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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI760
Library SS
(Link to library)
Clone ID SSI760
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04900-1
Original site URL
Representative seq. ID SSI760E
(Link to Original site)
Representative DNA sequence 
>SSI760 (SSI760Q) /CSM/SS/SSI7-C/SSI760Q.Seq.d/
ATTTAAACTATCAACACCACCACTATAATTATAAAAAAAAAATGTCAAAAAATGGAGAAG
CATTTATTTTAGATGNTCGTGCAAGAGCACTTGCAAATTATCCACATATGAGAAAAGCAG
GTGACTTTTTATTTGTATCAGGTATTTCATCACGTAGACCNGATAATACTTATGAAGGTG
TTCATGTCGATGAAAATGGTAAAGTTACACTCAACATTGAACAACAAACTAGAGCAGTCA
TTGAAAACATTAGAACCATCTTAAAATCAGCAGGAGCTGATCTCGAAAATATCATTGATC
TCACTGTTTTCTTAGTAGATATGAAAGATTACAATGGTTTCAATTTNGCATACAATGATT
ATTTCAAAATTGAAACTGGTCCAACTAGAACCACCGTTGCTGTTCATCAATTACCAAATC
CAAATCTTTTAATTGAAATTAAAGCAACTGCATTATGTAATAAATAAAATAGAAAATAAA
ATAAAATAAAATAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1999. 4.21
Translated Amino Acid sequence 
LNYQHHHYNYKKKMSKNGEAFILDXRARALANYPHMRKAGDFLFVSGISSRRPDNTYEGV
HVDENGKVTLNIEQQTRAVIENIRTILKSAGADLENIIDLTVFLVDMKDYNGFNXAYNDY
FKIETGPTRTTVAVHQLPNPNLLIEIKATALCNK*nrk*nkik*ikkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
i*tintttiiikkkcqkmekhlf*mxvqehlqiihi*ekqvtfylyqvfhhvdxiilmkv
fmsmkmvklhstlnnkleqslktleps*nqqeliskislislfs**i*kitmvsixhtmi
isklklvqleppllfinyqiqif*lklkqlhyvinkienkik*nk*kkkkkkkkkkk


Frame B:
fklstppl*l*kknvkkwrsiyfrxsckstcklstyeksr*lficiryfit*tx*yl*rc
scr*kw*sytqh*ttn*ssh*kh*nhlkisrs*srkyh*shcflsryerlqwfqfxiq*l
fqn*nwsn*nhrccssitksksfn*n*sncim**ik*kik*nkinkkkkkkkkkkkk


Frame C:
LNYQHHHYNYKKKMSKNGEAFILDXRARALANYPHMRKAGDFLFVSGISSRRPDNTYEGV
HVDENGKVTLNIEQQTRAVIENIRTILKSAGADLENIIDLTVFLVDMKDYNGFNXAYNDY
FKIETGPTRTTVAVHQLPNPNLLIEIKATALCNK*nrk*nkik*ikkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC845 (VSC845Q) /CSM/VS/VSC8-B/VSC845Q.Seq.d/                        827   0.0
SSI760 (SSI760Q) /CSM/SS/SSI7-C/SSI760Q.Seq.d/                        827   0.0
SSD637 (SSD637Q) /CSM/SS/SSD6-B/SSD637Q.Seq.d/                        204   1e-51
VSK442 (VSK442Q) /CSM/VS/VSK4-B/VSK442Q.Seq.d/                         36   0.52
VHL278 (VHL278Q) /CSM/VH/VHL2-D/VHL278Q.Seq.d/                         36   0.52
SLC243 (SLC243Q) /CSM/SL/SLC2-B/SLC243Q.Seq.d/                         36   0.52
AFL266 (AFL266Q) /CSM/AF/AFL2-C/AFL266Q.Seq.d/                         36   0.52
AFI693 (AFI693Q) /CSM/AF/AFI6-D/AFI693Q.Seq.d/                         36   0.52
AFG653 (AFG653Q) /CSM/AF/AFG6-C/AFG653Q.Seq.d/                         36   0.52
VSI505 (VSI505Q) /CSM/VS/VSI5-A/VSI505Q.Seq.d/                         34   2.1
own update 2002.12.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   803  0.0  2
AC012147|AC012147.7 Mus musculus, clone RP23-191A4, complete sequence.    46  0.45  1
AC015797|AC015797.5 Mus musculus clone RP23-191A4, WORKING DRAFT SEQUENCE, 3 unordered pieces.    46  0.45  1
BX005039|BX005039.11 Mouse DNA sequence from clone RP23-391M18 on chromosome 2.    46  0.83  2
BX004757|BX004757.6 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP23-276F22.    46  1.0  2
AC146522|AC146522.1 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0039A07, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces.    44  1.8  1
BZ518937|BZ518937.1 BOMQB25TF BO_2_3_KB Brassica oleracea genomic clone BOMQB25, DNA sequence.    44  1.8  1
AJ004828|AJ004828.2 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone BAC394.    46  3.1  2
AC146195|AC146195.2 Pan troglodytes chromosome UNK clone RP43-25F5, WORKING DRAFT SEQUENCE, 2 unordered pieces.    42  3.5  2
AL807247|AL807247.10 Mouse DNA sequence from clone RP23-178D3 on chromosome 4.    46  3.7  2
dna update 2003. 9. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_72(AC116305|pid:none) Dictyostelium discoideum chromoso...   275   7e-73
CP000353_1583(CP000353|pid:none) Ralstonia metallidurans CH34 me...   165   6e-40
CP001052_1432(CP001052|pid:none) Burkholderia phytofirmans PsJN ...   158   9e-38
AM747721_2136(AM747721|pid:none) Burkholderia cenocepacia J2315 ...   158   9e-38
CP000150_1112(CP000150|pid:none) Burkholderia sp. 383 chromosome...   153   2e-36
AB088043_13(AB088043|pid:none) Pseudomonas fluorescens 3-hydroxy...   152   5e-36
CP000317_221(CP000317|pid:none) Polaromonas sp. JS666 plasmid 1,...   150   2e-35
CP000270_3262(CP000270|pid:none) Burkholderia xenovorans LB400 c...   149   4e-35
AF319593_8(AF319593|pid:none) Pseudomonas putida plasmid pNB1 am...   148   1e-34
CP000360_684(CP000360|pid:none) Acidobacteria bacterium Ellin345...   146   3e-34
protein update 2009. 7. 8
PSORT 

 psg: 0.40  gvh: 0.49  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: vesicles of secretory system
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SSI760 is nuc
5' end seq. ID SSI760F
5' end seq. 
>SSI760F.Seq
ATTTAAACTATCAACACCACCACTATAATTATAAAAAAAAAATGTCAAAAAATGGAGAAG
CATTTATTTTAGATGATCGTGCAAGAGCACTTGCAAATTATCCACATATGAGAAAAGCAG
GTGACTTTTTATTTGTATCAGGTATTTCATCACGTAGACCAGATAATACTTATGAAGGTG
TTCATGTCGATGAAAATGGTAAAGTTACACTCAACATTGAACAACAAACTAGAGCAGTCA
TTGAAAACATTAGAACCATCTTAAAATCAGCAGGAGCTGATCTCGAAAATATCATTGATC
TCACTGTTTTCTTAGTAGATATGAAAGATTACAATGGTTTCAATTTAGCATACAATGATT
ATTTCAAAATTGAAACTGGTCCAACTAGAACCACCGTTGCTGTTCATCAATTACCAAATC
CAAATCTTTTAATTGAAATTAAAGCAACTGCATTATGTAATAAATAAAATAGAAAATAAA
ATAAAATAAAATAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 5' end seq. 533
3' end seq. ID SSI760Z
3' end seq. 
>SSI760Z.Seq
----------AAAAAAAAATGTCAAAAAATGGAGAAGCATTTATTTTAGATGCTCGTGCA
AGAGCACTTGCAAATTATCCACATATGAGAAAAGCAGGTGACTTTTTATTTGTATCAGGT
ATTTCATCACGTAGACCGGATAATACTTATGAAGGTGTTCATGTCGATGAAAATGGTAAA
GTTACACTCAACATTGAACAACAAACTAGAGCAGTCATTGAAAACATTAGAACCATCTTA
AAATCAGCAGGAGCTGATCTCGAAAATATCATTGATCTCACTGTTTTCTTAGTAGATATG
AAAGATTACAATGGTTTCAATTTGGCATACAATGATTATTTCAAAATTGAAACTGGTCCA
ACTAGAACCACCGTTGCTGTTCATNAATTACCAAATCCAAATCTTTTAATTGAAATTAAA
GCAACTGCATTATGTAATAAATAAAATAGAAAATAAAATAAAATAAAATAAATAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 500
Connected seq. ID SSI760P
Connected seq. 
>SSI760P.Seq
ATTTAAACTATCAACACCACCACTATAATTATAAAAAAAAAATGTCAAAAAATGGAGAAG
CATTTATTTTAGATGATCGTGCAAGAGCACTTGCAAATTATCCACATATGAGAAAAGCAG
GTGACTTTTTATTTGTATCAGGTATTTCATCACGTAGACCAGATAATACTTATGAAGGTG
TTCATGTCGATGAAAATGGTAAAGTTACACTCAACATTGAACAACAAACTAGAGCAGTCA
TTGAAAACATTAGAACCATCTTAAAATCAGCAGGAGCTGATCTCGAAAATATCATTGATC
TCACTGTTTTCTTAGTAGATATGAAAGATTACAATGGTTTCAATTTAGCATACAATGATT
ATTTCAAAATTGAAACTGGTCCAACTAGAACCACCGTTGCTGTTCATCAATTACCAAATC
CAAATCTTTTAATTGAAATTAAAGCAACTGCATTATGTAATAAATAAAATAGAAAATAAA
ATAAAATAAAATAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------
---AAAAAAAAATGTCAAAAAATGGAGAAGCATTTATTTTAGATGCTCGTGCAAGAGCAC
TTGCAAATTATCCACATATGAGAAAAGCAGGTGACTTTTTATTTGTATCAGGTATTTCAT
CACGTAGACCGGATAATACTTATGAAGGTGTTCATGTCGATGAAAATGGTAAAGTTACAC
TCAACATTGAACAACAAACTAGAGCAGTCATTGAAAACATTAGAACCATCTTAAAATCAG
CAGGAGCTGATCTCGAAAATATCATTGATCTCACTGTTTTCTTAGTAGATATGAAAGATT
ACAATGGTTTCAATTTGGCATACAATGATTATTTCAAAATTGAAACTGGTCCAACTAGAA
CCACCGTTGCTGTTCATNAATTACCAAATCCAAATCTTTTAATTGAAATTAAAGCAACTG
CATTATGTAATAAATAAAATAGAAAATAAAATAAAATAAAATAAATAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 1033
Full length Seq ID SSI760E
Full length Seq. 
>SSI760E.Seq
ATTTAAACTATCAACACCACCACTATAATTATAAAAAAAAAATGTCAAAAAATGGAGAAG
CATTTATTTTAGATGNTCGTGCAAGAGCACTTGCAAATTATCCACATATGAGAAAAGCAG
GTGACTTTTTATTTGTATCAGGTATTTCATCACGTAGACCNGATAATACTTATGAAGGTG
TTCATGTCGATGAAAATGGTAAAGTTACACTCAACATTGAACAACAAACTAGAGCAGTCA
TTGAAAACATTAGAACCATCTTAAAATCAGCAGGAGCTGATCTCGAAAATATCATTGATC
TCACTGTTTTCTTAGTAGATATGAAAGATTACAATGGTTTCAATTTNGCATACAATGATT
ATTTCAAAATTGAAACTGGTCCAACTAGAACCACCGTTGCTGTTCATCAATTACCAAATC
CAAATCTTTTAATTGAAATTAAAGCAACTGCATTATGTAATAAATAAAATAGAAAATAAA
ATAAAATAAAATAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 533