>SSI830 (SSI830Q) /CSM/SS/SSI8-B/SSI830Q.Seq.d/
AAAAAATTTATAAAAATAAAAATTATTAATTTCAAATAAATTAAAAGATAGAAGAAAATG
ACTGATAATTGGGATAAAGAAAAACTTGCTAAAAAAGCAGCAGAAGGTTTAAAGAATGCC
AAGAATACTGCATCCTCATATGCCTCTGGAATAAATGCATCAAAAGATCAATTAAATTCA
AATTTCAAAAATATTAAAGAGAACATTTCAAGCAATTTGAATAATGCCAAACATACTATT
GAAGAAAATGTCCATAATGCTCAAAGAACCGGTTATCCACCAAAGGTACCAGCTCCTGGA
TCAAATAAATTCATTGGTTTCCTAGCTTTGGGTGTATTTGGTTTATTTGCTTGGAAATTC
TATGAAGGAAAGAAATACAAAGAGAATGAACAAAAATTAATTAAACAAAAACATTAAAAA
AAAAAAAAAAAAAAAATTTAGTTTTTGTATAAAAAAAAAACAAA

kkfikikiinfk*ikr*KKMTDNWDKEKLAKKAAEGLKNAKNTASSYASGINASKDQLNS
NFKNIKENISSNLNNAKHTIEENVHNAQRTGYPPKVPAPGSNKFIGFLALGVFGLFAWKF
YEGKKYKENEQKLIKQKH*kkkkkki*flykkkt

Frame A:
kkfikikiinfk*ikr*KKMTDNWDKEKLAKKAAEGLKNAKNTASSYASGINASKDQLNS
NFKNIKENISSNLNNAKHTIEENVHNAQRTGYPPKVPAPGSNKFIGFLALGVFGLFAWKF
YEGKKYKENEQKLIKQKH*kkkkkki*flykkkt


Frame B:
knl*k*kllisnklkdrrk*liigikknllkkqqkv*rmprilhphmple*mhqkin*iq
iskilkrtfqai*impnillkkmsimlkepvihqryqlldqinslvs*lwvylvyllgns
mkerntkrmnkn*lnknikkkkkkkfsfcikkkq


Frame C:
kiyknkny*fqin*kieend**lg*rktc*kssrrfkecqeyciliclwnkcikrsikfk
fqky*rehfkqfe*cqtyy*rkcp*csknrlstkgtsswik*ihwfpsfgciwficleil
*rkeiqre*tkin*tktlkkkkkknlvfv*kknk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM768 (SSM768Q) /CSM/SS/SSM7-C/SSM768Q.Seq.d/                        632   e-180
SSK829 (SSK829Q) /CSM/SS/SSK8-B/SSK829Q.Seq.d/                        632   e-180
SSJ861 (SSJ861Q) /CSM/SS/SSJ8-C/SSJ861Q.Seq.d/                        632   e-180
SSJ338 (SSJ338Q) /CSM/SS/SSJ3-B/SSJ338Q.Seq.d/                        632   e-180
SSI830 (SSI830Q) /CSM/SS/SSI8-B/SSI830Q.Seq.d/                        632   e-180
SSI657 (SSI657Q) /CSM/SS/SSI6-C/SSI657Q.Seq.d/                        632   e-180
SSI547 (SSI547Q) /CSM/SS/SSI5-B/SSI547Q.Seq.d/                        632   e-180
SSH508 (SSH508Q) /CSM/SS/SSH5-A/SSH508Q.Seq.d/                        632   e-180
SSG891 (SSG891Q) /CSM/SS/SSG8-D/SSG891Q.Seq.d/                        632   e-180
SSG837 (SSG837Q) /CSM/SS/SSG8-B/SSG837Q.Seq.d/                        632   e-180

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AV234950|AV234950.1 Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732401F15, 3' end partial sequence.    52  0.006  1
AZ522713|AZ522713.1 210PbA05 Pb MBN #21 Plasmodium berghei genomic 3', DNA sequence.    42  0.056  2
BM164672|BM164672.1 EST567195 PyBS Plasmodium yoelii yoelii cDNA clone PYCLX63 5' end, mRNA sequence.    42  0.075  2
CC116108|CC116108.1 NDL.93C13.T7 Notre Dame Liverpool Aedes aegypti genomic clone NDL.93C13, DNA sequence.    46  0.38  1
BZ061179|BZ061179.1 lkf38c10.g1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    46  0.38  1
AC006714|AC006714.3 Caenorhabditis elegans cosmid Y119D3B, complete sequence.    46  0.38  1
AC122325|AC122325.3 Mus musculus chromosome UNK clone RP23-334H17, WORKING DRAFT SEQUENCE, 3 unordered pieces.    46  0.38  1
BH968635|BH968635.1 odd98d12.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    46  0.38  1
AC103249|AC103249.5 Rattus norvegicus clone CH230-151B16, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  0.70  6
AC013036|AC013036.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    40  0.78  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017308_577(AE017308|pid:none) Mycoplasma mobile 163K complete ...    37   0.16
(Q80WK7) RecName: Full=Equilibrative nucleoside transporter 3; A...    35   0.62
BC078678_1(BC078678|pid:none) Rattus norvegicus solute carrier f...    35   0.62
AL844507_240(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    35   0.81
EF145887_1(EF145887|pid:none) Populus trichocarpa clone WS0114_A...    33   3.1
CP000768_40(CP000768|pid:none) Campylobacter jejuni subsp. doyle...    33   3.1
AC116305_7(AC116305|pid:none) Dictyostelium discoideum chromosom...    33   4.0
AM458473_6(AM458473|pid:none) Vitis vinifera contig VV78X094999....    33   4.0
AL844505_83(AL844505|pid:none) Plasmodium falciparum 3D7 chromos...    33   4.0
(Q14JW6) RecName: Full=Lipid A export ATP-binding/permease prote...    32   5.2

 psg: 0.58  gvh: 0.40  alm: 0.31  top: 0.47  tms: 0.07  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: mitochondrial
	 24.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: Golgi
	 12.0 %: endoplasmic reticulum
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SSI830 is mit

>SSI830E.Seq
AAAAAATTTATAAAAATAAAAATTATTAATTTCAAATAAATTAAAAGATAGAAGAAAATG
ACTGATAATTGGGATAAAGAAAAACTTGCTAAAAAAGCAGCAGAAGGTTTAAAGAATGCC
AAGAATACTGCATCCTCATATGCCTCTGGAATAAATGCATCAAAAGATCAATTAAATTCA
AATTTCAAAAATATTAAAGAGAACATTTCAAGCAATTTGAATAATGCCAAACATACTATT
GAAGAAAATGTCCATAATGCTCAAAGAACCGGTTATCCACCAAAGGTACCAGCTCCTGGA
TCAAATAAATTCATTGGTTTCCTAGCTTTGGGTGTATTTGGTTTATTTGCTTGGAAATTC
TATGAAGGAAAGAAATACAAAGAGAATGAACAAAAATTAATTAAACAAAAACATTAAAAA
AAAAAAAAAAAAAAAATTTAGTTTTTGTATAAAAAAAAAACAAA