>SSI840 (SSI840Q) /CSM/SS/SSI8-B/SSI840Q.Seq.d/
XXXXXXXXXXATAATAATAAAATGTCAGAAAGTGTAGGGAATATAAGAATTGACCCAAGG
GATACAATATTTGCAAAAATTATTTCTGGTGCAATCCCATCAAAAAAATTTTACGATGAT
GAATATTGTATTGCAATCGAAGATATTAACCCACAAGCACCAGTACATCTTTTAGTTATG
CCAAAACTTGCCGTTGGTGGTCTTAGTGATGTCGCCAATGTTGACCTTGAAAAATACAAA
GAATCTATGGGTCATATCATGTCAAAAATTCATCATATCGCTTCTCTTAAAGGTGCTGAT
TCTTACAGATTGGTCATTAATGAAGGTGTTTTAGGTCAACAATCTGTTAGATGGTTACAT
ATTCATATCCTTGGTGGTAGACAAATGAATTGGCCACCAGGCTAATTTCAATTAAAGAAT
TCTTCATTGTACCTATTTAAACCTTTTACTAATAATAGTAAAGAAAATTCACCATTGGCA
CGTACATAATAAAAAAATATATCCTTTTAATGGATCACTAGC

---NNKMSESVGNIRIDPRDTIFAKIISGAIPSKKFYDDEYCIAIEDINPQAPVHLLVMP
KLAVGGLSDVANVDLEKYKESMGHIMSKIHHIASLKGADSYRLVINEGVLGQQSVRWLHI
HILGGRQMNWPPG*fqlknsslylfkpftnnskensplart**knisf*wits

Frame A:
---***nvrkcreykn*pkgynicknyfwcnpikkilr**ilycnrry*ptststsfsya
ktcrwws**crqc*p*kiqriygsyhvknssyrfs*rc*flqigh**rcfrstic*mvty
sypww*tnelatrlisikeffivpi*tfy****rkftigtyiikkyillmdh*


Frame B:
---NNKMSESVGNIRIDPRDTIFAKIISGAIPSKKFYDDEYCIAIEDINPQAPVHLLVMP
KLAVGGLSDVANVDLEKYKESMGHIMSKIHHIASLKGADSYRLVINEGVLGQQSVRWLHI
HILGGRQMNWPPG*fqlknsslylfkpftnnskensplart**knisf*wits


Frame C:
---iikcqkv*gi*eltqgiqylqklflvqshqknftmmnivlqskilthkhqyif*lcq
nlplvvlvmspmltlkntknlwviscqkfiislllkvliltdwslmkvf*vnnlldgyif
islvvdk*ighqanfn*rilhctylnllliivkkihhwhvhnkkiypfngsl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI840 (SSI840Q) /CSM/SS/SSI8-B/SSI840Q.Seq.d/                        932   0.0
SSK564 (SSK564Q) /CSM/SS/SSK5-C/SSK564Q.Seq.d/                        924   0.0
SSJ812 (SSJ812Q) /CSM/SS/SSJ8-A/SSJ812Q.Seq.d/                        924   0.0
SSI289 (SSI289Q) /CSM/SS/SSI2-D/SSI289Q.Seq.d/                        924   0.0
SSH491 (SSH491Q) /CSM/SS/SSH4-D/SSH491Q.Seq.d/                        924   0.0
SSH481 (SSH481Q) /CSM/SS/SSH4-D/SSH481Q.Seq.d/                        924   0.0
SSH478 (SSH478Q) /CSM/SS/SSH4-D/SSH478Q.Seq.d/                        924   0.0
SSH331 (SSH331Q) /CSM/SS/SSH3-B/SSH331Q.Seq.d/                        924   0.0
SSG652 (SSG652Q) /CSM/SS/SSG6-C/SSG652Q.Seq.d/                        924   0.0
SSF275 (SSF275Q) /CSM/SS/SSF2-D/SSF275Q.Seq.d/                        924   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AB029922|AB029922.1 Dictyostelium discoideum DD-1 mRNA, complete cds.   749  0.0  3
U61986|U61986.1 Dictyostelium discoideum PkiA (pkiA) mRNA, complete cds.   511  0.0  5
BH605184|BH605184.1 BOGSB09TR BOGS Brassica oleracea genomic clone BOGSB09, DNA sequence.    48  0.006  2
BH724763|BH724763.1 BOMPT20TF BO_2_3_KB Brassica oleracea genomic clone BOMPT20, DNA sequence.    48  0.11  1
AF056206|AF056206.1 Plasmodium falciparum putative protein kinase C interacting protein 1 (pkci1) gene, complete cds.    44  0.15  2
AC140306|AC140306.1 Mus musculus chromosome UNK clone RP23-386L13, WORKING DRAFT SEQUENCE, 9 unordered pieces.    46  0.43  1
BX219259|BX219259.1 Danio rerio genomic clone DKEY-47E15, genomic survey sequence.    46  0.43  1
AZ977287|AZ977287.1 2M0253G10F Mouse 10kb plasmid UUGC2M library Mus musculus genomic clone UUGC2M0253G10 F, DNA sequence.    46  0.43  1
AC127889|AC127889.3 Rattus norvegicus clone CH230-245D21, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  0.82  3
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.           44  0.85  8

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q23921) RecName: Full=Protein pkiA; AltName: Full=Protein DD-1;...   259   4e-68
U61986_1(U61986|pid:none) Dictyostelium discoideum PkiA (pkiA) m...   239   3e-62
BC068885_1(BC068885|pid:none) Xenopus laevis hypothetical protei...   114   1e-24
FN314883_1(FN314883|pid:none) Schistosoma japonicum isolate Anhu...   114   2e-24
FN314882_1(FN314882|pid:none) Schistosoma japonicum isolate Anhu...   112   4e-24
AY812855_1(AY812855|pid:none) Schistosoma japonicum SJCHGC07198 ...   112   5e-24
BC135760_1(BC135760|pid:none) Xenopus tropicalis cDNA clone IMAG...   112   5e-24
AY860950_1(AY860950|pid:none) Bombyx mori protein kinase c inhib...   110   2e-23
BA000045_929(BA000045|pid:none) Gloeobacter violaceus PCC 7421 D...   109   5e-23
(Q8SQ21) RecName: Full=Histidine triad nucleotide-binding protei...   108   6e-23

 psg: 0.59  gvh: 0.37  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSI840 is cyt

>SSI840Z.Seq
----------ATAATAATAAAATGTCAGAAAGTGTAGGGAATATAAGAATTGACCCAAGG
GATACAATATTTGCAAAAATTATTTCTGGTGCAATCCCATCAAAAAAATTTTACGATGAT
GAATATTGTATTGCAATCGAAGATATTAACCCACAAGCACCAGTACATCTTTTAGTTATG
CCAAAACTTGCCGTTGGTGGTCTTAGTGATGTCGCCAATGTTGACCTTGAAAAATACAAA
GAATCTATGGGTCATATCATGTCAAAAATTCATCATATCGCTTCTCTTAAAGGTGCTGAT
TCTTACAGATTGGTCATTAATGAAGGTGTTTTAGGTCAACAATCTGTTAGATGGTTACAT
ATTCATATCCTTGGTGGTAGACAAATGAATTGGCCACCAGGCTAATTTCAATTAAAGAAT
TCTTCATTGTACCTATTTAAACCTTTTACTAATAATAGTAAAGAAAATTCACCATTGGCA
CGTACATAATAAAAAAATATATCCTTTTAATGGATCACTAGC