SSI814
Library SS
(Link to library)
Clone ID SSI814
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U05489-1
Original site URL
Representative seq. ID SSI814E
(Link to Original site)
Representative DNA sequence
>SSI814 (SSI814Q) /CSM/SS/SSI8-A/SSI814Q.Seq.d/
CACATAAATAAATAAATAGATAAATATATATTTAAATAATAAATAATTAATAAAATGTCA
GGTACAAAATTTAGAACTGGTGGTACAAAAGAGGATGATTTATTAGAATTTGTTAAAGTT
GGTAAATTATTAGAAGTTAAAGATTTAATCGAGAATCAAGGTGTTAAAGCAGATTGTAAG
GATGAAGATGAAAGAACACCATTACATTGGGCAGCTGCAAAAGGTCAAATATCAGTAGCT
CAATATTTAATGGATAATTGTAAATGTTCACCAAATACAAATGATGATGGTGGTTGGACA
TTACCAGTGCTACCTCTGCTGGTCATACTCATATGGTTAAATTATTATTAGAATTTGGTG
CTGATCCAAACACTGTAAATGATTCAAAAAGAACTCCATTACATTATGCATCATCAAAAG
GTAGATCAGATATTGTTGATTTATTATTAACACATGGAGCAAAGAATAGAAAAGATGATA
CAGGATCAGCACCNANTCATAGAGCTTCATCAAATGGTTCAGTTGCAACAGTTGAAAGAT
TATTAAAAGGTGAAGCAANTATAAANTCNACAAATAATGAAGGTGATACACCATTACATA
TTGCTGCTGAATACAATCATGAGGATGTTGTTGAATGTTTATTGAAACATGGTGCTNNTA
CAACAATTGCAATTGAAAATAAAGATAGTAAAACTCCAATTGATATGTCATCTTCTCAAA
CTATTAAATATTTAATTAAAGAATTTAAAAAATAATTTTATTGATAAATAATAATAAATA
ATAATCAAAAAAATATATAATAATAATAATAGTAATAATAATAATATATTTTATAACAAT
GTACATAATAAAATAATAGGT
sequence update 1999. 4.21
Translated Amino Acid sequence
hk*inr*iyi*iinn**nvryki*nwwykrg*firic*sw*iirs*rfnresrc*srl*g
*r*kntitlgsckrsnisssifng*l*mftkyk**WWLDITSATSAGHTHMVKLLLEFGA
DPNTVNDSKRTPLHYASSKGRSDIVDLLLTHGAKNRKDDTGSAPXHRASSNGSVATVERL
LKGEAXIXSTNNEGDTPLHIAAEYNHEDVVECLLKHGAXTTIAIENKDSKTPIDMSSSQT
IKYLIKEFKK*fy**iiinnnqkni*********yil*qct**nnr


Translated Amino Acid sequence (All Frames)
Frame A:
hink*idkyifk**iinkmsgtkfrtggtkeddllefvkvgkllevkdlienqgvkadck
dedertplhwaaakgqisvaqylmdnckcspntnddggwtlpvlpllviliwlnyy*nlv
liqtl*miqkelhyimhhqkvdqilliyy*hmeqriekmiqdqhxxielhqmvqlqqlkd
y*kvkqx*xxqimkvihhyilllntimrmllnvy*nmvlxqqlqlkikivklqlichllk
llni*lknlknnfidk***iiikkiynnnnsnnnnifynnvhnkiig


Frame B:
t*ink*iniylnnk*likcqvqnlelvvqkrmiy*nllklvny*klki*srikvlkqivr
mkmkehhyigqlqkvkyq*lni*wiivnvhqiqmmmvvghyqcylcwsysyg*iiiriwc
*skhck*fkknsitlciikr*iryc*fiintwske*kr*yristxs*sfikwfscns*ki
ikr*sxykxxk**r*ytitycc*iqs*gcc*mfietwcxynncn*k*r**nsn*yvifsn
y*ifn*ri*kiillinnnk**skkyiiiiiviiiiyfitmyiik**


Frame C:
hk*inr*iyi*iinn**nvryki*nwwykrg*firic*sw*iirs*rfnresrc*srl*g
*r*kntitlgsckrsnisssifng*l*mftkyk**WWLDITSATSAGHTHMVKLLLEFGA
DPNTVNDSKRTPLHYASSKGRSDIVDLLLTHGAKNRKDDTGSAPXHRASSNGSVATVERL
LKGEAXIXSTNNEGDTPLHIAAEYNHEDVVECLLKHGAXTTIAIENKDSKTPIDMSSSQT
IKYLIKEFKK*fy**iiinnnqkni*********yil*qct**nnr


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSI814 (SSI814Q) /CSM/SS/SSI8-A/SSI814Q.Seq.d/ 1306 0.0
VFG830 (VFG830Q) /CSM/VF/VFG8-B/VFG830Q.Seq.d/ 42 0.014
VSH316 (VSH316Q) /CSM/VS/VSH3-A/VSH316Q.Seq.d/ 40 0.055
VFN309 (VFN309Q) /CSM/VF/VFN3-A/VFN309Q.Seq.d/ 40 0.055
VFK719 (VFK719Q) /CSM/VF/VFK7-A/VFK719Q.Seq.d/ 40 0.055
SSD119 (SSD119Q) /CSM/SS/SSD1-A/SSD119Q.Seq.d/ 40 0.055
SLE629 (SLE629Q) /CSM/SL/SLE6-B/SLE629Q.Seq.d/ 40 0.055
SFK344 (SFK344Q) /CSM/SF/SFK3-B/SFK344Q.Seq.d/ 40 0.055
SFH767 (SFH767Q) /CSM/SF/SFH7-C/SFH767Q.Seq.d/ 40 0.055
CHD602 (CHD602Q) /CSM/CH/CHD6-A/CHD602Q.Seq.d/ 40 0.055

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 34 0.082 10
L42537|L42537.1 Clostridium botulinum ha70, ha17, ha34, orfX, ntnhA genes, complete cds. 44 0.15 3
AE010484|AE010484.1 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 26 of 197 of the complete genome. 36 0.27 3
X92973|X92973.1 C.botulinum A ntnh and bont genes. 44 0.30 2
D67030|D67030.1 Clostridium botulinum genes for ORF22-a and type A progenitor toxin nontoxic-nonHA, complete cds, and type A neurotoxin, partial cds. 44 0.36 2
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence. 34 0.40 5
AL034347|AL034347.23 Human DNA sequence from clone RP4-676J13 on chromosome 6q14. Contains the 3' end of the gene for flavohemoprotein b5+b5R cytochrome b-type NAD(P)H oxidoreductase, ESTs, STSs and GSSs. 34 0.41 4
AF461540|AF461540.1 Clostridium botulinum strain Hall A-hyper putative flagellin gene, partial cds; HA-70 (ha70), HA-17 (ha17), HA-33 (ha33), BotR (botR), NTNH (ntnh), and BoNT/A (bont/a) genes, complete cds; and orf-1 and orfAB genes, complete sequence. 44 0.44 3
Y14239|Y14239.1 Clostridium botulinum P-21 and ntnh genes and partial HA-33 and boNT/B genes. 44 0.49 2
X87849|X87849.1 C.botulinum NTNH gene & BoNT/B gene, clone pCBC1-28. 44 0.51 2
dna update 2003. 9. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC087343_1(BC087343|pid:none) Xenopus laevis hypothetical LOC495... 107 2e-29
BC141731_1(BC141731|pid:none) Xenopus laevis hypothetical protei... 107 2e-29
BC135477_1(BC135477|pid:none) Xenopus tropicalis proteasome (pro... 107 3e-29
BC094958_1(BC094958|pid:none) Danio rerio proteasome (prosome, m... 103 4e-28
BT074723_1(BT074723|pid:none) Osmerus mordax clone omor-rgc-513-... 100 1e-26
BT047998_1(BT047998|pid:none) Salmo salar clone ssal-rgb2-509-13... 100 7e-26
AY888506_1(AY888506|pid:none) Synthetic construct Homo sapiens c... 95 7e-25
DQ000544_1(DQ000544|pid:none) Synthetic construct clone PSF:1084... 94 9e-25
(O75832) RecName: Full=26S proteasome non-ATPase regulatory subu... 94 9e-25
AB170098_1(AB170098|pid:none) Macaca fascicularis brain cDNA clo... 94 9e-25
protein update 2009. 7. 8
PSORT

psg: 0.75 gvh: 0.42 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: vacuolar
8.0 %: mitochondrial
4.0 %: endoplasmic reticulum
4.0 %: peroxisomal

>> prediction for SSI814 is nuc

5' end seq. ID SSI814F
5' end seq.
>SSI814F.Seq
CACATAAATAAATAAATAGATAAATATATATTTAAATAATAAATAATTAATAAAATGTCA
GGTACAAAATTTAGAACTGGTGGTACAAAAGAGGATGATTTATTAGAATTTGTTAAAGTT
GGTAAATTATTAGAAGTTAAAGATTTAATCGAGAATCAAGGTGTTAAAGCAGATTGTAAG
GATGAAGATGAAAGAACACCATTACATTGGGCAGCTGCAAAAGGTCAAATATCAGTAGCT
CAATATTTAATGGATAATTGTAAATGTTCACCAAATACAAATGATGATGGTGGTTGGACA
CCTCTTACCAGTGCTACCTCTGCTGGTCATACTCATATGGTTAAATTATTATTAGAATTT
GGTGCTGATCCAAACACTGTAAATGATTCAAAAAGAACTCCATTACATTATGCATCATCA
AAAGGTAGATCAGATATTGTTGATTTATTATTAACACATGGAGCAAAGAATAGAAAAGAT
GATACAGGATCAGCACCAATTCATAGAGCTTCATCAAATGGTTCAGTTGCAACAGTTGAA
AGATTATTAAAAGGTGAAGCAAATATAAATTCAACAAATAATGAAGGTGATACACCATTA
CATATTGCTGCTGAATACAATCATGAGGATGTTGTTGATGTTTATTGAAACATGGTGCTG
ATACAACAATTG----------
Length of 5' end seq. 672
3' end seq. ID SSI814Z
3' end seq.
>SSI814Z.Seq
----------TTACCAGTGCTACCTCTGCTGGTCATACTCATATGGTTAAATTATTATTA
GAATTTGGTGCTGATCCAAACACTGTAAATGATTCAAAAAGAACTCCATTACATTATGCA
TCATCAAAAGGTAGATCAGATATTGTTGATTTATTATTAACACATGGAGCAAAGAATAGA
AAAGATGATACAGGATCAGCACCGAGTCATAGAGCTTCATCAAATGGTTCAGTTGCAACA
GTTGAAAGATTATTAAAAGGTGAAGCAAGTATAAAGTCGACAAATAATGAAGGTGATACA
CCATTACATATTGCTGCTGAATACAATCATGAGGATGTTGTTGAATGTTTATTGAAACAT
NNNNCNAGTACAACAATTGAAAATAAAGATAGTAAAACTCCAATTGATATGTCATCTTCT
CAAACTATTAAATATTTAATTAAAGAATTTAAAAAATAATTTTATTGATAAATAATAATA
AATAATAATCAAAAAAATATATAATAATAATAATAGTAATAATAATAATATATTTTATAA
CAATGTACATAATAAAATAATAGGTTTTTTTTTA
Length of 3' end seq. 564
Connected seq. ID SSI814P
Connected seq.
>SSI814P.Seq
CACATAAATAAATAAATAGATAAATATATATTTAAATAATAAATAATTAATAAAATGTCA
GGTACAAAATTTAGAACTGGTGGTACAAAAGAGGATGATTTATTAGAATTTGTTAAAGTT
GGTAAATTATTAGAAGTTAAAGATTTAATCGAGAATCAAGGTGTTAAAGCAGATTGTAAG
GATGAAGATGAAAGAACACCATTACATTGGGCAGCTGCAAAAGGTCAAATATCAGTAGCT
CAATATTTAATGGATAATTGTAAATGTTCACCAAATACAAATGATGATGGTGGTTGGACA
CCTCTTACCAGTGCTACCTCTGCTGGTCATACTCATATGGTTAAATTATTATTAGAATTT
GGTGCTGATCCAAACACTGTAAATGATTCAAAAAGAACTCCATTACATTATGCATCATCA
AAAGGTAGATCAGATATTGTTGATTTATTATTAACACATGGAGCAAAGAATAGAAAAGAT
GATACAGGATCAGCACCAATTCATAGAGCTTCATCAAATGGTTCAGTTGCAACAGTTGAA
AGATTATTAAAAGGTGAAGCAAATATAAATTCAACAAATAATGAAGGTGATACACCATTA
CATATTGCTGCTGAATACAATCATGAGGATGTTGTTGATGTTTATTGAAACATGGTGCTG
ATACAACAATTG----------TTACCAGTGCTACCTCTGCTGGTCATACTCATATGGTT
AAATTATTATTAGAATTTGGTGCTGATCCAAACACTGTAAATGATTCAAAAAGAACTCCA
TTACATTATGCATCATCAAAAGGTAGATCAGATATTGTTGATTTATTATTAACACATGGA
GCAAAGAATAGAAAAGATGATACAGGATCAGCACCGAGTCATAGAGCTTCATCAAATGGT
TCAGTTGCAACAGTTGAAAGATTATTAAAAGGTGAAGCAAGTATAAAGTCGACAAATAAT
GAAGGTGATACACCATTACATATTGCTGCTGAATACAATCATGAGGATGTTGTTGAATGT
TTATTGAAACATNNNNCNAGTACAACAATTGAAAATAAAGATAGTAAAACTCCAATTGAT
ATGTCATCTTCTCAAACTATTAAATATTTAATTAAAGAATTTAAAAAATAATTTTATTGA
TAAATAATAATAAATAATAATCAAAAAAATATATAATAATAATAATAGTAATAATAATAA
TATATTTTATAACAATGTACATAATAAAATAATAGGTTTTTTTTTA
Length of connected seq. 1236
Full length Seq ID SSI814E
Full length Seq.
>SSI814E.Seq
CACATAAATAAATAAATAGATAAATATATATTTAAATAATAAATAATTAATAAAATGTCA
GGTACAAAATTTAGAACTGGTGGTACAAAAGAGGATGATTTATTAGAATTTGTTAAAGTT
GGTAAATTATTAGAAGTTAAAGATTTAATCGAGAATCAAGGTGTTAAAGCAGATTGTAAG
GATGAAGATGAAAGAACACCATTACATTGGGCAGCTGCAAAAGGTCAAATATCAGTAGCT
CAATATTTAATGGATAATTGTAAATGTTCACCAAATACAAATGATGATGGTGGTTGGACA
TTACCAGTGCTACCTCTGCTGGTCATACTCATATGGTTAAATTATTATTAGAATTTGGTG
CTGATCCAAACACTGTAAATGATTCAAAAAGAACTCCATTACATTATGCATCATCAAAAG
GTAGATCAGATATTGTTGATTTATTATTAACACATGGAGCAAAGAATAGAAAAGATGATA
CAGGATCAGCACCNANTCATAGAGCTTCATCAAATGGTTCAGTTGCAACAGTTGAAAGAT
TATTAAAAGGTGAAGCAANTATAAANTCNACAAATAATGAAGGTGATACACCATTACATA
TTGCTGCTGAATACAATCATGAGGATGTTGTTGAATGTTTATTGAAACATGGTGCTNNTA
CAACAATTGCAATTGAAAATAAAGATAGTAAAACTCCAATTGATATGTCATCTTCTCAAA
CTATTAAATATTTAATTAAAGAATTTAAAAAATAATTTTATTGATAAATAATAATAAATA
ATAATCAAAAAAATATATAATAATAATAATAGTAATAATAATAATATATTTTATAACAAT
GTACATAATAAAATAATAGGT
Length of full length seq. 861