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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI774
Library SS
(Link to library)
Clone ID SSI774
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15350-1
Original site URL
Representative seq. ID SSI774F
(Link to Original site)
Representative DNA sequence 
>SSI774 (SSI774Q) /CSM/SS/SSI7-D/SSI774Q.Seq.d/
TAGAAAGTTAAAATGGCAGAAAAAGAACAAATTAAATTAGTCTTAGTTGGTGATGGTGGT
GTTGGTAAAACCACTTTTGTCCAACGTCATCTTACTGGTGAATTCGAACCAAGATATATC
CCAACTCTTGGTGTATCAGTCCATCCATTAATCTTCTACACCAATTTCGGTAAAATCCAC
TTCAATGTATGGGATACCGCTGGTCAAGAAAAATTCGGTGGTTTAAGAGATGGTTATTAT
ATTCAAGGTAATTGTGCCATTATTATGTTTGATGTCACATCCCGTATTTCATACAAAAAT
GTTCCAAATTGGCACTCTGATTTAACCAGAGTTTGTGAAAACATCCCAATCGTTTTATGT
GGTAACAAAGTTGATGTTAAAGATCGTAAAGTCAAACCATCCCAAATTGTTTTCCATCGT
AGATACAATTTATCATACTATGATGTTTCAGCCAAATCAAATTACAATTTCGAAAAACCA
TTCGTCTGGTTAACATCAAAACTCCTCGGTAACAAGGCTGTCACTCTCGTTCAACAACCA
ACCTTAAAATTACCAGAAACCGTTCTCGATTCCAACTTAATGAGTTTATATGAAAAAGAA
GTCGCTGATGCTGCTGCCCTCCCATTACCAGAAGACAATGATGACTTGTAAACAAATTTA
AAAAAAAAAAACAATAXXXXXXXXXX
sequence update 1998.11.12
Translated Amino Acid sequence 
*KVKMAEKEQIKLVLVGDGGVGKTTFVQRHLTGEFEPRYIPTLGVSVHPLIFYTNFGKIH
FNVWDTAGQEKFGGLRDGYYIQGNCAIIMFDVTSRISYKNVPNWHSDLTRVCENIPIVLC
GNKVDVKDRKVKPSQIVFHRRYNLSYYDVSAKSNYNFEKPFVWLTSKLLGNKAVTLVQQP
TLKLPETVLDSNLMSLYEKEVADAAALPLPEDNDDL*tnlkkknn---
Translated Amino Acid sequence (All Frames) 
Frame A:
*KVKMAEKEQIKLVLVGDGGVGKTTFVQRHLTGEFEPRYIPTLGVSVHPLIFYTNFGKIH
FNVWDTAGQEKFGGLRDGYYIQGNCAIIMFDVTSRISYKNVPNWHSDLTRVCENIPIVLC
GNKVDVKDRKVKPSQIVFHRRYNLSYYDVSAKSNYNFEKPFVWLTSKLLGNKAVTLVQQP
TLKLPETVLDSNLMSLYEKEVADAAALPLPEDNDDL*tnlkkknn---


Frame B:
rklkwqkknkln*s*lvmvvlvkpllsnvillvnsnqdisqllvyqsih*sstpisvkst
smygiplvkknsvv*emviifkvivpllclmshpvfhtkmfqigtli*pefvktsqsfyv
vtklmlkivksnhpklfsivdtiyhtmmfqpnqitisknhssg*hqnssvtrlslsfnnq
p*nyqkpfsipt**vymkkkslmllpshyqktmmtckqi*kkkt---


Frame C:
es*ngrkrtn*islsw*wwcw*nhfcptssyw*irtkiypnswcispsinllhqfr*npl
qcmgyrwsrkirwfkrwllysr*lchyyv*chipyfiqkcsklal*fnqsl*khpnrfmw
*qs*c*rs*sqtipncfps*iqfiil*cfsqiklqfrktirlvniktpr*qgchsrsttn
lkitrnrsrfqlnefi*krsr*cccppitrrq**lvnkfkkkkq---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI774 (SSI774Q) /CSM/SS/SSI7-D/SSI774Q.Seq.d/                       1306   0.0
SLA506 (SLA506Q) /CSM/SL/SLA5-A/SLA506Q.Seq.d/                       1296   0.0
VSD229 (VSD229Q) /CSM/VS/VSD2-B/VSD229Q.Seq.d/                       1289   0.0
AHG822 (AHG822Q) /CSM/AH/AHG8-A/AHG822Q.Seq.d/                       1259   0.0
VSI212 (VSI212Q) /CSM/VS/VSI2-A/VSI212Q.Seq.d/                       1257   0.0
VSG423 (VSG423Q) /CSM/VS/VSG4-A/VSG423Q.Seq.d/                       1219   0.0
VSG164 (VSG164Q) /CSM/VS/VSG1-C/VSG164Q.Seq.d/                       1191   0.0
VSI638 (VSI638Q) /CSM/VS/VSI6-B/VSI638Q.Seq.d/                       1170   0.0
VSF607 (VSF607Q) /CSM/VS/VSF6-A/VSF607Q.Seq.d/                       1132   0.0
SLH458 (SLH458Q) /CSM/SL/SLH4-C/SLH458Q.Seq.d/                       1130   0.0
own update 2004. 8.27
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

L09720|L09720.1 Dictyostelium discoideum GTP-binding protein (TC4/RAN) mRNA, complete cds.  1306  0.0  1
AX489114|AX489114.1 Sequence 6414 from Patent WO02053728.        115  3e-55  4
AF190700|AF190700.1 Candida albicans small G-protein Gsp1p (GSP1) gene, complete cds.   115  3e-53  3
CA758831|AAF60289.1, mRNA sequence.    74  4e-51  5
BM275423|BM275423.1 PfESToaa68f04.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    92  2e-40  5
BU498261|BU498261.1 PfESToab94h09.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    92  3e-40  5
BM273404|BM273404.1 PfESToaa50c11.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    92  3e-40  5
BI815642|BI815642.1 PfESToaa31a10.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    92  3e-40  5
BI815554|BI815554.1 PfESToaa29h11.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    92  3e-40  5
BQ452295|BQ452295.1 PfESToaa94h01.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    92  3e-40  5
dna update 2003. 7.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P33519) RecName: Full=GTP-binding nuclear protein Ran; AltName:...   403   e-111
CP000499_469(CP000499|pid:none) Pichia stipitis CBS 6054 chromos...   292   6e-78
CR382138_83(CR382138|pid:none) Debaryomyces hansenii strain CBS7...   292   6e-78
(P32836) RecName: Full=GTP-binding nuclear protein GSP2/CNR2;  &...   292   7e-78
CR382121_184(CR382121|pid:none) Kluyveromyces lactis strain NRRL...   291   9e-78
(Q74ZA9) RecName: Full=GTP-binding nuclear protein GSP1/Ran;  &A...   291   2e-77
(Q6FR65) RecName: Full=GTP-binding nuclear protein GSP1/Ran;  &C...   290   4e-77
EF103373_1(EF103373|pid:none) Haliotis discus discus Ran-1-prov ...   289   5e-77
(P52301) RecName: Full=GTP-binding nuclear protein Ran; AltName:...   289   6e-77
(O17915) RecName: Full=GTP-binding nuclear protein ran-1; AltNam...   289   6e-77
protein update 2009. 6.13
PSORT 

 psg: 0.80  gvh: 0.35  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 44.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SSI774 is cyt
5' end seq. ID SSI774F
5' end seq. 
>SSI774F.Seq
TAGAAAGTTAAAATGGCAGAAAAAGAACAAATTAAATTAGTCTTAGTTGGTGATGGTGGT
GTTGGTAAAACCACTTTTGTCCAACGTCATCTTACTGGTGAATTCGAACCAAGATATATC
CCAACTCTTGGTGTATCAGTCCATCCATTAATCTTCTACACCAATTTCGGTAAAATCCAC
TTCAATGTATGGGATACCGCTGGTCAAGAAAAATTCGGTGGTTTAAGAGATGGTTATTAT
ATTCAAGGTAATTGTGCCATTATTATGTTTGATGTCACATCCCGTATTTCATACAAAAAT
GTTCCAAATTGGCACTCTGATTTAACCAGAGTTTGTGAAAACATCCCAATCGTTTTATGT
GGTAACAAAGTTGATGTTAAAGATCGTAAAGTCAAACCATCCCAAATTGTTTTCCATCGT
AGATACAATTTATCATACTATGATGTTTCAGCCAAATCAAATTACAATTTCGAAAAACCA
TTCGTCTGGTTAACATCAAAACTCCTCGGTAACAAGGCTGTCACTCTCGTTCAACAACCA
ACCTTAAAATTACCAGAAACCGTTCTCGATTCCAACTTAATGAGTTTATATGAAAAAGAA
GTCGCTGATGCTGCTGCCCTCCCATTACCAGAAGACAATGATGACTTGTAAACAAATTTA
AAAAAAAAAAACAATA----------
Length of 5' end seq. 676
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -