>SSI731 (SSI731Q) /CSM/SS/SSI7-B/SSI731Q.Seq.d/
XXXXXXXXXXCGATGTTGATAGTTTCGCAAGTCCATCAGTTTTAAAATTAATAGTTGGTA
ATAAATGTGATCTCAATTCAAAGGGAGCCGTTGATTTTAAGATTGCAAAGAAATTTGCAG
ATGAATTAAATATCCCAATAATGGAAACTAGCGCAAAAGAATCAACCGCAATTGATGAAG
CATTCATTAAATTAGCTTCTGACATTAAAAAGAGTACTCCACAAAAATAAAAACTTTTTT
AAAAAAAATCAAACAAACAAAAAATCAAACAAAACAGTTAATAACAAATAACAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAACAAAAAAACAAAAAACAATATAA
AATAACAAAATAACTTAATAAAAATTAATAATATCATTTGTTTTTATTTTTTATTAAATA
AAAAAAAAAAAAT

---DVDSFASPSVLKLIVGNKCDLNSKGAVDFKIAKKFADELNIPIMETSAKESTAIDEA
FIKLASDIKKSTPQK*klf*kksnkqkikqns**qitkkkkkkkkknkkkknkktknnik
*qnnlikinniicfyfllnkkkk

Frame A:
---DVDSFASPSVLKLIVGNKCDLNSKGAVDFKIAKKFADELNIPIMETSAKESTAIDEA
FIKLASDIKKSTPQK*klf*kksnkqkikqns**qitkkkkkkkkknkkkknkktknnik
*qnnlikinniicfyfllnkkkk


Frame B:
---mlivsqvhqf*n**lvinvisiqreplilrlqrnlqmn*isq*wklaqknqpqlmkh
sln*lltlkrvlhknknffkknqtnkksnktvnnk*qkkkkkkkkktkkkktkkqkti*n
nkit**kliisfvfify*ikkkk


Frame C:
---c**frksisfkinsw**m*sqfkgsr*f*dckeicr*ikypnngn*rkrinrn**si
h*isf*h*keystkiktflkkikqtknqtkqlitnnkkkkkkkkkkqkkkkqknkkqyki
tk*lnkn**yhlflffik*kkkn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI731 (SSI731Q) /CSM/SS/SSI7-B/SSI731Q.Seq.d/                        420   e-117
SSM526 (SSM526Q) /CSM/SS/SSM5-B/SSM526Q.Seq.d/                        389   e-107
SSK733 (SSK733Q) /CSM/SS/SSK7-B/SSK733Q.Seq.d/                        389   e-107
SSI803 (SSI803Q) /CSM/SS/SSI8-A/SSI803Q.Seq.d/                        389   e-107
SSF625 (SSF625Q) /CSM/SS/SSF6-B/SSF625Q.Seq.d/                        389   e-107
SSE658 (SSE658Q) /CSM/SS/SSE6-C/SSE658Q.Seq.d/                        389   e-107
SSC890 (SSC890Q) /CSM/SS/SSC8-D/SSC890Q.Seq.d/                        389   e-107
SSC149 (SSC149Q) /CSM/SS/SSC1-C/SSC149Q.Seq.d/                        363   1e-99
SSD235 (SSD235Q) /CSM/SS/SSD2-B/SSD235Q.Seq.d/                        139   4e-32
SSB250 (SSB250Q) /CSM/SS/SSB2-C/SSB250Q.Seq.d/                        137   2e-31

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AB015237|AB015237.1 Dictyostelium discoideum Rab1C mRNA, complete cds.   389  e-107  2
CA854796|CA854796.1 PfESToac13h05.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5', mRNA sequence.    40  0.045  2
AC128013|AC128013.3 Rattus norvegicus clone CH230-481G12, WORKING DRAFT SEQUENCE, 1 ordered piece.    48  0.089  1
AC131368|AC131368.3 Rattus norvegicus clone CH230-123J22, WORKING DRAFT SEQUENCE, 1 ordered piece.    48  0.089  1
BZ668339|BZ668339.1 PUBJV33TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa071F18, DNA sequence.    42  0.18  2
AC137342|AC137342.1 Rattus norvegicus clone CH230-unknown, WORKING DRAFT SEQUENCE, 1 ordered piece.    46  0.35  1
AC122394|AC122394.3 Mus musculus chromosome UNK clone RP24-85N8, WORKING DRAFT SEQUENCE, 9 unordered pieces.    46  0.35  1
BZ157456|BZ157456.1 CH230-432J22.TV CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-432J22, DNA sequence.    46  0.35  1
AC096459|AC096459.6 Rattus norvegicus clone CH230-147D4, WORKING DRAFT SEQUENCE, 1 ordered piece.    46  0.35  1
AC134740|AC134740.2 Rattus norvegicus clone CH230-81D7, WORKING DRAFT SEQUENCE, 2 unordered pieces.    46  0.35  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O76173) RecName: Full=Ras-related protein Rab-1C;  &AB015237_1(...   132   5e-30
(Q1ZXE7) RecName: Full=Ras-related protein RabZ;                       83   3e-15
DQ414556_1(DQ414556|pid:none) Suberites domuncula Rab1 gene, com...    82   4e-15
AC159407_36(AC159407|pid:none) Trypanosoma brucei chromosome 8 c...    82   4e-15
AM494964_85(AM494964|pid:none) Leishmania braziliensis chromosom...    82   6e-15
DQ372931_1(DQ372931|pid:none) Pinus pinaster Rab1 mRNA, complete...    81   1e-14
(P22125) RecName: Full=Ras-related protein ORAB-1;  &M38393_1(M3...    81   1e-14
BT059700_1(BT059700|pid:none) Salmo salar clone ssal-rgf-002-342...    81   1e-14
BC045014_1(BC045014|pid:none) Xenopus laevis RAB1, member RAS on...    81   1e-14
BC097013_1(BC097013|pid:none) Danio rerio zgc:86773, mRNA (cDNA ...    80   2e-14

 psg: 0.75  gvh: 0.35  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.09  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SSI731 is nuc

>SSI731Z.Seq
----------CGATGTTGATAGTTTCGCAAGTCCATCAGTTTTAAAATTAATAGTTGGTA
ATAAATGTGATCTCAATTCAAAGGGAGCCGTTGATTTTAAGATTGCAAAGAAATTTGCAG
ATGAATTAAATATCCCAATAATGGAAACTAGCGCAAAAGAATCAACCGCAATTGATGAAG
CATTCATTAAATTAGCTTCTGACATTAAAAAGAGTACTCCACAAAAATAAAAACTTTTTT
AAAAAAAATCAAACAAACAAAAAATCAAACAAAACAGTTAATAACAAATAACAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAACAAAAAAACAAAAAACAATATAA
AATAACAAAATAACTTAATAAAAATTAATAATATCATTTGTTTTTATTTTTTATTAAATA
AAAAAAAAAAAAT