>SSI788 (SSI788Q) /CSM/SS/SSI7-D/SSI788Q.Seq.d/
XXXXXXXXXXAGAATTCAATTACAACACCAGCAATTACAGGTTTATATCCAAGAGAAGGT
GGGGAATTTGTAGCACCATCAGCATCAATTATTGGTAATGTTAATTTAGGTGTAGGATCA
TCAGTTTGGGATAACTGTGTTATTAGAGCAGACGTTAATTACATTCATATTGGTGCATTT
ACAAATGTTCAAGATGGTACAATCATTAGAGAAGCCAATGAGCCAATATCATTGGACCAC
AATGGCAGCACAATCATTGGTGATCAAGTAACAATTGGTCACAGTTGTATACTTGAAGCA
TGTACTGTCGAAGAGAATTGTTTGATTGGAATGGGTTCAATTTTGGAACCAGAATCATAC
GTTGAAGCAAACTCAATTTTAGGTTCAAATTCAATCTTAACCAAAGGTTCTCGTATTAAA
TCTGGTGAACTTTGGGTTGGTAAACCAGCTAAATTTGTTAGAAATTTAACTGAAAATGAA
AAAATCGATATTAGTAATAGTGCTCATTCCTATATGTTAAATGCTGAAAAAGCATTTGAA
TCTTTTGGTTTAGATAAAGATTCTTTCATCTATATTGATGCTCAACAACAAGGCATTCAA
GTTGGTTGGAAAGGTAGTTATTTTTCTGAATAAAATAAAATAAATTAAAAATAAATTAAA
TTAAATAAATAATAATAAAAATAAAAATAAATTTATACCGAAAAAGTTGTAATCAAAAAC
A

---NSITTPAITGLYPREGGEFVAPSASIIGNVNLGVGSSVWDNCVIRADVNYIHIGAFT
NVQDGTIIREANEPISLDHNGSTIIGDQVTIGHSCILEACTVEENCLIGMGSILEPESYV
EANSILGSNSILTKGSRIKSGELWVGKPAKFVRNLTENEKIDISNSAHSYMLNAEKAFES
FGLDKDSFIYIDAQQQGIQVGWKGSYFSE*nkin*k*iklnk***k*k*iytekvvikn

Frame A:
---efnyntsnyrfiskrrwgicstisinyw*c*frcriislg*lcy*srr*lhsywciy
kcsrwynh*rsq*aniigpqwqhnhw*ssnnwsqlyt*smycrrelfdwngfnfgtriir
*sklnfrfkfnlnqrfsy*iw*tlgw*ts*ic*kfn*k*knry***csflyvkc*ksi*i
fwfr*rffhly*csttrhsswler*lff*ik*nklkin*ik*iiikikinlyrkscnqk


Frame B:
---NSITTPAITGLYPREGGEFVAPSASIIGNVNLGVGSSVWDNCVIRADVNYIHIGAFT
NVQDGTIIREANEPISLDHNGSTIIGDQVTIGHSCILEACTVEENCLIGMGSILEPESYV
EANSILGSNSILTKGSRIKSGELWVGKPAKFVRNLTENEKIDISNSAHSYMLNAEKAFES
FGLDKDSFIYIDAQQQGIQVGWKGSYFSE*nkin*k*iklnk***k*k*iytekvvikn


Frame C:
---iqlqhqqlqvyiqekvgnl*hhqhqllvmli*v*dhqfgitvlleqtlitfilvhlq
mfkmvqslekpmsqyhwttmaaqslvik*qlvtvvylkhvlskriv*lewvqfwnqnhtl
kqtqf*vqiqs*pkvlvlnlvnfglvnqlnllei*lkmkksilvivlipic*mlkkhlnl
lv*ikilssilmlnnkafklvgkvviflnkik*iknkln*innnknknkfipkkl*skt

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI788 (SSI788Q) /CSM/SS/SSI7-D/SSI788Q.Seq.d/                       1225   0.0
VSJ586 (VSJ586Q) /CSM/VS/VSJ5-D/VSJ586Q.Seq.d/                       1211   0.0
SSI719 (SSI719Q) /CSM/SS/SSI7-A/SSI719Q.Seq.d/                       1156   0.0
VSH367 (VSH367Q) /CSM/VS/VSH3-C/VSH367Q.Seq.d/                       1128   0.0
VSC316 (VSC316Q) /CSM/VS/VSC3-A/VSC316Q.Seq.d/                       1124   0.0
SSI158 (SSI158Q) /CSM/SS/SSI1-C/SSI158Q.Seq.d/                       1025   0.0
VSD825 (VSD825Q) /CSM/VS/VSD8-B/VSD825Q.Seq.d/                        607   e-172
SSD483 (SSD483Q) /CSM/SS/SSD4-D/SSD483Q.Seq.d/                         40   0.046
CFI103 (CFI103Q) /CSM/CF/CFI1-A/CFI103Q.Seq.d/                         38   0.18
AFO643 (AFO643Q) /CSM/AF/AFO6-B/AFO643Q.Seq.d/                         38   0.18

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL844873|AL844873.4 Mouse DNA sequence from clone RP23-26H8 on chromosome 2.    50  0.038  1
AZ394819|AZ394819.1 1M0158J04R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0158J04 R, DNA sequence.    50  0.038  1
AC138638|AC138638.2 Mus musculus chromosome 8 clone RP23-380M21 map 8, LOW-PASS SEQUENCE SAMPLING.    48  0.15  1
AC118408|AC118408.6 Rattus norvegicus clone CH230-213D23, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    48  0.15  1
AC102210|AC102210.3 Mus musculus clone RP24-351F4, WORKING DRAFT SEQUENCE, 4 unordered pieces.    48  0.15  1
AC006871|AC006871.1 Caenorhabditis elegans clone Y53G8X, WORKING DRAFT SEQUENCE, 3 unordered pieces.    38  0.20  4
AC006803|AC006803.2 Caenorhabditis elegans clone Y53G8A, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    38  0.20  4
AE001182|AE001182.1 Borrelia burgdorferi (section 68 of 70) of the complete genome.    32  0.26  4
AC027494|AC027494.2 Homo sapiens chromosome 5 clone RP11-605B1 map 5, WORKING DRAFT SEQUENCE, 15 unordered pieces.    38  0.33  5
AC036227|AC036227.2 Homo sapiens chromosome 11 clone RP11-593K21 map 11, WORKING DRAFT SEQUENCE, 21 unordered pieces.    44  0.39  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ876807_1(AJ876807|pid:none) Acanthamoeba polyphaga partial mRN...   194   2e-48
AK103904_1(AK103904|pid:none) Oryza sativa Japonica Group cDNA c...   148   1e-34
AF249876_1(AF249876|pid:none) Arabidopsis thaliana transcription...   147   2e-34
AC079677_2(AC079677|pid:none) Arabidopsis thaliana chromosome 1 ...   147   3e-34
AM999887_1236(AM999887|pid:none) Wolbachia endosymbiont of Culex...   145   2e-33
AC024609_8(AC024609|pid:none) Arabidopsis thaliana chromosome I ...   141   2e-32
AY085025_1(AY085025|pid:none) Arabidopsis thaliana clone 12477 m...   141   2e-32
AK175388_1(AK175388|pid:none) Arabidopsis thaliana mRNA, complet...   141   2e-32
AK176844_1(AK176844|pid:none) Arabidopsis thaliana mRNA, complet...   141   2e-32
AC025808_34(AC025808|pid:none) Genomic sequence for Arabidopsis ...   141   2e-32

 psg: 0.88  gvh: 0.38  alm: 0.42  top: 0.40  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  8.0 %: endoplasmic reticulum

>> prediction for SSI788 is cyt

>SSI788Z.Seq
----------AGAATTCAATTACAACACCAGCAATTACAGGTTTATATCCAAGAGAAGGT
GGGGAATTTGTAGCACCATCAGCATCAATTATTGGTAATGTTAATTTAGGTGTAGGATCA
TCAGTTTGGGATAACTGTGTTATTAGAGCAGACGTTAATTACATTCATATTGGTGCATTT
ACAAATGTTCAAGATGGTACAATCATTAGAGAAGCCAATGAGCCAATATCATTGGACCAC
AATGGCAGCACAATCATTGGTGATCAAGTAACAATTGGTCACAGTTGTATACTTGAAGCA
TGTACTGTCGAAGAGAATTGTTTGATTGGAATGGGTTCAATTTTGGAACCAGAATCATAC
GTTGAAGCAAACTCAATTTTAGGTTCAAATTCAATCTTAACCAAAGGTTCTCGTATTAAA
TCTGGTGAACTTTGGGTTGGTAAACCAGCTAAATTTGTTAGAAATTTAACTGAAAATGAA
AAAATCGATATTAGTAATAGTGCTCATTCCTATATGTTAAATGCTGAAAAAGCATTTGAA
TCTTTTGGTTTAGATAAAGATTCTTTCATCTATATTGATGCTCAACAACAAGGCATTCAA
GTTGGTTGGAAAGGTAGTTATTTTTCTGAATAAAATAAAATAAATTAAAAATAAATTAAA
TTAAATAAATAATAATAAAAATAAAAATAAATTTATACCGAAAAAGTTGTAATCAAAAAC
A