SSI759
Library SS
(Link to library)
Clone ID SSI759
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16327-1
Original site URL
Representative seq. ID SSI759F
(Link to Original site)
Representative DNA sequence
>SSI759 (SSI759Q) /CSM/SS/SSI7-C/SSI759Q.Seq.d/
TTTTATTAATATAATTCTTAATAATTATAAAAAAAAAAAAAAAAAAACAACCAAAATATT
ATATTATTTTTTGTAAATATAAATTAAAAAAATGAAATTCCAACATACATTTATTGCATT
ATTATCACTATTAACATATGCAAATGCATATGATTATTTCACAACAACATTGGCCAATCA
AAATCCAGTTTGTGCTTCAGTAGATGTCATACAAAATGTTTGTACTGAGGTTTGTGGTAG
ATTTGTCCGTTACATTCCTGATGCTACCAATACAAATCAATTCACTTTTGCCGAATATAC
TACAAACCAATGTACTGTTCAAGTAACACCAGCTGTAACAAATACATTTACTTGCGCTGA
TCAAACTTCTTCACATGCACTCGGTTCTGATTGGAGTGGAGTTTGTAAAATCACTGCCAC
ACCCGCACCAACAGTTACACCAACAGTTACACCAACAGTTACACCAACAGTAACACCAAC
ACCAACAAATACACCAAATCCAACCCCATCCCAAACATCAACAACAACTGGTTCTGCTTC
AACTGTTGTTGCAAGTTTATCACTCATTATTTTCTCAATGATTCTTTCCCTTTGTTAATT
TTAAAAATAXXXXXXXXXX
sequence update 1998.11.12
Translated Amino Acid sequence
finiilnnykkkkkkttkilyyfl*i*IKKMKFQHTFIALLSLLTYANAYDYFTTTLANQ
NPVCASVDVIQNVCTEVCGRFVRYIPDATNTNQFTFAEYTTNQCTVQVTPAVTNTFTCAD
QTSSHALGSDWSGVCKITATPAPTVTPTVTPTVTPTVTPTPTNTPNPTPSQTSTTTGSAS
TVVASLSLIIFSMILSLC*f*k---


Translated Amino Acid sequence (All Frames)
Frame A:
fy*yns**l*kkkkknnqniilffvnin*kneiptyiyciiitinickci*lfhnnigqs
ksslcfsrchtkcly*glw*icplhs*cyqyksihfcriyykpmycssntscnkyiylr*
snfftctrf*lewsl*nhchtrtnsytnsytnsytnsntntnkytksnpipninnnwfcf
nccckfithyflndsfpllilk---


Frame B:
finiilnnykkkkkkttkilyyfl*i*IKKMKFQHTFIALLSLLTYANAYDYFTTTLANQ
NPVCASVDVIQNVCTEVCGRFVRYIPDATNTNQFTFAEYTTNQCTVQVTPAVTNTFTCAD
QTSSHALGSDWSGVCKITATPAPTVTPTVTPTVTPTVTPTPTNTPNPTPSQTSTTTGSAS
TVVASLSLIIFSMILSLC*f*k---


Frame C:
lli*fliiikkkkkkqpkyyiifckyklkk*nsnihllhyyhy*hmqmhmiisqqhwpik
iqfvlq*msykmfvlrfvvdlsvtflmlpiqinsllpnilqtnvlfk*hql*qihllali
kllhmhsvligvefvkslphphqqlhqqlhqqlhqq*hqhqqihqiqphpkhqqqlvllq
lllqvyhslfsq*ffpfvnfkn---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSI759 (SSI759Q) /CSM/SS/SSI7-C/SSI759Q.Seq.d/ 1072 0.0
SSI680 (SSI680Q) /CSM/SS/SSI6-D/SSI680Q.Seq.d/ 1072 0.0
SSC554 (SSC554Q) /CSM/SS/SSC5-C/SSC554Q.Seq.d/ 1072 0.0
SLG216 (SLG216Q) /CSM/SL/SLG2-A/SLG216Q.Seq.d/ 1068 0.0
SLC402 (SLC402Q) /CSM/SL/SLC4-A/SLC402Q.Seq.d/ 1061 0.0
SHB196 (SHB196Q) /CSM/SH/SHB1-D/SHB196Q.Seq.d/ 1061 0.0
CHL273 (CHL273Q) /CSM/CH/CHL2-D/CHL273Q.Seq.d/ 1061 0.0
CHL169 (CHL169Q) /CSM/CH/CHL1-C/CHL169Q.Seq.d/ 1053 0.0
SHD636 (SHD636Q) /CSM/SH/SHD6-B/SHD636Q.Seq.d/ 1047 0.0
AHM287 (AHM287Q) /CSM/AH/AHM2-D/AHM287Q.Seq.d/ 1045 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X15980|X15980.1 Dictyostelium discoideum D19 gene 5'-flanking region. 1017 0.0 3
M20909|M20909.1 Dictyostelium discoideum pre-spore-specific cell surface glycoprotein PsA (D19) mRNA, complete cds. 1017 0.0 3
BD075065|BD075065.1 Expression of gonadotropin in Dictyostelium. 111 1e-20 1
A98322|A98322.1 Sequence 1 from Patent WO9913081. 111 1e-20 1
A21625|A21625.1 expression vector pMUW1630. 105 6e-19 1
U20661|U20661.1 Dictyostelium discoideum unknown internal repeat protein gene, complete cds, and unknown orf1, orf2 and orf3 genes, partial cds. 66 8e-08 2
CB079318|CB079318.1 hp69e08.b1 Hedyotis terminalis flower - Stage 2 (NYBG) Hedyotis terminalis cDNA clone hp69e08, mRNA sequence. 44 4e-05 3
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 40 1e-04 7
U16308|U16308.1 Caldocellum saccharolyticum endoglucanase/mannanase (celC) pseudogene, complete cds. 54 3e-04 2
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 38 0.001 10
dna update 2003. 7.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54LC3) RecName: Full=Ponticulin-like protein C2; Flags: Precur... 53 6e-06
A98322_1(A98322|pid:none) Sequence 1 from Patent WO9913081. 41 0.031
(P36170) RecName: Full=Putative uncharacterized protein YKR102W;... 33 4.9

protein update 2009. 2. 1
PSORT

psg: 0.96 gvh: 0.78 alm: 0.21 top: 0.17 tms: 0.07 mit: 0.32 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 1.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 1.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

36.0 %: plasma membrane
32.0 %: extracellular, including cell wall
20.0 %: endoplasmic reticulum
12.0 %: Golgi

>> prediction for SSI759 is pla

5' end seq. ID SSI759F
5' end seq.
>SSI759F.Seq
TTTTATTAATATAATTCTTAATAATTATAAAAAAAAAAAAAAAAAAACAACCAAAATATT
ATATTATTTTTTGTAAATATAAATTAAAAAAATGAAATTCCAACATACATTTATTGCATT
ATTATCACTATTAACATATGCAAATGCATATGATTATTTCACAACAACATTGGCCAATCA
AAATCCAGTTTGTGCTTCAGTAGATGTCATACAAAATGTTTGTACTGAGGTTTGTGGTAG
ATTTGTCCGTTACATTCCTGATGCTACCAATACAAATCAATTCACTTTTGCCGAATATAC
TACAAACCAATGTACTGTTCAAGTAACACCAGCTGTAACAAATACATTTACTTGCGCTGA
TCAAACTTCTTCACATGCACTCGGTTCTGATTGGAGTGGAGTTTGTAAAATCACTGCCAC
ACCCGCACCAACAGTTACACCAACAGTTACACCAACAGTTACACCAACAGTAACACCAAC
ACCAACAAATACACCAAATCCAACCCCATCCCAAACATCAACAACAACTGGTTCTGCTTC
AACTGTTGTTGCAAGTTTATCACTCATTATTTTCTCAATGATTCTTTCCCTTTGTTAATT
TTAAAAATA----------
Length of 5' end seq. 609
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -