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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI739
Library SS
(Link to library)
Clone ID SSI739
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16581-1
Original site URL
Representative seq. ID SSI739Z
(Link to Original site)
Representative DNA sequence 
>SSI739 (SSI739Q) /CSM/SS/SSI7-B/SSI739Q.Seq.d/
XXXXXXXXXXAAAATAAAGGGAAATAATAATAGGCTATACCATGGGACTTAGAGAAAATA
AAAAAGTTTAAAAAAAAAATAAAAAATAATAAAAAATAAAAAAAAAATAAAAAAAAAAAC
TTTTAAAACTCTCCTTCTACTTTTTGGTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTC
TCCCCCTTTGNNTTGCATTACTCTCCTCAAGCTCAGATAATCTCGAGCTCCACTAACGAT
GCTCCTCAAGTATCCTCAGGGTTAATCCATCACATTCCTATGCAACTCTCTCAAATGTAT
AAGCAGTCTTTAACAAAAAAAAATATTTAAAAAAAAAAAAAAAAAGAAAAAAAAAAAATA
TTAAAATATTTTTTTCAAAATCAATTTTAAATATAAATAATAATGTTTTTTTTTTTTTTA
TAAAAAAAAGAAAGAAAAAAAGA
sequence update 1998. 1.11
Translated Amino Acid sequence 
---nkgk***aipwdlekikkfkkkiknnkk*kknkkknf*nspstfwcfc*ANAKVSLS
PFXLHYSPQAQIISSSTNDAPQVSSGLIHHIPMQLSQMYKQSLTKKNI*kkkkkekkkil
kyffqnqf*i*iimffffl*kkerkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---k*reiiigytmglrenkkv*kknkk**kikkk*kkkllklsfyflvllls*c*gvsl
plxxallssssdnlelh*rcsssilrvnpshsyatlsnv*avfnkkkylkkkkkrkkkni
kiffsksilninnnvffffikkrkkkr


Frame B:
---nkgk***aipwdlekikkfkkkiknnkk*kknkkknf*nspstfwcfc*ANAKVSLS
PFXLHYSPQAQIISSSTNDAPQVSSGLIHHIPMQLSQMYKQSLTKKNI*kkkkkekkkil
kyffqnqf*i*iimffffl*kkerkk


Frame C:
---ikgnnnrlyhgt*rk*kslkkk*kiiknkkkikkktfktllllfgasvklmlrclsp
plxcitllklr*srapltmllkypqg*sitflcnslkcissl*qkkifkkkkkkkkkky*
niffkinfkyk**cffffykkkkekk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA585 (VSA585Q) /CSM/VS/VSA5-D/VSA585Q.Seq.d/                        375   e-103
SSM728 (SSM728Q) /CSM/SS/SSM7-B/SSM728Q.Seq.d/                        375   e-103
SSM719 (SSM719Q) /CSM/SS/SSM7-A/SSM719Q.Seq.d/                        375   e-103
SSM276 (SSM276Q) /CSM/SS/SSM2-D/SSM276Q.Seq.d/                        375   e-103
SSM269 (SSM269Q) /CSM/SS/SSM2-C/SSM269Q.Seq.d/                        375   e-103
SSM229 (SSM229Q) /CSM/SS/SSM2-B/SSM229Q.Seq.d/                        375   e-103
SSM165 (SSM165Q) /CSM/SS/SSM1-C/SSM165Q.Seq.d/                        375   e-103
SSL845 (SSL845Q) /CSM/SS/SSL8-B/SSL845Q.Seq.d/                        375   e-103
SSL836 (SSL836Q) /CSM/SS/SSL8-B/SSL836Q.Seq.d/                        375   e-103
SSL768 (SSL768Q) /CSM/SS/SSL7-C/SSL768Q.Seq.d/                        375   e-103
own update 2004. 8.27
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

D16417|D16417.1 Dictyostelium discoideum mRNA.                   375  e-128  3
BI745034|BI745034.1 rk95d06.y1 Meloidogyne javanica egg pAMP1 v6 Chiapelli McCarter Meloidogyne javanica cDNA 5', mRNA sequence.    38  0.007  3
AX461077|AX461077.1 Sequence 6 from Patent WO0198480.             42  0.045  2
CC245494|CC245494.1 CH261-54C11_Sp6.1 CH261 Gallus gallus genomic clone CH261-54C11, DNA sequence.    48  0.091  1
AZ356349|AZ356349.1 1M0097H20F Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0097H20 F, DNA sequence.    48  0.091  1
BH008429|BH008429.1 ef15e10.x1 TO1000 Brassica oleracea genomic clone ef15e10 5', DNA sequence.    36  0.18  2
BH999320|BH999320.1 oeh12f10.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    36  0.22  2
AC084045|AC084045.15 Mus musculus chromosome 1 clone RP23-357A20, WORKING DRAFT SEQUENCE, 7 unordered pieces.    46  0.36  1
AC116978|AC116978.1 Dictyostelium discoideum chromosome 2 map 4846697-4874480 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    34  0.66  3
AC095551|AC095551.7 Rattus norvegicus clone CH230-8B19, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44  1.4  1
dna update 2003. 7.31
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 304,697,131
protein update 2009. 6.13
PSORT 

 psg: 0.89  gvh: 0.38  alm: 0.53  top: 0.37  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal

>> prediction for SSI739 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI739Z
3' end seq. 
>SSI739Z.Seq
----------AAAATAAAGGGAAATAATAATAGGCTATACCATGGGACTTAGAGAAAATA
AAAAAGTTTAAAAAAAAAATAAAAAATAATAAAAAATAAAAAAAAAATAAAAAAAAAAAC
TTTTAAAACTCTCCTTCTACTTTTTGGTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTC
TCCCCCTTTGNNTTGCATTACTCTCCTCAAGCTCAGATAATCTCGAGCTCCACTAACGAT
GCTCCTCAAGTATCCTCAGGGTTAATCCATCACATTCCTATGCAACTCTCTCAAATGTAT
AAGCAGTCTTTAACAAAAAAAAATATTTAAAAAAAAAAAAAAAAAGAAAAAAAAAAAATA
TTAAAATATTTTTTTCAAAATCAATTTTAAATATAAATAATAATGTTTTTTTTTTTTTTA
TAAAAAAAAGAAAGAAAAAAAGA
Length of 3' end seq. 433
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -