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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI820
Library SS
(Link to library)
Clone ID SSI820
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SSI820E
(Link to Original site)
Representative DNA sequence 
>SSI820 (SSI820Q) /CSM/SS/SSI8-A/SSI820Q.Seq.d/
CAACAAATTAAAAACTCAATTAAAAAATGAAATTATTATTTGTTTTATTATCTCTTCTTT
TAATATTTTCAGTATTGGTACAATCTGAAACAGCCTATTTTGGTTTAAAAACCCATGGTG
ACCATAATGATTTTATTTTCAAATTAACAGATTCAGAAAAAATTAAAAAAGCCAGAGATA
TTTTGTCTGGAAAGGAAACCAATGAAGTTCATGTAATGGGTAGAATTAGAAAGAGACCTG
AAAGCTATAATCCAAAGTATTCCTTTATTCTTGACCCAGATACAATCACATTTTTTTCCA
TGGCTATTGAAGTTTGTGATGCTTCAACTATTTATGTAGAAGATCACCTTGATGAGGCCT
GTGGTGCTTTCCTCCCAGGTTGCTTCTGGTGCCCATGGTCTTCAAAACTAACAAGAGAAA
TTAAAATTTAAACTATAAGAGTAAAATTAAATTACTCATGATTAAATTTAATCAAATTAA
ATACTTAAATATTTAATAATAAAGTTTATTAAACAAAAGTTTTTATAAAAAAAAAATAAA
AAAAAAAAAAAAA
sequence update 1998. 1.16
Translated Amino Acid sequence 
tn*kln*KMKLLFVLLSLLLIFSVLVQSETAYFGLKTHGDHNDFIFKLTDSEKIKKARDI
LSGKETNEVHVMGRIRKRPESYNPKYSFILDPDTITFFSMAIEVCDASTIYVEDHLDEAC
GAFLPGCFWCPWSSKLTREIKI*tirvklnys*lnliklnt*ifnnkvy*tkvfikkk*k
kkk
Translated Amino Acid sequence (All Frames) 
Frame A:
qqiknsikk*nyylfyylff*yfqywynlkqpilv*kpmvtimilfsn*qiqkklkkpei
fclerkpmkfm*wvelerdlkaiiqsiplfltqiqshffpwllkfvmlqlfm*kitlmrp
vvlssqvasgahglqn*qeklkfkl*e*n*ithd*i*sn*ilkyliikfikqkfl*kknk
kkkk


Frame B:
nklktqlkneiiicfiissfnifsigti*nslfwfknpw*p**fyfqinrfrkn*ksqry
fvwkgnq*sscng*n*ket*kl*skvflys*prynhiffhgy*sl*cfnylcrrsp**gl
wcfpprlllvpmvfktnkrn*nlnykskikllmikfnqikylni***sllnksfykkkik
kkkk


Frame C:
tn*kln*KMKLLFVLLSLLLIFSVLVQSETAYFGLKTHGDHNDFIFKLTDSEKIKKARDI
LSGKETNEVHVMGRIRKRPESYNPKYSFILDPDTITFFSMAIEVCDASTIYVEDHLDEAC
GAFLPGCFWCPWSSKLTREIKI*tirvklnys*lnliklnt*ifnnkvy*tkvfikkk*k
kkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM239 (SSM239Q) /CSM/SS/SSM2-B/SSM239Q.Seq.d/                        531   e-150
SSK842 (SSK842Q) /CSM/SS/SSK8-B/SSK842Q.Seq.d/                        531   e-150
SSK637 (SSK637Q) /CSM/SS/SSK6-B/SSK637Q.Seq.d/                        531   e-150
SSK558 (SSK558Q) /CSM/SS/SSK5-C/SSK558Q.Seq.d/                        531   e-150
SSJ755 (SSJ755Q) /CSM/SS/SSJ7-C/SSJ755Q.Seq.d/                        531   e-150
SSI859 (SSI859Q) /CSM/SS/SSI8-C/SSI859Q.Seq.d/                        531   e-150
SSI820 (SSI820Q) /CSM/SS/SSI8-A/SSI820Q.Seq.d/                        531   e-150
SSI577 (SSI577Q) /CSM/SS/SSI5-D/SSI577Q.Seq.d/                        531   e-150
SSH825 (SSH825Q) /CSM/SS/SSH8-B/SSH825Q.Seq.d/                        531   e-150
SSH326 (SSH326Q) /CSM/SS/SSH3-B/SSH326Q.Seq.d/                        531   e-150
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF140044|AF140044.1 Dictyostelium discoideum putative calmodulin-binding protein CaM-BP15 mRNA, complete cds.   305  0.0  3
AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence.   109  2e-82  11
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36  0.044  7
AC124735|AC124735.1 Mus musculus chromosome UNK clone RP23-310O18, WORKING DRAFT SEQUENCE, 76 unordered pieces.    40  0.050  3
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.    38  0.096  7
AP006060|AP006060.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0135D07, WORKING DRAFT SEQUENCE, 12 unordered pieces.    48  0.11  1
AP003709|AP003709.2 Oryza sativa genomic DNA, chromosome 1, BAC clone:OSJNBb0006H05.    48  0.11  1
AP002500|AP002500.4 Homo sapiens genomic DNA, chromosome 11q clone:CTD-2240G15, complete sequences.    48  0.11  1
AQ413478|AQ413478.1 RPCI-11-186P24.TV RPCI-11 Homo sapiens genomic clone RPCI-11-186P24, genomic survey sequence.    48  0.11  1
AE014849|AE014849.1 Plasmodium falciparum 3D7 chromosome 12, section 6 of 9 of the complete sequence.    40  0.13  7
dna update 2003. 7.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF140044_1(AF140044|pid:none) Dictyostelium discoideum putative ...   235   6e-61
CP000113_2102(CP000113|pid:none) Myxococcus xanthus DK 1622, com...   141   1e-32
CP000155_1080(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...   130   3e-29
AC115604_1(AC115604|pid:none) Dictyostelium discoideum chromosom...    46   6e-04
CP001618_2965(CP001618|pid:none) Beutenbergia cavernae DSM 12333...    43   0.005
AF080118_11(AF080118|pid:none) Arabidopsis thaliana BAC F8M12.  ...    33   3.7
FN357305_20(FN357305|pid:none) Schistosoma mansoni genome sequen...    33   4.9
CP001184_633(CP001184|pid:none) Ureaplasma urealyticum serovar 1...    33   4.9
protein update 2009. 7. 8
PSORT 

 psg: 0.98  gvh: 0.82  alm: 0.41  top: 0.27  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: extracellular, including cell wall
	 16.0 %: vacuolar
	  8.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: nuclear
	  4.0 %: endoplasmic reticulum

>> prediction for SSI820 is exc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSI820E
Full length Seq. 
>SSI820E.Seq
CAACAAATTAAAAACTCAATTAAAAAATGAAATTATTATTTGTTTTATTATCTCTTCTTT
TAATATTTTCAGTATTGGTACAATCTGAAACAGCCTATTTTGGTTTAAAAACCCATGGTG
ACCATAATGATTTTATTTTCAAATTAACAGATTCAGAAAAAATTAAAAAAGCCAGAGATA
TTTTGTCTGGAAAGGAAACCAATGAAGTTCATGTAATGGGTAGAATTAGAAAGAGACCTG
AAAGCTATAATCCAAAGTATTCCTTTATTCTTGACCCAGATACAATCACATTTTTTTCCA
TGGCTATTGAAGTTTGTGATGCTTCAACTATTTATGTAGAAGATCACCTTGATGAGGCCT
GTGGTGCTTTCCTCCCAGGTTGCTTCTGGTGCCCATGGTCTTCAAAACTAACAAGAGAAA
TTAAAATTTAAACTATAAGAGTAAAATTAAATTACTCATGATTAAATTTAATCAAATTAA
ATACTTAAATATTTAATAATAAAGTTTATTAAACAAAAGTTTTTATAAAAAAAAAATAAA
AAAAAAAAAAAAA
Length of full length seq. 553