>SSI766 (SSI766Q) /CSM/SS/SSI7-C/SSI766Q.Seq.d/
AAACAAACTTTAATGGATAATTGTGCTTTCTTTGCTAAAATGTTTGTAAATCTCTCTGCC
ATGGCATTCAGTACTTTGGAACCATTGGATAAAAAAGAAACCAAAGAATTATCCAAAAAG
GAAAAGAAGCAATTGAAAAAAGAAAAGAAAGCTCTCAAGAAAGAAAATAAAGGTGGTAAA
GATAAAAAAGATAAAAAAGATAAAAAGGATAAAAAAGATAAAAAAGATAAAAAAGATAAA
AAAGATAAAGGTGATAAAAAAGATAAAAAAGAAAAGAAAGAAAAGAAACATGATGATGAT
AAATCAGAAGTCAAGGAAAAGAAAGAAAAGAAAGAAAAAGAAGATAGAACTATTGTAGAA
ATTAGAAATACCAAGAGTATTTTAGATGCATCTTCAACATCAGTATCAAGATTTGCTCCA
TGTATGATGTTTGTCAATTGTCCAAGTGGTCCAGCTGGTTTAGAATGTCGTATCTTAAAA
GATACTTCAATCGCTAAATTAAAATCTGAAATTTGTTGGAATCAATATCTCACTAATCTC
GTTCAATGCCAAGAAAGAGGTCTCTCCAAATGTTTCTCTAAATTTGTTGATTTACAAAAA
ACTTGTAAACAAACTGAAATTCCAAAGAAATCTTTCTCTCTTTTTGATTCACTTTCTTAT
TAAXXXXXXXXXX

KQTLMDNCAFFAKMFVNLSAMAFSTLEPLDKKETKELSKKEKKQLKKEKKALKKENKGGK
DKKDKKDKKDKKDKKDKKDKKDKGDKKDKKEKKEKKHDDDKSEVKEKKEKKEKEDRTIVE
IRNTKSILDASSTSVSRFAPCMMFVNCPSGPAGLECRILKDTSIAKLKSEICWNQYLTNL
VQCQERGLSKCFSKFVDLQKTCKQTEIPKKSFSLFDSLSY---

Frame A:
KQTLMDNCAFFAKMFVNLSAMAFSTLEPLDKKETKELSKKEKKQLKKEKKALKKENKGGK
DKKDKKDKKDKKDKKDKKDKKDKGDKKDKKEKKEKKHDDDKSEVKEKKEKKEKEDRTIVE
IRNTKSILDASSTSVSRFAPCMMFVNCPSGPAGLECRILKDTSIAKLKSEICWNQYLTNL
VQCQERGLSKCFSKFVDLQKTCKQTEIPKKSFSLFDSLSY---


Frame B:
nkl*wiivlsllkcl*islpwhsvlwnhwikkkpknypkrkrsn*kkkrklsrkkikvvk
ikkikkikrikkikkikkikkikvikkikkkrkkrnmmminqksrkrkkrkkkkiell*k
leiprvf*mhlqhqyqdllhv*clsivqvvqlv*nvvs*kilqsln*nlkfvginislis
fnakkevspnvslnlliykklvnklkfqrnlslflihfli---


Frame C:
tnfng*lcflc*nvckslchgiqyfgtig*krnqriiqkgkeaiekrkessqerk*rw*r
*kr*kr*kg*kr*kr*kr*kr*r**kr*krkerket****irsqgkerkerkrr*nycrn
*kyqeyfrcifnisikicsmydvcqlskwsswfrmsylkryfnr*iki*nllesish*sr
smprkrslqmfl*ic*ftknl*tn*nskeiflsf*ftfll---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM863 (SSM863Q) /CSM/SS/SSM8-C/SSM863Q.Seq.d/                        632   e-180
SSM781 (SSM781Q) /CSM/SS/SSM7-D/SSM781Q.Seq.d/                        632   e-180
SSI766 (SSI766Q) /CSM/SS/SSI7-C/SSI766Q.Seq.d/                        632   e-180
SSE319 (SSE319Q) /CSM/SS/SSE3-A/SSE319Q.Seq.d/                        632   e-180
SSD552 (SSD552Q) /CSM/SS/SSD5-C/SSD552Q.Seq.d/                        599   e-170
SSG702 (SSG702Q) /CSM/SS/SSG7-A/SSG702Q.Seq.d/                        539   e-152
SSJ648 (SSJ648Q) /CSM/SS/SSJ6-B/SSJ648Q.Seq.d/                        470   e-131
SSB875 (SSB875Q) /CSM/SS/SSB8-D/SSB875Q.Seq.d/                        452   e-126
SSE147 (SSE147Q) /CSM/SS/SSE1-B/SSE147Q.Seq.d/                        293   2e-78
SSH778 (SSH778Q) /CSM/SS/SSH7-D/SSH778Q.Seq.d/                        141   2e-32

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BZ060244|BZ060244.1 llf24c08.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    46  0.55  1
Z77132|Z77132.1 Caenorhabditis elegans cosmid F54D1.              44  1.3  2
AF025468|AF025468.2 Caenorhabditis elegans cosmid T27A1.    44  2.2  1
AF083225|AF083225.1 Caenorhabditis elegans nuclear receptor NHR-7 (nhr-7) mRNA, complete cds.    44  2.2  1
AC096080|AC096080.6 Rattus norvegicus clone CH230-11O12, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    40  3.3  4
AC091688|AC091688.1 Oryza sativa chromosome 9 clone BACE008E01, *** SEQUENCING IN PROGRESS ***, 9 ordered pieces.    38  4.0  2
BX547993|BX547993.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-282E16.    38  4.4  3
AC139271|AC139271.1 Homo sapiens chromosome 5 clone RP11-586K22, WORKING DRAFT SEQUENCE, 9 unordered pieces.    36  4.9  2
AP004553|AP004553.2 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1790_D02.    38  5.1  2
L23651|L23651.1 C. elegans cosmid C29E4.    38  5.4  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54IN6) RecName: Full=Uncharacterized protein DDB_G0288629;          192   6e-48

 psg: 0.78  gvh: 0.46  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 1.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: cytoplasmic

>> prediction for SSI766 is nuc

>SSI766F.Seq
AAACAAACTTTAATGGATAATTGTGCTTTCTTTGCTAAAATGTTTGTAAATCTCTCTGCC
ATGGCATTCAGTACTTTGGAACCATTGGATAAAAAAGAAACCAAAGAATTATCCAAAAAG
GAAAAGAAGCAATTGAAAAAAGAAAAGAAAGCTCTCAAGAAAGAAAATAAAGGTGGTAAA
GATAAAAAAGATAAAAAAGATAAAAAGGATAAAAAAGATAAAAAAGATAAAAAAGATAAA
AAAGATAAAGGTGATAAAAAAGATAAAAAAGAAAAGAAAGAAAAGAAACATGATGATGAT
AAATCAGAAGTCAAGGAAAAGAAAGAAAAGAAAGAAAAAGAAGATAGAACTATTGTAGAA
ATTAGAAATACCAAGAGTATTTTAGATGCATCTTCAACATCAGTATCAAGATTTGCTCCA
TGTATGATGTTTGTCAATTGTCCAAGTGGTCCAGCTGGTTTAGAATGTCGTATCTTAAAA
GATACTTCAATCGCTAAATTAAAATCTGAAATTTGTTGGAATCAATATCTCACTAATCTC
GTTCAATGCCAAGAAAGAGGTCTCTCCAAATGTTTCTCTAAATTTGTTGATTTACAAAAA
ACTTGTAAACAAACTGAAATTCCAAAGAAATCTTTCTCTCTTTTTGATTCACTTTCTTAT
TAA----------