SSI720
Library SS
(Link to library)
Clone ID SSI720
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U07980-1
Original site URL
Representative seq. ID SSI720Z
(Link to Original site)
Representative DNA sequence
>SSI720 (SSI720Q) /CSM/SS/SSI7-A/SSI720Q.Seq.d/
XXXXXXXXXXGCTATGATTATCTAATAATAAACCTTTACAATTACAAGGATTAGGTACAA
AAACTATAGTGGGACAGGTGTGGTTTAATGCTGTATTAGCTTTACATTCAATTTATTTAA
TTGGTGTAGGTTTCGAATTAATTTCAAGAGCATATCTTATGATGGTTGGTTCAACTTGTT
CAGAACAAAGAAGAGGATTTTTATGTTGTTTTGTATATTCAATGAGTATTTGGTGGAAAT
TAATGATGATTTTAGGTGTTGTTTCATCTATTGTATTATGTGGTTTGACAGCATTAGTGA
TTGTATTAGAAGGATTTGCAAAAATAAAGATTATTCGTTTAGCAGTTACAGATGCAGTAA
CATTGGTTCAATTATTCTTTAGTGTAATATGTTTTGTAACATCAAGAGCCACCCAAAAAA
ATGCAAGATGAAGAAGAGGAAGCACTTCATGGTGTTAAAAAACAAGAACTCCAACCAACT
AATTCTGCTGCATCAACTCCATCTTCTGCTCCACCATGTTATATTGTTGATGAGAAAAAA
GATTCTGCTTCTCCATCTGGTCAATCTAAAGATTCTGAACCTTCAGCAGTTTTACCAGCT
TAAATATTTTTAAAAAATTTTTAAAAATAATAAAAAACAATAATAATAATTTTATAATAC
TAAAAA
sequence update 1998. 1.11
Translated Amino Acid sequence
---l*LSNNKPLQLQGLGTKTIVGQVWFNAVLALHSIYLIGVGFELISRAYLMMVGSTCS
EQRRGFLCCFVYSMSIWWKLMMILGVVSSIVLCGLTALVIVLEGFAKIKIIRLAVTDAVT
LVQLFFSVICFVTSRATQKNAR*rrgstswc*ktrtptn*fccinsifcstmlyc**ekr
fcfsiwsi*rf*tfssftslnifkkflkiiknnnnnfiilk


Translated Amino Acid sequence (All Frames)
Frame A:
---l*LSNNKPLQLQGLGTKTIVGQVWFNAVLALHSIYLIGVGFELISRAYLMMVGSTCS
EQRRGFLCCFVYSMSIWWKLMMILGVVSSIVLCGLTALVIVLEGFAKIKIIRLAVTDAVT
LVQLFFSVICFVTSRATQKNAR*rrgstswc*ktrtptn*fccinsifcstmlyc**ekr
fcfsiwsi*rf*tfssftslnifkkflkiiknnnnnfiilk


Frame B:
---ydyliinlynykd*vqkl*wdrcglmly*lyiqfi*lv*vsn*fqehil*wlvqlvq
nkeedfyvvlyiq*vfggn***f*vlfhllyyvv*qh**ly*kdlqk*rlfv*qlqmq*h
wfnyslv*yvl*hqeppkkmqdeeeealhgvkkqelqptnsaastpssappcyivdekkd
saspsgqskdsepsavlpa*iflknf*k**ktiiiil*y*k


Frame C:
---mii***tftitriryknysgtgvv*ccisftfnlfnwcrfrinfksisydgwfnlfr
tkkrifmlfcifneylveinddfrccfiycimwfdsisdcirricknkdysfssyrcsni
gsiil*cnmfcnikshpkkckmkkrkhfmvlknknsnqlillhqlhlllhhvillmrkki
lllhlvnlkilnlqqfyqlkyf*kifknnkkq***fyntk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSI720 (SSI720Q) /CSM/SS/SSI7-A/SSI720Q.Seq.d/ 1128 0.0
SSL143 (SSL143Q) /CSM/SS/SSL1-B/SSL143Q.Seq.d/ 1102 0.0
SSI872 (SSI872Q) /CSM/SS/SSI8-C/SSI872Q.Seq.d/ 1094 0.0
SSA351 (SSA351Q) /CSM/SS/SSA3-C/SSA351Q.Seq.d/ 1094 0.0
SSF570 (SSF570Q) /CSM/SS/SSF5-C/SSF570Q.Seq.d/ 1082 0.0
SSI669 (SSI669Q) /CSM/SS/SSI6-C/SSI669Q.Seq.d/ 1063 0.0
SSM532 (SSM532Q) /CSM/SS/SSM5-B/SSM532Q.Seq.d/ 1015 0.0
SSM275 (SSM275Q) /CSM/SS/SSM2-D/SSM275Q.Seq.d/ 977 0.0
SSC273 (SSC273Q) /CSM/SS/SSC2-D/SSC273Q.Seq.d/ 874 0.0
SSJ488 (SSJ488Q) /CSM/SS/SSJ4-D/SSJ488Q.Seq.d/ 795 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL158164|AL158164.15 Human DNA sequence from clone RP11-414K1 on chromosome 10. 48 0.14 1
AL929493|AL929493.13 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-157D2. 38 0.14 4
BX322665|BX322665.4 Zebrafish DNA sequence from clone DKEY-183N20 in linkage group 20. 44 0.17 4
AC027366|AC027366.1 Homo sapiens clone RP11-27F17, LOW-PASS SEQUENCE SAMPLING. 48 0.72 2
AC090012|AC090012.8 Homo sapiens 12q BAC RP11-6F20 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 38 0.81 4
AC016640|AC016640.6 Homo sapiens chromosome 5 clone RP11-414A11, WORKING DRAFT SEQUENCE, 86 unordered pieces. 42 0.91 3
AC131757|AC131757.3 Mus musculus chromosome 3 clone RP24-210I7, complete sequence. 38 1.4 2
AC005507|AC005507.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 30 1.5 10
BF273477|BF273477.1 GA__Eb0018C05f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0018C05f, mRNA sequence. 44 2.2 1
AC131469|AC131469.5 Rattus norvegicus clone CH230-193C19, WORKING DRAFT SEQUENCE, 1 ordered piece. 44 2.2 1
dna update 2003. 7.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EU276418_1(EU276418|pid:none) Olive flounder iridovirus strain O... 36 0.87
AE017342_268(AE017342|pid:none) Cryptococcus neoformans var. neo... 36 0.87
GN107049_1(GN107049|pid:none) Sequence 11830 from Patent WO20090... 36 0.87
AB043979_1(AB043979|pid:none) African lampeye iridovirus gene fo... 35 1.9
AY608684_1(AY608684|pid:none) Turbot reddish body iridovirus ade... 35 1.9
AB007367_1(AB007367|pid:none) Red sea bream iridovirus gene for ... 35 1.9
AF371960_123(AF371960|pid:none) Infectious spleen and kidney nec... 35 1.9
CP000764_1144(CP000764|pid:none) Bacillus cereus subsp. cytotoxi... 35 2.5
AL844507_87(AL844507|pid:none) Plasmodium falciparum 3D7 chromos... 35 2.5
AP006050_8(AP006050|pid:none) Oryza sativa Japonica Group genomi... 34 3.3
protein update 2009. 6.13
PSORT

psg: 0.79 gvh: 0.49 alm: 0.17 top: 0.50 tms: 0.20 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

40.0 %: endoplasmic reticulum
20.0 %: mitochondrial
16.0 %: plasma membrane
4.0 %: cytoplasmic
4.0 %: vacuolar
4.0 %: Golgi
4.0 %: nuclear
4.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall

>> prediction for SSI720 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI720Z
3' end seq.
>SSI720Z.Seq
----------GCTATGATTATCTAATAATAAACCTTTACAATTACAAGGATTAGGTACAA
AAACTATAGTGGGACAGGTGTGGTTTAATGCTGTATTAGCTTTACATTCAATTTATTTAA
TTGGTGTAGGTTTCGAATTAATTTCAAGAGCATATCTTATGATGGTTGGTTCAACTTGTT
CAGAACAAAGAAGAGGATTTTTATGTTGTTTTGTATATTCAATGAGTATTTGGTGGAAAT
TAATGATGATTTTAGGTGTTGTTTCATCTATTGTATTATGTGGTTTGACAGCATTAGTGA
TTGTATTAGAAGGATTTGCAAAAATAAAGATTATTCGTTTAGCAGTTACAGATGCAGTAA
CATTGGTTCAATTATTCTTTAGTGTAATATGTTTTGTAACATCAAGAGCCACCCAAAAAA
ATGCAAGATGAAGAAGAGGAAGCACTTCATGGTGTTAAAAAACAAGAACTCCAACCAACT
AATTCTGCTGCATCAACTCCATCTTCTGCTCCACCATGTTATATTGTTGATGAGAAAAAA
GATTCTGCTTCTCCATCTGGTCAATCTAAAGATTCTGAACCTTCAGCAGTTTTACCAGCT
TAAATATTTTTAAAAAATTTTTAAAAATAATAAAAAACAATAATAATAATTTTATAATAC
TAAAAA
Length of 3' end seq. 656
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -