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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI761
Library SS
(Link to library)
Clone ID SSI761
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09984-1
Original site URL
Representative seq. ID SSI761P
(Link to Original site)
Representative DNA sequence 
>SSI761 (SSI761Q) /CSM/SS/SSI7-C/SSI761Q.Seq.d/
GCGATCTTAGAACTAGCAAAAATGATCTCAAATGTTTTAAAGAGAGCCTCTGTTTTGGCT
AGATCAAATGGCATTCAATCAGCCTTTTATACTACAACTGCTAAAACTGAAGCATCTTCA
TCTCCACAAATGAAAATTAAAACTGCTGAAAAGAAAGATCACTTTGTTAATTTCCAAGTT
TATAGATATAATGAAGAAACAACAGCAAAACCATATATTCAAACTTATAATATTAATCTT
AAAGATTGTGGACCAATGGTTTTGGATGCATTATTATTAATTAAGAATAATATTGATCCA
ACATTATCATTCCGTCGTTCATGTCGTGAAGGTATTTGTGGTTCATGTGCAATGAATTTA
AATGGTAGCAACACATTAGCATGTACCAAAAAGATCACCGATTGTTTATCAGGTGATACA
GTTAAAGTTTACCCATTACCACACATGCATGTCGTTAGAGATTTAATTCCAGATTTATCA
CATTTCTATACACAACACAAATCAATTAAACCATGGTTAGAGCCAGCCGTTGATGTACCA
AGATACAATGGTAAGGAAATTCTTCAATCAAAAGAAAACAGACATAAATTAGATGGTCTT
TATGAATGTATTTTATGTGCTTGTTGTTCAXXXXXXXXXXTGCTGTTTGTCCAAAAGGTT
TAAATCCAGGTAAAAGTATTGCTAATATTAAATATTTATTAGCACACAATTAATTTTTTT
ACCAATTAAACTTTATTTTATAAAAAAAACAAAACAAAACAACACTCAAAAAAAAAAATA
ATAATAATAATAATAATAATAATAATTATTTTTTTAAATAATAATTTTTATTTTAATTTA
AATAATATAAATAATAATAATTATACNAAAATTAAAAAAAAAAAAAAAAAATAACAACAA
CTTAATAGTAATTGATATAATAAAATATAAATTAAAAAAA
sequence update 1998.11. 3
Translated Amino Acid sequence 
AILELAKMISNVLKRASVLARSNGIQSAFYTTTAKTEASSSPQMKIKTAEKKDHFVNFQV
YRYNEETTAKPYIQTYNINLKDCGPMVLDALLLIKNNIDPTLSFRRSCREGICGSCAMNL
NGSNTLACTKKITDCLSGDTVKVYPLPHMHVVRDLIPDLSHFYTQHKSIKPWLEPAVDVP
RYNGKEILQSKENRHKLDGLYECILCACCS---

---AVCPKGLNPGKSIANIKYLLAHN*ffyqlnfil*kkqnkttlkkknnnnnnnnnnyf
fk**flf*fk*yk***lyxn*kkkkkittt***li**nin*k
Translated Amino Acid sequence (All Frames) 
Frame A:
AILELAKMISNVLKRASVLARSNGIQSAFYTTTAKTEASSSPQMKIKTAEKKDHFVNFQV
YRYNEETTAKPYIQTYNINLKDCGPMVLDALLLIKNNIDPTLSFRRSCREGICGSCAMNL
NGSNTLACTKKITDCLSGDTVKVYPLPHMHVVRDLIPDLSHFYTQHKSIKPWLEPAVDVP
RYNGKEILQSKENRHKLDGLYECILCACCS---

---cclskrfksr*kyc*y*ifistqliflpiklyfikktkqnntqkkk*********lf
f*iiifili*ii*iiiiixklkkkkknnnnlividiikyklkk

Frame B:
rs*n*qk*sqmf*replfwldqmafnqpfilqllklkhlhlhk*klkllkrkitlliskf
idimkkqqqnhifkliililkivdqwfwmhyy*lriiliqhyhsvvhvvkvfvvhvq*i*
mvath*hvpkrspivyqviqlkfthyhtcmslei*fqiyhisihntnqlnhg*sqplmyq
dtmvrkffnqkktdin*mvfmnvfyvlvv---

---AVCPKGLNPGKSIANIKYLLAHN*ffyqlnfil*kkqnkttlkkknnnnnnnnnnyf
fk**flf*fk*yk***lyxn*kkkkkittt***li**nin*k

Frame C:
dlrtskndlkcfkeslcfg*ikwhsisllyync*n*sifistnen*nc*kerslc*fpsl
*i**rnnsktiysnl*y*s*rlwtngfgciiin*e*y*sniiipsfms*rylwfmcnefk
w*qhismyqkdhrlfir*ys*slpitthacr*rfnsrfitflyttqin*tmvrasr*ctk
iqw*gnssikrkqt*irwsl*myfmcllf---

---lfvqkv*iqvkvllilniy*htinfftn*tlfykknktkqhskkkiiiiiiiiiiif
lnnnfyfnlnninnnnytkikkkkkk*qqlnsn*ynki*ikk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI761 (SSI761Q) /CSM/SS/SSI7-C/SSI761Q.Seq.d/                       1368   0.0
VFN649 (VFN649Q) /CSM/VF/VFN6-C/VFN649Q.Seq.d/                       1217   0.0
VFJ293 (VFJ293Q) /CSM/VF/VFJ2-D/VFJ293Q.Seq.d/                       1217   0.0
SSF464 (SSF464Q) /CSM/SS/SSF4-C/SSF464Q.Seq.d/                       1217   0.0
SSD342 (SSD342Q) /CSM/SS/SSD3-B/SSD342Q.Seq.d/                       1217   0.0
SSA622 (SSA622Q) /CSM/SS/SSA6-A/SSA622Q.Seq.d/                       1217   0.0
AFI476 (AFI476Q) /CSM/AF/AFI4-D/AFI476Q.Seq.d/                       1217   0.0
VFI723 (VFI723Q) /CSM/VF/VFI7-A/VFI723Q.Seq.d/                       1211   0.0
VFJ572 (VFJ572Q) /CSM/VF/VFJ5-C/VFJ572Q.Seq.d/                       1203   0.0
AFH631 (AFH631Q) /CSM/AF/AFH6-B/AFH631Q.Seq.d/                       1191   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL440112|AL440112.1 T7 end of clone BD0AA010A12 of library BD0AA from strain CBS 94 of  Candida tropicalis.    54  2e-27  6
BM952156|BM952156.1 rc55h11.y1 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5' similar to TR:O44074 O44074 IRON-SULFUR SUBUNIT OF SUCCINATE DEHYDROGENASE. ;, mRNA sequence.    60  3e-22  4
BM900997|BM900997.1 rc43h09.y1 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5' similar to TR:O44074 O44074 IRON-SULFUR SUBUNIT OF SUCCINATE DEHYDROGENASE. ;, mRNA sequence.    60  3e-21  4
BM902116|BM902116.1 rc32d03.y1 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5' similar to TR:O44074 O44074 IRON-SULFUR SUBUNIT OF SUCCINATE DEHYDROGENASE. ;, mRNA sequence.    60  3e-21  4
BQ090079|BQ090079.1 rc61d03.y1 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5' similar to TR:O44074 O44074 IRON-SULFUR SUBUNIT OF SUCCINATE DEHYDROGENASE. ;, mRNA sequence.    60  2e-19  4
BI746425|BI746425.1 rm26h11.y1 Meloidogyne arenaria egg pAMP1 v1 Chiapelli McCarter Meloidogyne arenaria cDNA 5' similar to TR:O44074 O44074 IRON-SULFUR SUBUNIT OF SUCCINATE DEHYDROGENASE. ;, mRNA sequence.    60  2e-18  3
BM884063|BM884063.1 rc18h08.y1 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5' similar to TR:O44074 O44074 IRON-SULFUR SUBUNIT OF SUCCINATE DEHYDROGENASE. ;, mRNA sequence.    60  3e-17  4
BI772842|BI772842.1 kp52h08.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to TR:O44074 O44074 IRON-SULFUR SUBUNIT OF SUCCINATE DEHYDROGENASE. ;, mRNA sequence.    68  3e-17  3
BM900301|BM900301.1 rc17a11.y1 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5' similar to TR:O44074 O44074 IRON-SULFUR SUBUNIT OF SUCCINATE DEHYDROGENASE. ;, mRNA sequence.    60  6e-15  4
BI747343|BI747343.1 rm39a04.y1 Meloidogyne arenaria egg pAMP1 v1 Chiapelli McCarter Meloidogyne arenaria cDNA 5' similar to TR:O44074 O44074 IRON-SULFUR SUBUNIT OF SUCCINATE DEHYDROGENASE. ;, mRNA sequence.    60  2e-14  3
dna update 2003. 7.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P21914) RecName: Full=Succinate dehydrogenase [ubiquinone] iron...   214   3e-54
BT081063_1(BT081063|pid:none) Caligus clemensi clone ccle-evs-51...   209   1e-52
BT075415_1(BT075415|pid:none) Osmerus mordax clone omor-eva-520-...   209   1e-52
(Q70KF8) RecName: Full=Succinate dehydrogenase [ubiquinone] iron...   208   2e-52
AE003849_1070(AE003849|pid:none) Xylella fastidiosa 9a5c, comple...   208   2e-52
AY726619_1(AY726619|pid:none) Botryotinia fuckeliana strain 02-3...   207   3e-52
BT078452_1(BT078452|pid:none) Lepeophtheirus salmonis clone lsal...   207   3e-52
AY850306_1(AY850306|pid:none) Magnaporthe grisea succinate dehyd...   207   4e-52
CP000502_138(CP000502|pid:none) Pichia stipitis CBS 6054 chromos...   207   5e-52
FB792051_1(FB792051|pid:none) Sequence 11324 from Patent WO20080...   207   5e-52
protein update 2009. 6.13
PSORT 

 psg: 0.62  gvh: 0.52  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSI761 is nuc
5' end seq. ID SSI761F
5' end seq. 
>SSI761F.Seq
GCGATCTTAGAACTAGCAAAAATGATCTCAAATGTTTTAAAGAGAGCCTCTGTTTTGGCT
AGATCAAATGGCATTCAATCAGCCTTTTATACTACAACTGCTAAAACTGAAGCATCTTCA
TCTCCACAAATGAAAATTAAAACTGCTGAAAAGAAAGATCACTTTGTTAATTTCCAAGTT
TATAGATATAATGAAGAAACAACAGCAAAACCATATATTCAAACTTATAATATTAATCTT
AAAGATTGTGGACCAATGGTTTTGGATGCATTATTATTAATTAAGAATAATATTGATCCA
ACATTATCATTCCGTCGTTCATGTCGTGAAGGTATTTGTGGTTCATGTGCAATGAATTTA
AATGGTAGCAACACATTAGCATGTACCAAAAAGATCACCGATTGTTTATCAGGTGATACA
GTTAAAGTTTACCCATTACCACACATGCATGTCGTTAGAGATTTAATTCCAGATTTATCA
CATTTCTATACACAACACAAATCAATTAAACCATGGTTAGAGCCAGCCGTTGATGTACCA
AGATACAATGGTAAGGAAATTCTTCAATCAAAAGAAAACAGACATAAATTAGATGGTCTT
TATGAATGTATTTTATGTGCTTGTTGTTCA----------
Length of 5' end seq. 630
3' end seq. ID SSI761Z
3' end seq. 
>SSI761Z.Seq
----------TGCTGTTTGTCCAAAAGGTTTAAATCCAGGTAAAAGTATTGCTAATATTA
AATATTTATTAGCACACAATTAATTTTTTTACCAATTAAACTTTATTTTATAAAAAAAAC
AAAACAAAACAACACTCAAAAAAAAAAATAATAATAATAATAATAATAATAATAATTATT
TTTTTAAATAATAATTTTTATTTTAATTTAAATAATATAAATAATAATAATTATACNAAA
ATTAAAAAAAAAAAAAAAAAATAACAACAACTTAATAGTAATTGATATAATAAAATATAA
ATTAAAAAAA
Length of 3' end seq. 300
Connected seq. ID SSI761P
Connected seq. 
>SSI761P.Seq
GCGATCTTAGAACTAGCAAAAATGATCTCAAATGTTTTAAAGAGAGCCTCTGTTTTGGCT
AGATCAAATGGCATTCAATCAGCCTTTTATACTACAACTGCTAAAACTGAAGCATCTTCA
TCTCCACAAATGAAAATTAAAACTGCTGAAAAGAAAGATCACTTTGTTAATTTCCAAGTT
TATAGATATAATGAAGAAACAACAGCAAAACCATATATTCAAACTTATAATATTAATCTT
AAAGATTGTGGACCAATGGTTTTGGATGCATTATTATTAATTAAGAATAATATTGATCCA
ACATTATCATTCCGTCGTTCATGTCGTGAAGGTATTTGTGGTTCATGTGCAATGAATTTA
AATGGTAGCAACACATTAGCATGTACCAAAAAGATCACCGATTGTTTATCAGGTGATACA
GTTAAAGTTTACCCATTACCACACATGCATGTCGTTAGAGATTTAATTCCAGATTTATCA
CATTTCTATACACAACACAAATCAATTAAACCATGGTTAGAGCCAGCCGTTGATGTACCA
AGATACAATGGTAAGGAAATTCTTCAATCAAAAGAAAACAGACATAAATTAGATGGTCTT
TATGAATGTATTTTATGTGCTTGTTGTTCA----------TGCTGTTTGTCCAAAAGGTT
TAAATCCAGGTAAAAGTATTGCTAATATTAAATATTTATTAGCACACAATTAATTTTTTT
ACCAATTAAACTTTATTTTATAAAAAAAACAAAACAAAACAACACTCAAAAAAAAAAATA
ATAATAATAATAATAATAATAATAATTATTTTTTTAAATAATAATTTTTATTTTAATTTA
AATAATATAAATAATAATAATTATACNAAAATTAAAAAAAAAAAAAAAAAATAACAACAA
CTTAATAGTAATTGATATAATAAAATATAAATTAAAAAAA
Length of connected seq. 930
Full length Seq ID -
Full length Seq. -
Length of full length seq. -