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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI841
Library SS
(Link to library)
Clone ID SSI841
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U05349-1
Original site URL
Representative seq. ID SSI841Z
(Link to Original site)
Representative DNA sequence 
>SSI841 (SSI841Q) /CSM/SS/SSI8-B/SSI841Q.Seq.d/
XXXXXXXXXXTTAGAAATGTACTTAAAACTACAACAAATGTTGGTTTAAAAAATACAAGT
GGTTTAGTTTTTAGACAAACAAATGTTAATTTTTTAAAATCCTCAACAACCACAACAGCA
ATTAAAAGTGGAATTTTTGGAGAACTAATTACAAAAAGAAATTATCATGAAAGAGTATTG
GATCATTATAATAACCCAAGAAATATTGGGTCATTCGATAAGAAAGATATCGATGTTGGT
ACTGCAACCGTTGGTGCACCAGCATGTGGTGACGTTATGAAAATTCAAATCAAGGTAAAG
GAAAACATTGTTGTCGATGTTTGTTTCAAAACTTTTGGTTGTGGTTCTGCAATCGCTTCA
AGTTCATTGGCAACTGAATGGGTAAAAGGTAAAACATTAGATCAATGTCTCGAAATTAAA
AATACCGATATCGCAAAACATCTCTCACTTCCACCAGTAAAAATGCATTGTAGTATGCTT
GCCGAACAAGCTATCAAAAGAGCTATCTATGATTACAAAGTTAAACATGAAAAATTAAAT
TCATCTGAACAAACTACAATTGAAACTACTGCATCTTTGTAAATAATTTTAATAATTTAA
AAAAATAAATAAAAAAATAAAAAAATAAAAAAAAAAAA
sequence update 1998. 1.18
Translated Amino Acid sequence 
---RNVLKTTTNVGLKNTSGLVFRQTNVNFLKSSTTTTAIKSGIFGELITKRNYHERVLD
HYNNPRNIGSFDKKDIDVGTATVGAPACGDVMKIQIKVKENIVVDVCFKTFGCGSAIASS
SLATEWVKGKTLDQCLEIKNTDIAKHLSLPPVKMHCSMLAEQAIKRAIYDYKVKHEKLNS
SEQTTIETTASL*iilii*knk*knkkikkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---*kct*nynkcwfkkykwfsf*tnkc*ffkilnnhnsn*kwnfwrtnykkkls*ksig
sl**pkkywvir*eryrcwycnrwctsmw*ryensnqgkgkhccrclfqnfwlwfcnrfk
fign*mgkr*nirsmsrn*kyryrktsltstsknal*yacrtsyqksyl*lqs*t*kikf
i*tnyn*nycifvnnfnnlkk*ikk*knkkkk


Frame B:
---RNVLKTTTNVGLKNTSGLVFRQTNVNFLKSSTTTTAIKSGIFGELITKRNYHERVLD
HYNNPRNIGSFDKKDIDVGTATVGAPACGDVMKIQIKVKENIVVDVCFKTFGCGSAIASS
SLATEWVKGKTLDQCLEIKNTDIAKHLSLPPVKMHCSMLAEQAIKRAIYDYKVKHEKLNS
SEQTTIETTASL*iilii*knk*knkkikkk


Frame C:
---emylklqqmlv*kiqvv*fldkqmlif*npqqpqqqlkveflen*lqkeiimkeywi
iiitqeilghsirkismlvlqplvhqhvvtl*kfksr*rktllsmfvskllvvvlqslqv
hwqlng*kvkh*invsklkipisqnishfhq*kcivvclpnklskelsmitklnmkn*ih
lnklqlkllhlck*f**fkkinkkikk*kkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD315 (VSD315Q) /CSM/VS/VSD3-A/VSD315Q.Seq.d/                       1166   0.0
SSK562 (SSK562Q) /CSM/SS/SSK5-C/SSK562Q.Seq.d/                       1166   0.0
SSI841 (SSI841Q) /CSM/SS/SSI8-B/SSI841Q.Seq.d/                       1166   0.0
SSJ623 (SSJ623Q) /CSM/SS/SSJ6-A/SSJ623Q.Seq.d/                       1003   0.0
SSH360 (SSH360Q) /CSM/SS/SSH3-C/SSH360Q.Seq.d/                        565   e-160
SSC569 (SSC569Q) /CSM/SS/SSC5-C/SSC569Q.Seq.d/                         42   0.010
CFJ759 (CFJ759Q) /CSM/CF/CFJ7-C/CFJ759Q.Seq.d/                         38   0.16
VSJ817 (VSJ817Q) /CSM/VS/VSJ8-A/VSJ817Q.Seq.d/                         36   0.63
VSF836 (VSF836Q) /CSM/VS/VSF8-B/VSF836Q.Seq.d/                         36   0.63
SLJ883 (SLJ883Q) /CSM/SL/SLJ8-D/SLJ883Q.Seq.d/                         36   0.63
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BE921448|BE921448.1 EST425133 potato leaves and petioles Solanum tuberosum cDNA clone cSTB13J19 5' sequence, mRNA sequence.    44  2e-16  5
BF188623|BF188623.1 EST444910 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA45E24 5' sequence, mRNA sequence.    44  2e-16  5
BF188028|BF188028.1 EST444315 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA43O5 5' sequence, mRNA sequence.    44  4e-16  5
BG098716|BG098716.1 EST463235 sprouting eyes/shoots Solanum tuberosum cDNA clone cSTC5B3 5' sequence, mRNA sequence.    44  4e-16  5
BI176136|BI176136.1 EST517219 cSTS Solanum tuberosum cDNA clone cSTS27D22 5' sequence, mRNA sequence.    44  4e-16  5
BG594001|BG594001.1 EST492679 cSTS Solanum tuberosum cDNA clone cSTS6M7 5' sequence, mRNA sequence.    44  4e-16  5
BQ047062|BQ047062.1 EST596180 P. infestans-challenged potato leaf, incompatible reaction Solanum tuberosum cDNA clone BPLI16J5 5' end, mRNA sequence.    44  7e-16  5
BQ111941|BQ111941.2 EST597517 mixed potato tissues Solanum tuberosum cDNA clone STMCE12 5' end, mRNA sequence.    44  9e-16  5
BG098390|BG098390.1 EST462909 sprouting eyes/shoots Solanum tuberosum cDNA clone cSTC2D6 5' sequence, mRNA sequence.    44  1e-15  5
BG589584|BG589584.1 EST497426 P. infestans-challenged leaf Solanum tuberosum cDNA clone BPLI2C14 5' sequence, mRNA sequence.    44  1e-15  5
dna update 2003. 7.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GN111776_1(GN111776|pid:none) Sequence 16557 from Patent WO20090...   202   6e-51
EU952383_1(EU952383|pid:none) Zea mays clone 1279145 nifU-like N...   202   6e-51
BT040469_1(BT040469|pid:none) Zea mays full-length cDNA clone ZM...   202   8e-51
GN111528_1(GN111528|pid:none) Sequence 16309 from Patent WO20090...   200   2e-50
GN111710_1(GN111710|pid:none) Sequence 16491 from Patent WO20090...   199   5e-50
GN111536_1(GN111536|pid:none) Sequence 16317 from Patent WO20090...   199   5e-50
GN111772_1(GN111772|pid:none) Sequence 16553 from Patent WO20090...   198   9e-50
EF676161_1(EF676161|pid:none) Picea sitchensis clone WS02715_O21...   198   1e-49
GN111526_1(GN111526|pid:none) Sequence 16307 from Patent WO20090...   197   2e-49
AC120986_18(AC120986|pid:none) Oryza sativa (japonica cultivar-g...   196   4e-49
protein update 2009. 6.13
PSORT 

 psg: 0.72  gvh: 0.42  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.51  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for SSI841 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI841Z
3' end seq. 
>SSI841Z.Seq
----------TTAGAAATGTACTTAAAACTACAACAAATGTTGGTTTAAAAAATACAAGT
GGTTTAGTTTTTAGACAAACAAATGTTAATTTTTTAAAATCCTCAACAACCACAACAGCA
ATTAAAAGTGGAATTTTTGGAGAACTAATTACAAAAAGAAATTATCATGAAAGAGTATTG
GATCATTATAATAACCCAAGAAATATTGGGTCATTCGATAAGAAAGATATCGATGTTGGT
ACTGCAACCGTTGGTGCACCAGCATGTGGTGACGTTATGAAAATTCAAATCAAGGTAAAG
GAAAACATTGTTGTCGATGTTTGTTTCAAAACTTTTGGTTGTGGTTCTGCAATCGCTTCA
AGTTCATTGGCAACTGAATGGGTAAAAGGTAAAACATTAGATCAATGTCTCGAAATTAAA
AATACCGATATCGCAAAACATCTCTCACTTCCACCAGTAAAAATGCATTGTAGTATGCTT
GCCGAACAAGCTATCAAAAGAGCTATCTATGATTACAAAGTTAAACATGAAAAATTAAAT
TCATCTGAACAAACTACAATTGAAACTACTGCATCTTTGTAAATAATTTTAATAATTTAA
AAAAATAAATAAAAAAATAAAAAAATAAAAAAAAAAAA
Length of 3' end seq. 628
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -