>SSI735 (SSI735Q) /CSM/SS/SSI7-B/SSI735Q.Seq.d/
AAACAATCATAAATAATATTTTAATTAACTTTAAATCAAATATAATGAAAAATCAAACAA
TAATATGAAAAATCAAACAATAATCATTGTCAATTATTATTATTTTTTTACATAAATTTT
TATTTTTTTATTTTTTTATTTTTTTATTTTTTTTAATAATTTTATAGTTTTAGCAGTTAC
AGCAATTGCAAATATAGTTAAAACATCATTTGGACCAATTGGTTTAGATAAAATGTTAAT
TGATAATATTGGATCAATTGTTGTTACCAATGATGGTGCAACCATTTTACAAAAGATTGA
TATAGAACATCCAGCAGCAAAGATTTTAGTACAATTATCAGAATTGCAAGATCAAGAAGT
TGGTGATGGTACAACTACAGTTGTAATTTTAGCAGCAGAATTATTGAAACGTGCCAATGA
ATTGGTAGCACGTAAAGTACATCCAACAGTTATTATTAGTGGTTTTAGATTAGCATGTAC
AGAAGCAATCAAATATATCAACGAAACATTAGCAGTTAAAGTTGAAACCTTACCAAAGGA
TTTCATTGTAAACATTGCCAAGACATCAATGTCATCAAAGACCATCAATGACGATAGTGA
TTTCTTTTCAAAGATTGTCATTGAGGCAATCACTCGTGTGAAAACCATCGATTACAAAGG
TGXXXXXXXXXXTTTAGAGGCTGGTGTTTTAGACCCAGCCTTTGCCAAAATCAAATGTTT
CAAATTTGCAACTGAAAGCGCTATCACCATCCTTCGTATCGATGATAAATTCTCTCTTAA
TCCAAGGGAACAACAAGGTGGTGATCATGAAGGTCATGGACATTAAAAAAAAAAAAAAAA
ATAAAAAAATAAAAAAAAAAAAAAATAAAAAATAATATGATAACAAAAAAAAAAAAAAAT
AATAAAAAAAAAATAAAAAAAAAAAATTAAATAAATAAAAAAATAAACATAACTATCTAT
ACCATTTTTTATTAAAAAAAAAAAA

nnhk*yfn*l*ikyneksnnnmknqtiiivnyyyfft*IFIFLFFYFFIFFNNFIVLAVT
AIANIVKTSFGPIGLDKMLIDNIGSIVVTNDGATILQKIDIEHPAAKILVQLSELQDQEV
GDGTTTVVILAAELLKRANELVARKVHPTVIISGFRLACTEAIKYINETLAVKVETLPKD
FIVNIAKTSMSSKTINDDSDFFSKIVIEAITRVKTIDYKG---

---LEAGVLDPAFAKIKCFKFATESAITILRIDDKFSLNPREQQGGDHEGHGH*kkkkk*
knkkkkk*kii**qkkkkiikkk*kkkik*ikk*t*lsipffikkkk

Frame A:
kqs*iif*ltlnqi**kikq*yeksnnnhcqlllffyinfyffiflffyff**fysfssy
snckys*niiwtnwfr*nvn**ywinccyq*wcnhftkd*yrtssskdfstiiriarsrs
w*wynyscnfssriietcq*igst*stsnsyy*wf*ismyrsnqiyqrniss*s*nltkg
fhckhcqdinvikdhq*r**flfkdch*gnhscenhrlqr---

---frgwcfrpslcqnqmfqicn*kryhhpsyr**ils*skgttrw*s*rswtlkkkkki
kk*kkkkiknnmitkkkknnkkkikkkn*inkkinitiytify*kkk

Frame B:
nnhk*yfn*l*ikyneksnnnmknqtiiivnyyyfft*IFIFLFFYFFIFFNNFIVLAVT
AIANIVKTSFGPIGLDKMLIDNIGSIVVTNDGATILQKIDIEHPAAKILVQLSELQDQEV
GDGTTTVVILAAELLKRANELVARKVHPTVIISGFRLACTEAIKYINETLAVKVETLPKD
FIVNIAKTSMSSKTINDDSDFFSKIVIEAITRVKTIDYKG---

---LEAGVLDPAFAKIKCFKFATESAITILRIDDKFSLNPREQQGGDHEGHGH*kkkkk*
knkkkkk*kii**qkkkkiikkk*kkkik*ikk*t*lsipffikkkk

Frame C:
tiinnilinfksnimknqtii*kikq*slsiiiiflhkflffyffiflffliil*f*qlq
qlqi*lkhhldqlv*ikc*liildqlllpmmvqpfykrli*niqqqrf*ynyqnckikkl
vmvqlql*f*qqny*nvpmnw*hvkyiqqlllvvld*hvqkqsnistkh*qlklkpyqri
sl*tlprhqchqrpsmtivisfqrlslrqslv*kpsitkv---

---*rlvf*tqplpksnvsnlqlkalspsfvsminslliqgnnkvvimkvmdikkkkknk
kikkkknkk*ydnkkkkk**kknkkkklnk*knkhnylyhfllkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI735 (SSI735Q) /CSM/SS/SSI7-B/SSI735Q.Seq.d/                       1269   0.0
FC-AG03 (FC-AG03Q) /CSM/FC/FC-AG/FC-AG03Q.Seq.d/                      983   0.0
FC-116 (FC-116Q) /CSM/CG/CG-FC/FC-116Q.Seq.d/                         983   0.0
AHI886 (AHI886Q) /CSM/AH/AHI8-D/AHI886Q.Seq.d/                        983   0.0
AFF451 (AFF451Q) /CSM/AF/AFF4-C/AFF451Q.Seq.d/                        983   0.0
VFF578 (VFF578Q) /CSM/VF/VFF5-D/VFF578Q.Seq.d/                        955   0.0
AFD439 (AFD439Q) /CSM/AF/AFD4-B/AFD439Q.Seq.d/                        950   0.0
VFD589 (VFD589Q) /CSM/VF/VFD5-D/VFD589Q.Seq.d/                        944   0.0
CFH434 (CFH434Q) /CSM/CF/CFH4-B/CFH434Q.Seq.d/                        920   0.0
VFI330 (VFI330Q) /CSM/VF/VFI3-B/VFI330Q.Seq.d/                        910   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AB008158|AB008158.1 Dictyostelium discoideum DdTcp-1 mRNA for t-complex polypeptide 1 homologue, complete cds.   983  0.0  2
AZ530054|AZ530054.1 ENTDW96TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    66  4e-15  2
AZ526360|AZ526360.1 254PbF04 Pb MBN #21 Plasmodium berghei genomic 3', DNA sequence.    70  2e-13  2
AZ522254|AZ522254.1 204PbE04 Pb MBN #21 Plasmodium berghei genomic 3', DNA sequence.    68  7e-13  2
BF298951|BF298951.1 068PbG10 Pb cDNA #20, Charles Yowell and Jane Carlton Plasmodium berghei cDNA 5', mRNA sequence.    68  7e-13  2
BF299139|BF299139.1 069PbF12 Pb cDNA #20, Charles Yowell and Jane Carlton Plasmodium berghei cDNA 5', mRNA sequence.    68  7e-13  2
AL437502|AL437502.1 T3 end of clone BC0AA009G02 of library BC0AA from strain CBS 767 of Debaryomyces hansenii.    48  1e-10  4
AA550135|AA550135.1 1237m3 gmbPfHB3.1, G. Roman Reddy Plasmodium falciparum genomic clone 1237m, mRNA sequence.    60  6e-06  2
BP134604|BP134604.1 Nicotiana tabacum cDNA, clone: BY7020, primer: M13 forward, sequence 1.    44  2e-05  2
N97951|N97951.1 1712C3 czapPFDd2.1, Debopam Chakrabarti Plasmodium falciparum cDNA clone PF1712C, mRNA sequence.    60  5e-05  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB008158_1(AB008158|pid:none) Dictyostelium discoideum DdTcp-1 m...   310   6e-83
AF442545_1(AF442545|pid:none) Physarum polycephalum CCT chaperon...   238   3e-61
AC152752_1(AC152752|pid:none) Medicago truncatula clone mth2-89c...   221   3e-56
EU965648_1(EU965648|pid:none) Zea mays clone 287725 T-complex pr...   221   3e-56
(P12612) RecName: Full=T-complex protein 1 subunit alpha;       ...   214   3e-54
M21160_1(M21160|pid:none) Yeast (S.cerevisiae) T complex protein...   214   3e-54
CR382139_608(CR382139|pid:none) Debaryomyces hansenii strain CBS...   213   6e-54
AB194475_1(AB194475|pid:none) Delia antiqua DaTCP-1 mRNA for T-c...   213   6e-54
AP000383_4(AP000383|pid:none) Arabidopsis thaliana genomic DNA, ...   213   8e-54
BT002052_1(BT002052|pid:none) Arabidopsis thaliana t-complex pol...   213   8e-54

 psg: 1.01  gvh: 0.45  alm: 0.24  top: 0.47  tms: 0.07  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: plasma membrane
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSI735 is end

>SSI735F.Seq
AAACAATCATAAATAATATTTTAATTAACTTTAAATCAAATATAATGAAAAATCAAACAA
TAATATGAAAAATCAAACAATAATCATTGTCAATTATTATTATTTTTTTACATAAATTTT
TATTTTTTTATTTTTTTATTTTTTTATTTTTTTTAATAATTTTATAGTTTTAGCAGTTAC
AGCAATTGCAAATATAGTTAAAACATCATTTGGACCAATTGGTTTAGATAAAATGTTAAT
TGATAATATTGGATCAATTGTTGTTACCAATGATGGTGCAACCATTTTACAAAAGATTGA
TATAGAACATCCAGCAGCAAAGATTTTAGTACAATTATCAGAATTGCAAGATCAAGAAGT
TGGTGATGGTACAACTACAGTTGTAATTTTAGCAGCAGAATTATTGAAACGTGCCAATGA
ATTGGTAGCACGTAAAGTACATCCAACAGTTATTATTAGTGGTTTTAGATTAGCATGTAC
AGAAGCAATCAAATATATCAACGAAACATTAGCAGTTAAAGTTGAAACCTTACCAAAGGA
TTTCATTGTAAACATTGCCAAGACATCAATGTCATCAAAGACCATCAATGACGATAGTGA
TTTCTTTTCAAAGATTGTCATTGAGGCAATCACTCGTGTGAAAACCATCGATTACAAAGG
TG----------

>SSI735Z.Seq
----------TTTAGAGGCTGGTGTTTTAGACCCAGCCTTTGCCAAAATCAAATGTTTCA
AATTTGCAACTGAAAGCGCTATCACCATCCTTCGTATCGATGATAAATTCTCTCTTAATC
CAAGGGAACAACAAGGTGGTGATCATGAAGGTCATGGACATTAAAAAAAAAAAAAAAAAT
AAAAAAATAAAAAAAAAAAAAAATAAAAAATAATATGATAACAAAAAAAAAAAAAAATAA
TAAAAAAAAAATAAAAAAAAAAAATTAAATAAATAAAAAAATAAACATAACTATCTATAC
CATTTTTTATTAAAAAAAAAAAA

>SSI735P.Seq
AAACAATCATAAATAATATTTTAATTAACTTTAAATCAAATATAATGAAAAATCAAACAA
TAATATGAAAAATCAAACAATAATCATTGTCAATTATTATTATTTTTTTACATAAATTTT
TATTTTTTTATTTTTTTATTTTTTTATTTTTTTTAATAATTTTATAGTTTTAGCAGTTAC
AGCAATTGCAAATATAGTTAAAACATCATTTGGACCAATTGGTTTAGATAAAATGTTAAT
TGATAATATTGGATCAATTGTTGTTACCAATGATGGTGCAACCATTTTACAAAAGATTGA
TATAGAACATCCAGCAGCAAAGATTTTAGTACAATTATCAGAATTGCAAGATCAAGAAGT
TGGTGATGGTACAACTACAGTTGTAATTTTAGCAGCAGAATTATTGAAACGTGCCAATGA
ATTGGTAGCACGTAAAGTACATCCAACAGTTATTATTAGTGGTTTTAGATTAGCATGTAC
AGAAGCAATCAAATATATCAACGAAACATTAGCAGTTAAAGTTGAAACCTTACCAAAGGA
TTTCATTGTAAACATTGCCAAGACATCAATGTCATCAAAGACCATCAATGACGATAGTGA
TTTCTTTTCAAAGATTGTCATTGAGGCAATCACTCGTGTGAAAACCATCGATTACAAAGG
TG----------TTTAGAGGCTGGTGTTTTAGACCCAGCCTTTGCCAAAATCAAATGTTT
CAAATTTGCAACTGAAAGCGCTATCACCATCCTTCGTATCGATGATAAATTCTCTCTTAA
TCCAAGGGAACAACAAGGTGGTGATCATGAAGGTCATGGACATTAAAAAAAAAAAAAAAA
ATAAAAAAATAAAAAAAAAAAAAAATAAAAAATAATATGATAACAAAAAAAAAAAAAAAT
AATAAAAAAAAAATAAAAAAAAAAAATTAAATAAATAAAAAAATAAACATAACTATCTAT
ACCATTTTTTATTAAAAAAAAAAAA