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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI818
Library SS
(Link to library)
Clone ID SSI818
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10253-1
Original site URL
Representative seq. ID SSI818Z
(Link to Original site)
Representative DNA sequence 
>SSI818 (SSI818Q) /CSM/SS/SSI8-A/SSI818Q.Seq.d/
XXXXXXXXXXTATAATATATAAATAAAATGTCATCAGAAGACGGTATTAAGAAATTATTA
GATGCTGAAAGAACTGCACAAAAAATCGTTGCAGATGCCAGACAAGATAGAGTTCAAAAA
TTAAAGAAAGCAGTCGAAGAAGCTGAAAAAGAAATCAAAGAATTTAGAGAGAAAAAAGAT
AAAGAATACAAAGAATATGAATCAAAATATTTAGGTGCTTCATCTGAAACTGCTTCACAA
TTAGCCACCANNGCTAACAAAGAAATTGATACCATCAGAAACGAAACTGCTGCCAACAAA
CAAAAAGTTGTTGATCTCCTCATCAAATACGCAATCACCTGTGACAATTAAAATATTTAG
TGTTTAAACATAAATAAAATAAAAGTAAAATAAAAAAGTAAAATAAATAAAAAAAATAAA
AAAAATATAAAATTT
sequence update 1998. 1.16
Translated Amino Acid sequence 
---*YINKMSSEDGIKKLLDAERTAQKIVADARQDRVQKLKKAVEEAEKEIKEFREKKDK
EYKEYESKYLGASSETASQLATXANKEIDTIRNETAANKQKVVDLLIKYAITCDN*ni*c
lninkikvk*kskinkknkknikf
Translated Amino Acid sequence (All Frames) 
Frame A:
---iiyk*nvirrry*eiirc*knctknrcrcqtr*sskikessrrs*krnqri*rekr*
riqri*ikifrcfi*ncftishxx*qrn*yhqkrnccqqtksc*sphqirnhl*qlkylv
fkhk*nkskikk*nk*kk*kkyki


Frame B:
---*YINKMSSEDGIKKLLDAERTAQKIVADARQDRVQKLKKAVEEAEKEIKEFREKKDK
EYKEYESKYLGASSETASQLATXANKEIDTIRNETAANKQKVVDLLIKYAITCDN*ni*c
lninkikvk*kskinkknkknikf


Frame C:
---ni*ikchqktvlrny*mlkelhkkslqmpdkiefkn*rkqskklkkksknlerkkik
ntknmnqni*vlhlkllhn*ppxltkklipsetkllptnkkllisssntqspvtikifsv
*t*ik*k*nkkvk*ikkikki*n
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI330 (VSI330Q) /CSM/VS/VSI3-B/VSI330Q.Seq.d/                        353   1e-96
VSH355 (VSH355Q) /CSM/VS/VSH3-C/VSH355Q.Seq.d/                        353   1e-96
VSF751 (VSF751Q) /CSM/VS/VSF7-C/VSF751Q.Seq.d/                        353   1e-96
VSE511 (VSE511Q) /CSM/VS/VSE5-A/VSE511Q.Seq.d/                        353   1e-96
VFI525 (VFI525Q) /CSM/VF/VFI5-B/VFI525Q.Seq.d/                        353   1e-96
VFE582 (VFE582Q) /CSM/VF/VFE5-D/VFE582Q.Seq.d/                        353   1e-96
SSL140 (SSL140Q) /CSM/SS/SSL1-B/SSL140Q.Seq.d/                        353   1e-96
SSJ202 (SSJ202Q) /CSM/SS/SSJ2-A/SSJ202Q.Seq.d/                        353   1e-96
SSI818 (SSI818Q) /CSM/SS/SSI8-A/SSI818Q.Seq.d/                        353   1e-96
SSI155 (SSI155Q) /CSM/SS/SSI1-C/SSI155Q.Seq.d/                        353   1e-96
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AZ547896|AZ547896.1 ENTEO94TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42  0.020  2
BZ159661|BZ159661.1 CH230-433M22.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-433M22, DNA sequence.    36  0.046  2
AC092328|AC092328.2 Homo sapiens chromosome 5 clone RP11-15D23, WORKING DRAFT SEQUENCE, 2 unordered pieces.    48  0.089  1
AC025445|AC025445.5 Homo sapiens chromosome 5 clone CTD-2049O17, complete sequence.    48  0.089  1
BH933386|BH933386.1 odg71a08.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    44  1.4  1
AZ095143|AZ095143.1 RPCI-23-448F6.TJ RPCI-23 Mus musculus genomic clone RPCI-23-448F6, genomic survey sequence.    44  1.4  1
BH706916|BH706916.1 BOMBJ51TR BO_2_3_KB Brassica oleracea genomic clone BOMBJ51, DNA sequence.    44  1.4  1
BX120016|BX120016.11 Zebrafish DNA sequence from clone CH211-232H16 in linkage group 2.    44  1.4  1
AF081802|AF081802.1 Dictyostelium discoideum developmental protein DG1118 (DG1118) gene, complete cds.    34  1.5  2
AC021844|AC021844.4 Homo sapiens chromosome 5 clone RP11-15D23, WORKING DRAFT SEQUENCE, 4 unordered pieces.    48  2.1  2
dna update 2003. 7.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF677429_1(EF677429|pid:none) Picea sitchensis clone WS02768_L02...    34   1.4
EF197846_3(EF197846|pid:none) Arabidopsis halleri miR319a microR...    34   1.8
AJ005902_1(AJ005902|pid:none) Arabidopsis thaliana mRNA for V-AT...    33   2.3
(O82629) RecName: Full=V-type proton ATPase subunit G 2;        ...    33   2.3
CP001325_86(CP001325|pid:none) Micromonas sp. RCC299 chromosome ...    33   2.3
AY834222_1(AY834222|pid:none) Trichophyton rubrum vacuolar ATPas...    32   6.7
protein update 2009. 6.13
PSORT 

 psg: 0.75  gvh: 0.31  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SSI818 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI818Z
3' end seq. 
>SSI818Z.Seq
----------TATAATATATAAATAAAATGTCATCAGAAGACGGTATTAAGAAATTATTA
GATGCTGAAAGAACTGCACAAAAAATCGTTGCAGATGCCAGACAAGATAGAGTTCAAAAA
TTAAAGAAAGCAGTCGAAGAAGCTGAAAAAGAAATCAAAGAATTTAGAGAGAAAAAAGAT
AAAGAATACAAAGAATATGAATCAAAATATTTAGGTGCTTCATCTGAAACTGCTTCACAA
TTAGCCACCANNGCTAACAAAGAAATTGATACCATCAGAAACGAAACTGCTGCCAACAAA
CAAAAAGTTGTTGATCTCCTCATCAAATACGCAATCACCTGTGACAATTAAAATATTTAG
TGTTTAAACATAAATAAAATAAAAGTAAAATAAAAAAGTAAAATAAATAAAAAAAATAAA
AAAAATATAAAATTT
Length of 3' end seq. 425
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -