SSI723
Library SS
(Link to library)
Clone ID SSI723
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U05482-1
Original site URL
Representative seq. ID SSI723E
(Link to Original site)
Representative DNA sequence
>SSI723 (SSI723Q) /CSM/SS/SSI7-A/SSI723Q.Seq.d/
AAAAAAATAAAATAAAAAAAAGAAATCAAAAATGAATTGCCCAATATTTTTATGGAGAAT
TTATAAATATATAGTGCATTTATTTACAGGAAGATCAGAAATTGAAAGAATATGTTACAA
TATTGAATTAAAATCATTAGATAGATTAGCGTTAATTGAAACTAGTGTAGACTATTCAAA
ACAACTTGTTCATATAAAAAAAGATATGAAATCAGAATTTGATCCAGGTGATGTTGCAAT
TAAAATAGTAGAAATTAAAGGTTTTAATCAAGAATTATTAGCATTTGATTCAATAATTTT
ACCAAATTTAATATCAGCATTGGAACCAATTAGTTTATTCCAAGGATTAAAGAAATCAAT
AGAAAAAAAACAAAAGATACCATATGATAATAATAATCTTGAGCATGAGGCATCATTAGA
GAGATTATGGGAGGCATTATTACCAGATGTTAGAAGATCTGCTAGATTATCTAAAGAATG
GGGCACTTTAGGATTTCAAGGTATGGATCCAGCTACTGATTTTAGAGGTATGGGTATATT
GGGTTTAGACAATTTAATTTATTTTTCTACTCAACATTCTGAAGATGCAAGAGAAATTTT
AAAAAATTCAAATTCAAAATGTTGTTATCCATTTGCAATTACTGGTATCAATATTACTGC
ATTAGTTTTAAATTTAATTGATAAACCTCATTTTAAAATTTACTTTTTTAAAAATGGTTC
CACTCTTACTCAATTTAATGAACTTTATTCTCTAGTATTTATATCATTTGACAGATTTTA
CCAAAGTAAAAAACCAAAATCAATTATGGAGTTTAATACAATTAAAAAAGAATTTGAAAC
AAAAATTAGTCAAAATTCTGATCTTGTTCAACTATTACGTAATTAAAAAGAAAGATAGA
sequence update 1999. 6.22
Translated Amino Acid sequence
kk*NKKKKSKMNCPIFLWRIYKYIVHLFTGRSEIERICYNIELKSLDRLALIETSVDYSK
QLVHIKKDMKSEFDPGDVAIKIVEIKGFNQELLAFDSIILPNLISALEPISLFQGLKKSI
EKKQKIPYDNNNLEHEASLERLWEALLPDVRRSARLSKEWGTLGFQGMDPATDFRGMGIL
GLDNLIYFSTQHSEDAREILKNSNSKCCYPFAITGINITALVLNLIDKPHFKIYFFKNGS
TLTQFNELYSLVFISFDRFYQSKKPKSIMEFNTIKKEFETKISQNSDLVQLLRN*ker*


Translated Amino Acid sequence (All Frames)
Frame A:
kkik*kkeiknelpnifmenl*iysafiyrkirn*knmlqy*ikiir*isvn*n*crlfk
ttcsykkryeiri*sr*ccn*nsrn*rf*sriisi*fnnftkfnisigtn*fiprikein
rkktkdti****s*a*giireimggiitrc*kic*ii*rmghfrisrygssy*f*rygyi
gfrqfnlffystf*rckrnfkkfkfkmllsicnywyqyycisfkfn**tsf*nllf*kwf
hsysi**tlfssiyii*qilpk*ktkinygv*yn*kri*nkn*skf*scstit*lkrki


Frame B:
kk*NKKKKSKMNCPIFLWRIYKYIVHLFTGRSEIERICYNIELKSLDRLALIETSVDYSK
QLVHIKKDMKSEFDPGDVAIKIVEIKGFNQELLAFDSIILPNLISALEPISLFQGLKKSI
EKKQKIPYDNNNLEHEASLERLWEALLPDVRRSARLSKEWGTLGFQGMDPATDFRGMGIL
GLDNLIYFSTQHSEDAREILKNSNSKCCYPFAITGINITALVLNLIDKPHFKIYFFKNGS
TLTQFNELYSLVFISFDRFYQSKKPKSIMEFNTIKKEFETKISQNSDLVQLLRN*ker*


Frame C:
knkikkrnqk*iaqyfygefini*ciylqedqklkeyvtiln*nh*id*r*lklv*tiqn
nlfi*kki*nqnliqvmlqlk**klkvlikny*hliq*fyqi*yqhwnqlvyskd*rnq*
kknkryhmiiiilsmrhh*rdygrhyyqmledlldylkngal*dfkvwiqllilevwvyw
v*ti*fifllnilkmqekf*kiqiqnvvihlqllvsillh*f*i*linlilkftflkmvp
lllnlmnfil*ylyhltdftkvknqnqlwsliqlkknlkqklvkililfnyyvikkkdr


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSI723 (SSI723Q) /CSM/SS/SSI7-A/SSI723Q.Seq.d/ 1405 0.0
VSJ272 (VSJ272Q) /CSM/VS/VSJ2-C/VSJ272Q.Seq.d/ 46 0.001
VSA448 (VSA448Q) /CSM/VS/VSA4-B/VSA448Q.Seq.d/ 46 0.001
SSM347 (SSM347Q) /CSM/SS/SSM3-B/SSM347Q.Seq.d/ 46 0.001
CHQ606 (CHQ606Q) /CSM/CH/CHQ6-A/CHQ606Q.Seq.d/ 46 0.001
VHI716 (VHI716Q) /CSM/VH/VHI7-A/VHI716Q.Seq.d/ 42 0.014
SLH656 (SLH656Q) /CSM/SL/SLH6-C/SLH656Q.Seq.d/ 42 0.014
SLG613 (SLG613Q) /CSM/SL/SLG6-A/SLG613Q.Seq.d/ 42 0.014
SLC361 (SLC361Q) /CSM/SL/SLC3-C/SLC361Q.Seq.d/ 42 0.014
VSI730 (VSI730Q) /CSM/VS/VSI7-B/VSI730Q.Seq.d/ 40 0.057

own update 2002.12.13
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 38 9e-05 13
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 40 6e-04 9
BH006677|BH006677.1 BMBAC11J12SP6_PSU Brugia malayi Genomic Bac Library 1 & 2 Brugia malayi genomic, DNA sequence. 32 0.002 4
BH006667|BH006667.1 BMBAC11J07SP6_PSU Brugia malayi Genomic Bac Library 1 & 2 Brugia malayi genomic, DNA sequence. 32 0.002 4
BH006385|BH006385.1 BMBAC11C06SP6_PSU Brugia malayi Genomic Bac Library 1 & 2 Brugia malayi genomic, DNA sequence. 32 0.003 4
BH006845|BH006845.1 BMBAC11N05T7_PSU Brugia malayi Genomic Bac Library 1 & 2 Brugia malayi genomic, DNA sequence. 38 0.003 3
BH003183|BH003183.2 BMBAC04B12T7_PSU Brugia malayi Genomic Bac Library 1 & 2 Brugia malayi genomic, DNA sequence. 32 0.004 4
BH006801|BH006801.1 BMBAC11M06SP6_PSU Brugia malayi Genomic Bac Library 1 & 2 Brugia malayi genomic, DNA sequence. 38 0.004 3
BH005294|BH005294.2 BMBAC09G10T7_PSU Brugia malayi Genomic Bac Library 1 & 2 Brugia malayi genomic, DNA sequence. 32 0.005 4
BH006601|BH006601.1 BMBAC11H18SP6_PSU Brugia malayi Genomic Bac Library 1 & 2 Brugia malayi genomic, DNA sequence. 38 0.005 3
dna update 2003. 9. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54VR8) RecName: Full=ELMO domain-containing protein B; 569 e-161
AL935166_3(AL935166|pid:none) Zebrafish DNA sequence from clone ... 167 4e-40
(Q08DZ3) RecName: Full=ELMO domain-containing protein 2; &BC123... 165 2e-39
(Q5NVD7) RecName: Full=ELMO domain-containing protein 1; &CR926... 161 2e-38
AK132239_1(AK132239|pid:none) Mus musculus adult male brain cDNA... 160 7e-38
(Q8IZ81) RecName: Full=ELMO domain-containing protein 2; &AK312... 159 9e-38
BC118679_1(BC118679|pid:none) Danio rerio ELMO/CED-12 domain con... 159 1e-37
(Q0IIE6) RecName: Full=ELMO domain-containing protein 1; &BC122... 158 3e-37
AE014297_570(AE014297|pid:none) Drosophila melanogaster chromoso... 156 8e-37
(Q8N336) RecName: Full=ELMO domain-containing protein 1; &BC028... 155 2e-36
protein update 2009. 7. 8
PSORT

psg: 0.88 gvh: 0.41 alm: 0.33 top: 0.33 tms: 0.00 mit: 0.34 mip: 0.06
nuc: 0.07 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SSI723 is nuc

5' end seq. ID SSI723F
5' end seq.
>SSI723F.Seq
AAAAAAATAAAATAAAAAAAAGAAATCAAAAATGAATTGCCCAATATTTTTATGGAGAAT
TTATAAATATATAGTGCATTTATTTACAGGAAGATCAGAAATTGAAAGAATATGTTACAA
TATTGAATTAAAATCATTAGATAGATTAGCGTTAATTGAAACTAGTGTAGACTATTCAAA
ACAACTTGTTCATATAAAAAAAGATATGAAATCAGAATTTGATCCAGGTGATGTTGCAAT
TAAAATAGTAGAAATTAAAGGTTTTAATCAAGAATTATTAGCATTTGATTCAATAATTTT
ACCAAATTTAATATCAGCATTGGAACCAATTAGTTTATTCCAAGGATTAAAGAAATCAAT
AGAAAAAAAACAAAAGATACCATATGATAATAATAATCTTGAGCATGAGGCATCATTAGA
GAGATTATGGGAGGCATTATTACCAGATGTTAGAAGATCTGCTAGATTATCTAAAGAATG
GGGCACTTTAGGATTTCAAGGTATGGATCCAGCTACTGATTTTAGAGGTATGGGTATATT
GGGTTTAGACAATTTAATTTATTTTTCTACTCAACATTCTGAAGATGCAAGAGAAATTTT
AAAAAATTCAAATTCAAAATGTTGTTATCCATTTGCAATTACTGGTATCAATATTACTGC
ATTAGTTTTAAATTTAATTGATAAACCTCATTTTAAAATTTACTTTTTTAAAAATGGTTC
C----------
Length of 5' end seq. 721
3' end seq. ID SSI723Z
3' end seq.
>SSI723Z.Seq
----------TTAATCAAGAATTATTAGCATTTGATTCAATAATTTTACCAAATTTAATA
TCAGCATTGGAACCAATTAGTTTATTCCAAGGATTAAAGAAATCAATAGAAAAAAAACAA
AAGATACCATATGATAATAATAATCTTGAGCATGAGGCATCATTAGAGAGATTATGGGAG
GCATTATTACCAGATGTTAGAAGATCTGCTAGATTATCTAAAGAATGGGGCACTTTAGGA
TTTCAAGGTATGGATCCAGCTACTGATTTTAGAGGTATGGGTATATTGGGTTTAGACAAT
TTAATTTATTTTTCTACTCAACATTCTGAAGATGCAAGAGAAATTTTAAAAAATTCAAAT
TCAAAATGTTGTTATCCATTTGCAATTACTGGTATCAATATTACTGCATTAGTTTTAAAT
TTAATTGATAAACCTCATTTTAAAATTTACTTTTTTAAAAATGGTTCCACTCTTACTCAA
TTTAATGAACTTTATTCTCTAGTATTTATATCATTTGACAGATTTTACCAAAGTAAAAAA
CCAAAATCAATTATGGAGTTTAATACAATTAAAAAAGAATTTGAAACAAAAATTAGTCAA
AATTCTGATCTTGTTCAACTATTACGTAATTAAAAAGAAAGATAGA
Length of 3' end seq. 636
Connected seq. ID SSI723P
Connected seq.
>SSI723P.Seq
AAAAAAATAAAATAAAAAAAAGAAATCAAAAATGAATTGCCCAATATTTTTATGGAGAAT
TTATAAATATATAGTGCATTTATTTACAGGAAGATCAGAAATTGAAAGAATATGTTACAA
TATTGAATTAAAATCATTAGATAGATTAGCGTTAATTGAAACTAGTGTAGACTATTCAAA
ACAACTTGTTCATATAAAAAAAGATATGAAATCAGAATTTGATCCAGGTGATGTTGCAAT
TAAAATAGTAGAAATTAAAGGTTTTAATCAAGAATTATTAGCATTTGATTCAATAATTTT
ACCAAATTTAATATCAGCATTGGAACCAATTAGTTTATTCCAAGGATTAAAGAAATCAAT
AGAAAAAAAACAAAAGATACCATATGATAATAATAATCTTGAGCATGAGGCATCATTAGA
GAGATTATGGGAGGCATTATTACCAGATGTTAGAAGATCTGCTAGATTATCTAAAGAATG
GGGCACTTTAGGATTTCAAGGTATGGATCCAGCTACTGATTTTAGAGGTATGGGTATATT
GGGTTTAGACAATTTAATTTATTTTTCTACTCAACATTCTGAAGATGCAAGAGAAATTTT
AAAAAATTCAAATTCAAAATGTTGTTATCCATTTGCAATTACTGGTATCAATATTACTGC
ATTAGTTTTAAATTTAATTGATAAACCTCATTTTAAAATTTACTTTTTTAAAAATGGTTC
C----------TTAATCAAGAATTATTAGCATTTGATTCAATAATTTTACCAAATTTAAT
ATCAGCATTGGAACCAATTAGTTTATTCCAAGGATTAAAGAAATCAATAGAAAAAAAACA
AAAGATACCATATGATAATAATAATCTTGAGCATGAGGCATCATTAGAGAGATTATGGGA
GGCATTATTACCAGATGTTAGAAGATCTGCTAGATTATCTAAAGAATGGGGCACTTTAGG
ATTTCAAGGTATGGATCCAGCTACTGATTTTAGAGGTATGGGTATATTGGGTTTAGACAA
TTTAATTTATTTTTCTACTCAACATTCTGAAGATGCAAGAGAAATTTTAAAAAATTCAAA
TTCAAAATGTTGTTATCCATTTGCAATTACTGGTATCAATATTACTGCATTAGTTTTAAA
TTTAATTGATAAACCTCATTTTAAAATTTACTTTTTTAAAAATGGTTCCACTCTTACTCA
ATTTAATGAACTTTATTCTCTAGTATTTATATCATTTGACAGATTTTACCAAAGTAAAAA
ACCAAAATCAATTATGGAGTTTAATACAATTAAAAAAGAATTTGAAACAAAAATTAGTCA
AAATTCTGATCTTGTTCAACTATTACGTAATTAAAAAGAAAGATAGA
Length of connected seq. 1357
Full length Seq ID SSI723E
Full length Seq.
>SSI723E.Seq
AAAAAAATAAAATAAAAAAAAGAAATCAAAAATGAATTGCCCAATATTTTTATGGAGAAT
TTATAAATATATAGTGCATTTATTTACAGGAAGATCAGAAATTGAAAGAATATGTTACAA
TATTGAATTAAAATCATTAGATAGATTAGCGTTAATTGAAACTAGTGTAGACTATTCAAA
ACAACTTGTTCATATAAAAAAAGATATGAAATCAGAATTTGATCCAGGTGATGTTGCAAT
TAAAATAGTAGAAATTAAAGGTTTTAATCAAGAATTATTAGCATTTGATTCAATAATTTT
ACCAAATTTAATATCAGCATTGGAACCAATTAGTTTATTCCAAGGATTAAAGAAATCAAT
AGAAAAAAAACAAAAGATACCATATGATAATAATAATCTTGAGCATGAGGCATCATTAGA
GAGATTATGGGAGGCATTATTACCAGATGTTAGAAGATCTGCTAGATTATCTAAAGAATG
GGGCACTTTAGGATTTCAAGGTATGGATCCAGCTACTGATTTTAGAGGTATGGGTATATT
GGGTTTAGACAATTTAATTTATTTTTCTACTCAACATTCTGAAGATGCAAGAGAAATTTT
AAAAAATTCAAATTCAAAATGTTGTTATCCATTTGCAATTACTGGTATCAATATTACTGC
ATTAGTTTTAAATTTAATTGATAAACCTCATTTTAAAATTTACTTTTTTAAAAATGGTTC
CACTCTTACTCAATTTAATGAACTTTATTCTCTAGTATTTATATCATTTGACAGATTTTA
CCAAAGTAAAAAACCAAAATCAATTATGGAGTTTAATACAATTAAAAAAGAATTTGAAAC
AAAAATTAGTCAAAATTCTGATCTTGTTCAACTATTACGTAATTAAAAAGAAAGATAGA
Length of full length seq. 899