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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI777
Library SS
(Link to library)
Clone ID SSI777
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16171-1
Original site URL
Representative seq. ID SSI777E
(Link to Original site)
Representative DNA sequence 
>SSI777 (SSI777Q) /CSM/SS/SSI7-D/SSI777Q.Seq.d/
ATTGGTATTTTATTATCATCTGTCTCAGATACCTATTGCCCAGGTCAAGCTTTAGTTCCA
TTAAACAGTGGTAACGTTTTTTATAAAGCTATTTAGTTTTTACACACAACAAAATGTCCA
CTGGTAACGAATCATACAATCTCAGATATCCAAAAGGCTTCAAAGGCTACCCATACAACA
TGTACAAATTAGAGGGTTACGGTACACCAAAAGGTTACATCACTTTAATTGGTGTTGTTG
CTACCCTTACTGTTAGTGGCCTCTTCTTTGCCAAAACAAGATCCAACAAACGTGAATACC
CAACTCATAACAAAGAATGGAGAGCTAAAACTTTAGCATATGCCAAAGAAACCAATGCTG
ATCCAATCTACCAATTACCAAAAGATAAAATCTAAATTATTTAAATGCCAATCATTTATA
TATTTAAAAAATTTTAAAATCAAAAACTTTTAGTAATAATAATAATTTTGTTAAGGAAAT
ATAAGATAAATACAAAATAAAATAAAAAAAAAAAAATATTGTAGAAAAAAAAAAA
sequence update 1998. 1.14
Translated Amino Acid sequence 
wyfiiiclryllprssfssikqw*rfl*SYLVFTHNKMSTGNESYNLRYPKGFKGYPYNM
YKLEGYGTPKGYITLIGVVATLTVSGLFFAKTRSNKREYPTHNKEWRAKTLAYAKETNAD
PIYQLPKDKI*ii*mpiiyifkkf*nqkllviiiillrkykintk*nkkkkil*kkk
Translated Amino Acid sequence (All Frames) 
Frame A:
igillssvsdtycpgqalvplnsgnvfykai*flhttkcplvtnhtisdiqkaskathtt
ctn*rvtvhqkvtsl*lvlllplllvasslpkqdptnvntqlitkngelkl*hmpkkpml
iqstnyqkiksklfkcqsfiylknfkiknf*****fc*gnir*iqnkikkkkycrkkk


Frame B:
lvfyyhlsqipiaqvkl*fh*tvvtffiklfsfytqqnvhw*riiqsqiskrlqrlpiqh
vqirglrytkrlhhfnwcccypyc*wpllcqnkiqqt*ipns*qrmes*nfsicqrnqc*
snlpitkr*nlnylnanhlyi*kilksktfsnnnnfvkei*dkykik*kkknivekkk


Frame C:
wyfiiiclryllprssfssikqw*rfl*SYLVFTHNKMSTGNESYNLRYPKGFKGYPYNM
YKLEGYGTPKGYITLIGVVATLTVSGLFFAKTRSNKREYPTHNKEWRAKTLAYAKETNAD
PIYQLPKDKI*ii*mpiiyifkkf*nqkllviiiillrkykintk*nkkkkil*kkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI777 (SSI777Q) /CSM/SS/SSI7-D/SSI777Q.Seq.d/                        763   0.0
VSI272 (VSI272Q) /CSM/VS/VSI2-C/VSI272Q.Seq.d/                        567   e-161
VSD613 (VSD613Q) /CSM/VS/VSD6-A/VSD613Q.Seq.d/                        561   e-159
VSF695 (VSF695Q) /CSM/VS/VSF6-D/VSF695Q.Seq.d/                        559   e-158
VSG291 (VSG291Q) /CSM/VS/VSG2-D/VSG291Q.Seq.d/                        553   e-157
VSA501 (VSA501Q) /CSM/VS/VSA5-A/VSA501Q.Seq.d/                        551   e-156
VFH861 (VFH861Q) /CSM/VF/VFH8-C/VFH861Q.Seq.d/                        551   e-156
SSH150 (SSH150Q) /CSM/SS/SSH1-C/SSH150Q.Seq.d/                        551   e-156
SSH627 (SSH627Q) /CSM/SS/SSH6-B/SSH627Q.Seq.d/                        547   e-155
VSG705 (VSG705Q) /CSM/VS/VSG7-A/VSG705Q.Seq.d/                        541   e-153
own update 2001.11.27
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X55672|X55672.1 Dictyostelium discoideum mRNA for cytochrome c oxidase subunit VI  (EC 1.9.3.1).   565  e-164  2
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.   155  7e-34  2
X90516|X90516.1 D.discoideum mRNA for vacuolar proton ATPase subunit.   155  7e-34  1
BX324131|BX324131.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-119E14.    40  2.6  3
AC111087|AC111087.8 Mus musculus, clone RP23-152O16, complete sequence.    42  4.4  2
AL078465|AL078465.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T15N24 (ESSA  project).    36  4.6  4
AC011564|AC011564.4 Homo sapiens clone RP11-4L20, LOW-PASS SEQUENCE SAMPLING.    42  6.8  1
CC294344|CC294344.1 CH261-63H4_RM1.1 CH261 Gallus gallus genomic clone CH261-63H4, DNA sequence.    42  6.8  1
AC116714|AC116714.2 Mus musculus clone RP23-122E19, WORKING DRAFT SEQUENCE, 35 unordered pieces.    42  6.8  1
AC097377|AC097377.3 Homo sapiens chromosome 2 clone RP11-83F13, complete sequence.    42     63  3
dna update 2003. 7.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P26310) RecName: Full=Cytochrome c oxidase polypeptide 6, mitoc...   189   3e-47
(P54642) RecName: Full=V-type proton ATPase proteolipid subunit;...    56   5e-07
AD1877(AD1877) hypothetical protein all0565 [imported] - Nostoc ...    35   1.6
CR380949_40(CR380949|pid:none) Candida glabrata strain CBS138 ch...    34   2.0
(P00424) RecName: Full=Cytochrome c oxidase polypeptide 5A, mito...    33   4.5
CR382126_158(CR382126|pid:none) Kluyveromyces lactis strain NRRL...    33   5.9
protein update 2009. 3. 6
PSORT 

 psg: 0.68  gvh: 0.49  alm: 0.27  top: 0.70  tms: 0.07  mit: 0.21  mip: 0.11
 nuc: 0.00  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SSI777 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSI777E
Full length Seq. 
>SSI777E.Seq
ATTGGTATTTTATTATCATCTGTCTCAGATACCTATTGCCCAGGTCAAGCTTTAGTTCCA
TTAAACAGTGGTAACGTTTTTTATAAAGCTATTTAGTTTTTACACACAACAAAATGTCCA
CTGGTAACGAATCATACAATCTCAGATATCCAAAAGGCTTCAAAGGCTACCCATACAACA
TGTACAAATTAGAGGGTTACGGTACACCAAAAGGTTACATCACTTTAATTGGTGTTGTTG
CTACCCTTACTGTTAGTGGCCTCTTCTTTGCCAAAACAAGATCCAACAAACGTGAATACC
CAACTCATAACAAAGAATGGAGAGCTAAAACTTTAGCATATGCCAAAGAAACCAATGCTG
ATCCAATCTACCAATTACCAAAAGATAAAATCTAAATTATTTAAATGCCAATCATTTATA
TATTTAAAAAATTTTAAAATCAAAAACTTTTAGTAATAATAATAATTTTGTTAAGGAAAT
ATAAGATAAATACAAAATAAAATAAAAAAAAAAAAATATTGTAGAAAAAAAAAAA
Length of full length seq. 535