>SSI849 (SSI849Q) /CSM/SS/SSI8-C/SSI849Q.Seq.d/
CCTATCCCGACATTATAAAATTTTCAACATACAATAAATATAAAAAGTTTTAATATACAA
ATTATAAATCATATAATTTGTAAAATTAACAACCCACACCACACAAAAAAANNAAAAAAA
AAACAAAAAAAAACCAGACCACTCCACTCTNNTTATTTTTATAGTCTGAAATTGCCAAAA
TAATCAACACTTCATTATTTNATTTTTTTTATTATAATTTAATTAAATAAATATTTATAT
AAAATTTGTTTTTTTTTTTTTTATTTTCCTGATATTAAAAAAAAAAAAAAGAAATTAGAA
AAATCATTATATTAATAATTTAAAACGTTTAAAAAAAAAAAACAAATAAAGAAATAAAGA
AATAAAAAA

piptl*NFQHTINIKSFNIQIINHIICKINNPHHTKKXKKKQKKTRPLHSXYFYSLKLPK
*stlhyxiffiii*lnkylykicffffyfpdikkkkkkleksly**fktfkkkkqikk*r
nkk

Frame A:
piptl*NFQHTINIKSFNIQIINHIICKINNPHHTKKXKKKQKKTRPLHSXYFYSLKLPK
*stlhyxiffiii*lnkylykicffffyfpdikkkkkkleksly**fktfkkkkqikk*r
nkk


Frame B:
lsrhykifniq*i*kvliykl*ii*fvkltthttqkxxkknkkkpdhstlxifiv*ncqn
nqhfiixffll*fn*iniyikfvffffiflilkkkkrn*knhyinnlkrlkkknk*rnke
ik


Frame C:
ypdiikfstynkykkf*ytnyksynl*n*qptphkkxkkktkknqttplxlfl*seiaki
intslfxffyynlik*ifi*nlfffflfs*y*kkkkeirkiiilii*nv*kkktnkeikk
*k

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE586 (VSE586Q) /CSM/VS/VSE5-D/VSE586Q.Seq.d/                        206   2e-52
SSI849 (SSI849Q) /CSM/SS/SSI8-C/SSI849Q.Seq.d/                        206   2e-52
SSC852 (SSC852Q) /CSM/SS/SSC8-C/SSC852Q.Seq.d/                         48   9e-05
SSF216 (SSF216Q) /CSM/SS/SSF2-A/SSF216Q.Seq.d/                         44   0.001
VSD163 (VSD163Q) /CSM/VS/VSD1-C/VSD163Q.Seq.d/                         38   0.090
SSH880 (SSH880Q) /CSM/SS/SSH8-D/SSH880Q.Seq.d/                         38   0.090
SSM206 (SSM206Q) /CSM/SS/SSM2-A/SSM206Q.Seq.d/                         36   0.36
SLE690 (SLE690Q) /CSM/SL/SLE6-D/SLE690Q.Seq.d/                         36   0.36
SHI329 (SHI329Q) /CSM/SH/SHI3-B/SHI329Q.Seq.d/                         36   0.36
CHL887 (CHL887Q) /CSM/CH/CHL8-D/CHL887Q.Seq.d/                         36   0.36

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X51947|X51947.1 Dictyostelium discoideum P8A7 gene.              206  2e-84  4
AQ157814|AQ157814.1 nbxb0010K05r CUGI Rice BAC Library Oryza sativa genomic clone nbxb0010K05r, genomic survey sequence.    48  9e-04  2
BZ014680|BZ014680.1 oem74h01.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    36  0.012  2
BH972215|BH972215.1 odj23d09.g1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    36  0.012  2
AX356493|AX356493.1 Sequence 127 from Patent WO0181622.           38  0.016  5
AX347026|AX347026.1 Sequence 2097 from Patent WO0200928.          38  0.016  5
AC108077|AC108077.3 Homo sapiens BAC clone RP11-739G21 from 4, complete sequence.    48  0.077  1
AC145453|AC145453.2 Cicer arietinum clone cp1-18f4 strain ICC4958, WORKING DRAFT SEQUENCE, 2 ordered pieces.    40  0.085  6
AB009054|AB009054.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUL8.    42  0.22  3
AX767526|AX767526.1 Sequence 174 from Patent WO03044226.          34  0.44  4

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 200,972,514

 psg: 0.79  gvh: 0.20  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.45  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for SSI849 is nuc

>SSI849F.Seq
CCTATCCCGACATTATAAAATTTTCAACATACAATAAATATAAAAAGTTTTAATATACAA
ATTATAAATCATATAATTTGTAAAATTAACAACCCACACCACACAAAAAAAAAAAAAAAA
AAACAAAAAAAAACCAGACCACTCCACTCTATTTATTTTTATAGTCTGAAATTGCCAAAA
TAATCAACACTTCATTATTTAATTTTTTTTATTATAATTTAATTAAATAAATATTTATA-
---------

>SSI849Z.Seq
----------CAACCCACACCACACAAAAAAATTAAAAAAAAAACAAAAAAAAACCAGAC
CACTCCACTCTTATTATTTTTATAGTCTGAAATTGCCAAAATAATCAACACTTCATTATT
TTATTTTTTTTATTATAATTTAATTAAATAAATATTTATATAAAATTTGTTTTTTTTTTT
TTTATTTTCCTGATATTAAAAAAAAAAAAAAGAAATTAGAAAAATCATTATATTAATAAT
TTAAAACGTTTAAAAAAAAAAAACAAATAAAGAAATAAAGAAATAAAAAA

>SSI849P.Seq
CCTATCCCGACATTATAAAATTTTCAACATACAATAAATATAAAAAGTTTTAATATACAA
ATTATAAATCATATAATTTGTAAAATTAACAACCCACACCACACAAAAAAAAAAAAAAAA
AAACAAAAAAAAACCAGACCACTCCACTCTATTTATTTTTATAGTCTGAAATTGCCAAAA
TAATCAACACTTCATTATTTAATTTTTTTTATTATAATTTAATTAAATAAATATTTATA-
---------CAACCCACACCACACAAAAAAATTAAAAAAAAAACAAAAAAAAACCAGACC
ACTCCACTCTTATTATTTTTATAGTCTGAAATTGCCAAAATAATCAACACTTCATTATTT
TATTTTTTTTATTATAATTTAATTAAATAAATATTTATATAAAATTTGTTTTTTTTTTTT
TTATTTTCCTGATATTAAAAAAAAAAAAAAGAAATTAGAAAAATCATTATATTAATAATT
TAAAACGTTTAAAAAAAAAAAACAAATAAAGAAATAAAGAAATAAAAAA

>SSI849E.Seq
CCTATCCCGACATTATAAAATTTTCAACATACAATAAATATAAAAAGTTTTAATATACAA
ATTATAAATCATATAATTTGTAAAATTAACAACCCACACCACACAAAAAAANNAAAAAAA
AAACAAAAAAAAACCAGACCACTCCACTCTNNTTATTTTTATAGTCTGAAATTGCCAAAA
TAATCAACACTTCATTATTTNATTTTTTTTATTATAATTTAATTAAATAAATATTTATAT
AAAATTTGTTTTTTTTTTTTTTATTTTCCTGATATTAAAAAAAAAAAAAAGAAATTAGAA
AAATCATTATATTAATAATTTAAAACGTTTAAAAAAAAAAAACAAATAAAGAAATAAAGA
AATAAAAAA