SSI819
Library SS
(Link to library)
Clone ID SSI819
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16448-1
Original site URL
Representative seq. ID SSI819Z
(Link to Original site)
Representative DNA sequence
>SSI819 (SSI819Q) /CSM/SS/SSI8-A/SSI819Q.Seq.d/
XXXXXXXXXXAAATATGAAATCACATCTTTTCTTCTCTTTAAATCCAGATTCTGCTGATA
CTGATTCAATTTTATATGAAGATTGGAAAACTGTTAATCAAAAAACAATGAATTATTTAA
GAAAAATTAATTCTTCACCTTCAAAATTCACTCCAAATGGTAATCAAATTTGTCTTGGTC
AAGTTTCAACAATTTCAACAATTGGTAGTTCAACTACAACTGCTTCACAATCAACAACAA
CAACAACAACTGGAACAGGTTCAACAACTAGTAAACCAACAACCACTGGTGGATCAGGTT
CATCAACAACTACAACTAAACCATCAACAACAACAACAACAACAACAACAACCACTGGTG
GATCAAGTACAACTGGATCATCAAATGTTAAAGCAGTTATTAAACAAACTATTAGACAAA
CTTGGTTTGATGGTACAAATCCAAATACTTTGGTTGATTGTACATTAACCAATCCATCAA
GTAGTCCAATTCCTATTCCAAGATTTGCAATTGATAAAACTCCATCATCATCTTGGGAAT
TGAATTTAGTTAGTTCAAATATTGTTTCATTTACAAGTTGGAATAACCAAATTAGTCCTG
GTCAAACTTTATCATTTGGTTATATTGTTTCTAGTAGTACTGTAATNNCATTTACTCAAA
TTTAAAAAAAAAAAAA
sequence update 1998. 1.16
Translated Amino Acid sequence
---NMKSHLFFSLNPDSADTDSILYEDWKTVNQKTMNYLRKINSSPSKFTPNGNQICLGQ
VSTISTIGSSTTTASQSTTTTTTGTGSTTSKPTTTGGSGSSTTTTKPSTTTTTTTTTTGG
SSTTGSSNVKAVIKQTIRQTWFDGTNPNTLVDCTLTNPSSSPIPIPRFAIDKTPSSSWEL
NLVSSNIVSFTSWNNQISPGQTLSFGYIVSSSTVXXFTQI*kkk


Translated Amino Acid sequence (All Frames)
Frame A:
---NMKSHLFFSLNPDSADTDSILYEDWKTVNQKTMNYLRKINSSPSKFTPNGNQICLGQ
VSTISTIGSSTTTASQSTTTTTTGTGSTTSKPTTTGGSGSSTTTTKPSTTTTTTTTTTGG
SSTTGSSNVKAVIKQTIRQTWFDGTNPNTLVDCTLTNPSSSPIPIPRFAIDKTPSSSWEL
NLVSSNIVSFTSWNNQISPGQTLSFGYIVSSSTVXXFTQI*kkk


Frame B:
---i*nhifssl*iqilliliqfymkigkllikkq*ii*eklilhlqnslqmvikfvlvk
fqqfqqlvvqlqllhnqqqqqqleqvqqlvnqqplvdqvhqqlqlnhqqqqqqqqqplvd
qvqldhqmlkqllnklldklglmvqiqilwlivh*pihqvvqflfqdlqliklhhhlgn*
i*lvqilfhlqvgitklvlvklyhlvilflvvl*xhllkfkkkk


Frame C:
---yeitsfllfksrfc*y*fnfi*rlenc*sknnelfkkn*fftfkihskw*snlswss
fnnfnnw*fnyncftinnnnnnwnrfnn**tnnhwwirfinnyn*tinnnnnnnnnhwwi
kynwiikc*ssy*tny*tnlv*wykskyfg*lyinqsik*snsyskicn**nsiiilgie
fs*fkycfiykle*pn*swsnfiiwlycf**ycnxiysnlkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSI819 (SSI819Q) /CSM/SS/SSI8-A/SSI819Q.Seq.d/ 605 e-172
SSM763 (SSM763Q) /CSM/SS/SSM7-C/SSM763Q.Seq.d/ 597 e-170
SSK593 (SSK593Q) /CSM/SS/SSK5-D/SSK593Q.Seq.d/ 597 e-170
SSI526 (SSI526Q) /CSM/SS/SSI5-B/SSI526Q.Seq.d/ 597 e-170
SSI228 (SSI228Q) /CSM/SS/SSI2-B/SSI228Q.Seq.d/ 597 e-170
SSI120 (SSI120Q) /CSM/SS/SSI1-A/SSI120Q.Seq.d/ 597 e-170
SSH762 (SSH762Q) /CSM/SS/SSH7-C/SSH762Q.Seq.d/ 597 e-170
SSG285 (SSG285Q) /CSM/SS/SSG2-D/SSG285Q.Seq.d/ 597 e-170
SSG235 (SSG235Q) /CSM/SS/SSG2-B/SSG235Q.Seq.d/ 597 e-170
SSG191 (SSG191Q) /CSM/SS/SSG1-D/SSG191Q.Seq.d/ 597 e-170

own update 2001.11.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC090051|AC090051.8 Homo sapiens 12q BAC RP11-467E3 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 54 0.022 3
M18162|M18162.1 Pea PSL3 lectin pseudogene. 44 0.040 2
BU367499|BU367499.1 603784480F1 CSEQCHN72 Gallus gallus cDNA clone ChEST738o19 5', mRNA sequence. 48 0.14 1
AC143356|AC143356.1 Pan troglodytes chromosome 7 clone RP43-64A13, complete sequence. 38 0.34 4
AC132086|AC132086.2 Mus musculus chromosome UNK clone RP24-556M16, WORKING DRAFT SEQUENCE, 2 unordered pieces. 38 0.50 4
AF102955|AF102955.1 Pelvetia canaliculata country Isle of Man 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence. 46 0.56 1
AF102953|AF102953.1 Pelvetia canaliculata country Norway 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence. 46 0.56 1
AF102954|AF102954.1 Pelvetia canaliculata country Portugal 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence. 46 0.56 1
U39645|U39645.1 Caenorhabditis elegans cosmid C14F11. 40 1.5 2
AC007704|AC007704.1 Homo sapiens chromosome 4, WORKING DRAFT SEQUENCE, 40 unordered pieces. 38 1.6 2
dna update 2003. 7.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116977_84(AC116977|pid:none) Dictyostelium discoideum chromoso... 45 0.001
(P14768) RecName: Full=Endo-1,4-beta-xylanase A; Short=... 41 0.028
CP000511_3449(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1... 41 0.036
(P22698) RecName: Full=Spore germination protein 270-11; &B3562... 41 0.036
CP000656_2982(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c... 41 0.036
CP000568_2108(CP000568|pid:none) Clostridium thermocellum ATCC 2... 39 0.11
AJ275975_1(AJ275975|pid:none) Clostridium thermocellum celO gene... 39 0.11
BA000001_1206(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, ... 39 0.14
CP000282_2268(CP000282|pid:none) Saccharophagus degradans 2-40, ... 38 0.24
CP000934_2552(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 38 0.31
protein update 2009. 6.13
PSORT

psg: 0.82 gvh: 0.48 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
24.0 %: nuclear
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SSI819 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI819Z
3' end seq.
>SSI819Z.Seq
----------AAATATGAAATCACATCTTTTCTTCTCTTTAAATCCAGATTCTGCTGATA
CTGATTCAATTTTATATGAAGATTGGAAAACTGTTAATCAAAAAACAATGAATTATTTAA
GAAAAATTAATTCTTCACCTTCAAAATTCACTCCAAATGGTAATCAAATTTGTCTTGGTC
AAGTTTCAACAATTTCAACAATTGGTAGTTCAACTACAACTGCTTCACAATCAACAACAA
CAACAACAACTGGAACAGGTTCAACAACTAGTAAACCAACAACCACTGGTGGATCAGGTT
CATCAACAACTACAACTAAACCATCAACAACAACAACAACAACAACAACAACCACTGGTG
GATCAAGTACAACTGGATCATCAAATGTTAAAGCAGTTATTAAACAAACTATTAGACAAA
CTTGGTTTGATGGTACAAATCCAAATACTTTGGTTGATTGTACATTAACCAATCCATCAA
GTAGTCCAATTCCTATTCCAAGATTTGCAATTGATAAAACTCCATCATCATCTTGGGAAT
TGAATTTAGTTAGTTCAAATATTGTTTCATTTACAAGTTGGAATAACCAAATTAGTCCTG
GTCAAACTTTATCATTTGGTTATATTGTTTCTAGTAGTACTGTAATNNCATTTACTCAAA
TTTAAAAAAAAAAAAA
Length of 3' end seq. 666
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -