens 12q BAC RP11-850F7 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    46  0.85  1
AC097588|AC097588.2 Sus scrofa clone RP44-521I10, WORKING DRAFT SEQUENCE, 3 ordered pieces.    46  0.85  1
dna update 2003. 8. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001037_1323(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    75   2e-14
CP001099_1375(CP001099|pid:none) Chlorobaculum parvum NCIB 8327,...    74   3e-14
CP000492_814(CP000492|pid:none) Chlorobium phaeobacteroides DSM ...    70   2e-13
CP000828_5917(CP000828|pid:none) Acaryochloris marina MBIC11017,...    75   5e-12
AF323582_1(AF323582|pid:none) Podospora anserina beta transducin...    74   1e-11
(Q00659) RecName: Full=Sulfur metabolite repression control prot...    74   1e-11
U21220_1(U21220|pid:none) Emericella nidulans sulfur metabolite ...    74   1e-11
AF323584_1(AF323584|pid:none) Podospora anserina beta transducin...    74   1e-11
AF323583_1(AF323583|pid:none) Podospora anserina beta transducin...    74   1e-11
FN392320_711(FN392320|pid:none) Pichia pastoris GS115 chromosome...    73   2e-11
protein update 2009. 6.13
PSORT 

 psg: 0.72  gvh: 0.32  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSI850 is cyt
5' end seq. ID SSI850F
5' end seq. 
>SSI850F.Seq
AGTTTGTAAAGAATTTAATAAAGCAATTAATCATAAATTCTTATGGAAGATTAAATTATT
CCAATTTATTGAATTTTTTAATACAGAAAAATATGAATATGATTATAAAAAATGTTTTAA
AATTTGTTATCAAAATGAAAAGAATGAGAATAAAGGAGCAGCAGGTACATTTAAGATGGT
ACCATTTAGAGGACATTCACAACCTATTACATCCATTCAGCATATTGGTAATGTAATGTG
TACTGGTAGTGTTGATTCAACGGTAAAGGTATGGGATTTGTCATCGAAAAAAGGTACAAA
CACTCAAACATTTACAGGACATAGTGGAAGTGTTACATGTATTAAACAACGTCAATATTC
AGTTATATCAGGTAGTGATGATTGTTCAGTTAGAGTTTGGGATTTTGAGAAAGGTGTGGA
ATCAAATTGTTTGAAAACTGAATCACCAATTCTATCAATTGATTATAATGTGAATATCGG
GGGTGACGGTCAAATAATTGCAACTAATAAAGACACAATCCAAATTTGGGATCATAGGGA
TAAACAAAGTGGTGATGGTATGGTTGGGATTAGTGGTGAGGTGTTTTCCTCAAAGTTTCA
CTCAAACGGTCACCTATTCGTCCACACTAGTGATTATTTAGATTCATGGGATTTAAGAAG
ATTCGATAGACCAATACTCAGATTACCAAGCCCACAATGGTATCA----------
Length of 5' end seq. 705
3' end seq. ID SSI850Z
3' end seq. 
>SSI850Z.Seq
----------TAATAAAAAGATTTTAACAGGTTCCAAAGGTAATACTTTCAAAGTTTGGG
GTAAACAATCTGGAAATCGTTTTTATTCATTACTTGGTGGTTCAAATATCGTTAATCCAT
CCGATCCAATTCCATTAACTCCTGGCTGTAGTTTAGTAAATTTTGATAGATCTCGTTTTT
TTGGTGTTTTCAATAATTTAGTTAGATTTTTTAATTTTAATTTAGATTAATCAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAATAAAAAAAAAAAAAAAATGT
ATTAATTGATAA
Length of 3' end seq. 302
Connected seq. ID SSI850P
Connected seq. 
>SSI850P.Seq
AGTTTGTAAAGAATTTAATAAAGCAATTAATCATAAATTCTTATGGAAGATTAAATTATT
CCAATTTATTGAATTTTTTAATACAGAAAAATATGAATATGATTATAAAAAATGTTTTAA
AATTTGTTATCAAAATGAAAAGAATGAGAATAAAGGAGCAGCAGGTACATTTAAGATGGT
ACCATTTAGAGGACATTCACAACCTATTACATCCATTCAGCATATTGGTAATGTAATGTG
TACTGGTAGTGTTGATTCAACGGTAAAGGTATGGGATTTGTCATCGAAAAAAGGTACAAA
CACTCAAACATTTACAGGACATAGTGGAAGTGTTACATGTATTAAACAACGTCAATATTC
AGTTATATCAGGTAGTGATGATTGTTCAGTTAGAGTTTGGGATTTTGAGAAAGGTGTGGA
ATCAAATTGTTTGAAAACTGAATCACCAATTCTATCAATTGATTATAATGTGAATATCGG
GGGTGACGGTCAAATAATTGCAACTAATAAAGACACAATCCAAATTTGGGATCATAGGGA
TAAACAAAGTGGTGATGGTATGGTTGGGATTAGTGGTGAGGTGTTTTCCTCAAAGTTTCA
CTCAAACGGTCACCTATTCGTCCACACTAGTGATTATTTAGATTCATGGGATTTAAGAAG
ATTCGATAGACCAATACTCAGATTACCAAGCCCACAATGGTATCA----------TAATA
AAAAGATTTTAACAGGTTCCAAAGGTAATACTTTCAAAGTTTGGGGTAAACAATCTGGAA
ATCGTTTTTATTCATTACTTGGTGGTTCAAATATCGTTAATCCATCCGATCCAATTCCAT
TAACTCCTGGCTGTAGTTTAGTAAATTTTGATAGATCTCGTTTTTTTGGTGTTTTCAATA
ATTTAGTTAGATTTTTTAATTTTAATTTAGATTAATCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAATTAAAATAAAAAAAAAAAAAAAATGTATTAATTGATAA
Length of connected seq. 1007
Full length Seq ID -
Full length Seq. -
Length of full length seq. -