SSI719 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SSI719
Library	SS (Link to library)
Clone ID	SSI719 (Link to dictyBase)
Atlas ID	-
NBRP ID	G00827
dictyBase ID	DDB0218053
Link to Contig	Contig-U05414-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SS/SSI7-A/SSI719Q.Seq.d/
Representative seq. ID	SSI719E (Link to Original site)
Representative DNA sequence	>SSI719 (SSI719Q) /CSM/SS/SSI7-A/SSI719Q.Seq.d/ ATAAAAATAATAATGATAAAGCAATTAACTAAATTAAATATCACAAAACAATTAGCCAAT AATATTGGTAAAAGACAATATTGCTCATACTTTGAAAATAGAAATAATAATTTACCATAT AACACAGATCCAATTGAAAAAGTTGAAGACTCACCAAATACATCATCAAAATATTTCGAT TTATATAATAAACATAAAACATTTGTACCATTTTTTGATAAGAATTCAATTACAACACCA GCAATTACAGGTTTATATCCAAGAGAAGGTGGGGAATTTGTAGCACCATCAGCATCAATT ATTGGTAATGTTAATTTAGGTGTAGGATCATCAGTTTGGGATAACTGTGTTATTAGAGCT TAATTACATTCATATTGGTGCATTTACAAATGTTCAAGATGGTACAATCATTAGAGAAGC CAATGAGCCAATATCATTGGACCACAATGGCAGCACAATCATTGGTGATCAAGTAACAAT TGGTCACAGTTGTATACTTGAAGCATGTACTGTCGAAGAGAATTGTTTGATTGGAATGGG TTCAATTTTGGAACCAGAATCATACGTTGAAGCAAACTCAATTTTAGGTTCAAATTCAAT CTTAACCAAAGGTTCTCGTATTAAATCTGGTGAACTTTGGGTTGGTAAACCAGCTAAATT TGTTAGGTTAGAAATTTAACTGAAAATGAAAAAATCGATATTAGTAATAGTGCTCATTCC TATATGTTAAATGCTGAAAAAGCATTTGAATCTTTTGGTTTAGATAAAGATTCTTTCATC TATATTGATGCTCAACAACAAGGCATTCAAGTTGGTTGGAAAGGTAGTTATTTTTCTGAA TAAAATAAAATAAATTAAAAATAAATTAAATTAAATAAATAATAATAAAAATAAAAATAA ATTTATACCGAAAAAGTTGTAATCAAAAACAAAAAAAAAAAAAAAAAA
sequence update	1999. 4.21
Translated Amino Acid sequence	IKIIMIKQLTKLNITKQLANNIGKRQYCSYFENRNNNLPYNTDPIEKVEDSPNTSSKYFD LYNKHKTFVPFFDKNSITTPAITGLYPREGGEFVAPSASIIGNVNLGVGSSVWDNCVIRA lhsywciykcsrwynhrsqaniigpqwqhnhwssnnwsqlytsmycrrelfdwng fnfgtriirsklnfrfkfnlnqrfsyiwtlgwtsicvrnltenekidisnsahs ymlnaekafesfgldkdsfiyidaqqqgiqvgwkgsyfsenkinkiklnk**kk* iytekvviknkkkkkk
Translated Amino Acid sequence (All Frames)	Frame A: IKIIMIKQLTKLNITKQLANNIGKRQYCSYFENRNNNLPYNTDPIEKVEDSPNTSSKYFD LYNKHKTFVPFFDKNSITTPAITGLYPREGGEFVAPSASIIGNVNLGVGSSVWDNCVIRA lhsywciykcsrwynhrsqaniigpqwqhnhwssnnwsqlytsmycrrelfdwng fnfgtriirsklnfrfkfnlnqrfsyiwtlgwtsicvrnltenekidisnsahs ymlnaekafesfgldkdsfiyidaqqqgiqvgwkgsyfsenkinkiklnk**kk* iytekvviknkkkkkk Frame B: k**snlnisqnnpiilvkdniahtlkieiiiyhitqiqlkklkthqihhqnisi yiinikhlyhfliriqlqhqqlqvyiqekvgnlhhqhqllvmlivdhqfgitvllel nyihigaftnvqdgtiireanepisldhngstiigdqvtighscileactveencligmg silepesyveansilgsnsiltkgsriksgelwvgkpakfvrleilkmkksilvivlip icmlkkhlnllvikilssilmlnnkafklvgkvviflnkikiknklninnnknknk fipkklsktkkkkk Frame C: knnndkainikyhktisqywktillilkk*ftihrsnksrltkyiikifrf i*tnictif*efnyntsnyrfiskrrwgicstisinywcfrcriislglcysl itfilvhlqmfkmvqslekpmsqyhwttmaaqslvikqlvtvvylkhvlskrivlewv qfwnqnhtlkqtqfvqiqspkvlvlnlvnfglvnqlnllgkfnkknry**csfl yvkcksiifwfrrffhlycsttrhsswlerlffiknklkinikiiikikin lyrkscnqkqkkkkk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SSI719 (SSI719Q) /CSM/SS/SSI7-A/SSI719Q.Seq.d/ 1661 0.0 VSJ586 (VSJ586Q) /CSM/VS/VSJ5-D/VSJ586Q.Seq.d/ 1578 0.0 SSI788 (SSI788Q) /CSM/SS/SSI7-D/SSI788Q.Seq.d/ 1156 0.0 VSH367 (VSH367Q) /CSM/VS/VSH3-C/VSH367Q.Seq.d/ 1059 0.0 VSC316 (VSC316Q) /CSM/VS/VSC3-A/VSC316Q.Seq.d/ 1055 0.0 VSD825 (VSD825Q) /CSM/VS/VSD8-B/VSD825Q.Seq.d/ 1003 0.0 SSI158 (SSI158Q) /CSM/SS/SSI1-C/SSI158Q.Seq.d/ 955 0.0 VHL770 (VHL770Q) /CSM/VH/VHL7-C/VHL770Q.Seq.d/ 40 0.060 SSD483 (SSD483Q) /CSM/SS/SSD4-D/SSD483Q.Seq.d/ 40 0.060 SFG519 (SFG519Q) /CSM/SF/SFG5-A/SFG519Q.Seq.d/ 40 0.060
own update	2004. 6. 1
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AF250284\|AF250284.1 Amsacta moorei entomopoxvirus, complete genome. 36 0.019 9 AC022141\|AC022141.4 Homo sapiens chromosome 5 clone CTD-2313D2, WORKING DRAFT SEQUENCE, 12 ordered pieces. 40 0.027 3 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 34 0.028 10 AL954333\|AL954333.7 Zebrafish DNA sequence from clone CH211-287M15. 34 0.038 5 AX344573\|AX344573.1 Sequence 24 from Patent WO0200932. 42 0.045 5 BX072541\|BX072541.1 Mouse DNA sequence from clone RP23-189G9 on chromosome 4. 46 0.048 4 AC117313\|AC117313.3 Rattus norvegicus clone CH230-321D10, * SEQUENCING IN PROGRESS , 3 unordered pieces. 44 0.048 7 AZ394819\|AZ394819.1 1M0158J04R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0158J04 R, DNA sequence. 50 0.052 1 AC008830\|AC008830.7 Homo sapiens chromosome 5 clone CTD-2142G21, complete sequence. 40 0.054 3 AC004688\|AC004688.8 Plasmodium falciparum chromosome 12 clone 3D7, SEQUENCING IN PROGRESS *, 4 unordered pieces. 38 0.055 7
dna update	2003. 9. 8
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AJ876807_1(AJ876807\|pid:none) Acanthamoeba polyphaga partial mRN... 134 8e-42 AF249876_1(AF249876\|pid:none) Arabidopsis thaliana transcription... 92 1e-25 AC025808_34(AC025808\|pid:none) Genomic sequence for Arabidopsis ... 89 1e-25 AC079677_2(AC079677\|pid:none) Arabidopsis thaliana chromosome 1 ... 92 1e-25 AM999887_1236(AM999887\|pid:none) Wolbachia endosymbiont of Culex... 100 8e-25 AY085025_1(AY085025\|pid:none) Arabidopsis thaliana clone 12477 m... 89 1e-24 AC024609_8(AC024609\|pid:none) Arabidopsis thaliana chromosome I ... 89 2e-24 AK175388_1(AK175388\|pid:none) Arabidopsis thaliana mRNA, complet... 89 2e-24 AK176844_1(AK176844\|pid:none) Arabidopsis thaliana mRNA, complet... 89 4e-24 AK060908_1(AK060908\|pid:none) Oryza sativa Japonica Group cDNA c... 88 9e-24
protein update	2009. 7. 8
PSORT	psg: 0.69 gvh: 0.22 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.36 mip: 0.05 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 40.0 %: nuclear 32.0 %: cytoplasmic 12.0 %: cytoskeletal 12.0 %: mitochondrial 4.0 %: peroxisomal >> prediction for SSI719 is nuc
5' end seq. ID	SSI719F
5' end seq.	>SSI719F.Seq ATAAAAATAATAATGATAAAGCAATTAACTAAATTAAATATCACAAAACAATTAGCCAAT AATATTGGTAAAAGACAATATTGCTCATACTTTGAAAATAGAAATAATAATTTACCATAT AACACAGATCCAATTGAAAAAGTTGAAGACTCACCAAATACATCATCAAAATATTTCGAT TTATATAATAAACATAAAACATTTGTACCATTTTTTGATAAGAATTCAATTACAACACCA GCAATTACAGGTTTATATCCAAGAGAAGGTGGGGAATTTGTAGCACCATCAGCATCAATT ATTGGTAATGTTAATTTAGGTGTAGGATCATCAGTTTGGGATAACTGTGTTATTAGAGCA GACGTTAATTACATTCATATTGGTGCATTTACAAATGTTCAAGATGGTACAATCATTAGA GAAGCCAATGAGCCAATATCATTGGACCACAATGGCAGCACAATCATTGGTGATCAAGTA ACAATTGGTCACAGTTGTATACTTGAAGCATGTACTGTCGAAGAGAATTGTTTGATTGGA ATGGGTTCAATTTTGGAACCAGAATCATACGTTGAAGCAAACTCAATTTTAGGTTCAAAT TCAATCTTAACCAAAGGTTCTCGTATTAAATCTGGTGAACTTTGGGTTGGTAAACCAGCT AAATTTGTTAG----------
Length of 5' end seq.	671
3' end seq. ID	SSI719Z
3' end seq.	>SSI719Z.Seq ----------TTAATTACATTCATATTGGTGCATTTACAAATGTTCAAGATGGTACAATC ATTAGAGAAGCCAATGAGCCAATATCATTGGACCACAATGGCAGCACAATCATTGGTGAT CAAGTAACAATTGGTCACAGTTGTATACTTGAAGCATGTACTGTCGAAGAGAATTGTTTG ATTGGAATGGGTTCAATTTTGGAACCAGAATCATACGTTGAAGCAAACTCAATTTTAGGT TCAAATTCAATCTTAACCAAAGGTTCTCGTATTAAATCTGGTGAACTTTGGGTTGGTAAA CCAGCTAAATTTGTTAGAAATTTAACTGAAAATGAAAAAATCGATATTAGTAATAGTGCT CATTCCTATATGTTAAATGCTGAAAAAGCATTTGAATCTTTTGGTTTAGATAAAGATTCT TTCATCTATATTGATGCTCAACAACAAGGCATTCAAGTTGGTTGGAAAGGTAGTTATTTT TCTGAATAAAATAAAATAAATTAAAAATAAATTAAATTAAATAAATAATAATAAAAATAA AAATAAATTTATACCGAAAAAGTTGTAATCAAAAACAAAAAAAAAAAAAAAAAAAAAAAA ATG
Length of 3' end seq.	593
Connected seq. ID	SSI719P
Connected seq.	>SSI719P.Seq ATAAAAATAATAATGATAAAGCAATTAACTAAATTAAATATCACAAAACAATTAGCCAAT AATATTGGTAAAAGACAATATTGCTCATACTTTGAAAATAGAAATAATAATTTACCATAT AACACAGATCCAATTGAAAAAGTTGAAGACTCACCAAATACATCATCAAAATATTTCGAT TTATATAATAAACATAAAACATTTGTACCATTTTTTGATAAGAATTCAATTACAACACCA GCAATTACAGGTTTATATCCAAGAGAAGGTGGGGAATTTGTAGCACCATCAGCATCAATT ATTGGTAATGTTAATTTAGGTGTAGGATCATCAGTTTGGGATAACTGTGTTATTAGAGCA GACGTTAATTACATTCATATTGGTGCATTTACAAATGTTCAAGATGGTACAATCATTAGA GAAGCCAATGAGCCAATATCATTGGACCACAATGGCAGCACAATCATTGGTGATCAAGTA ACAATTGGTCACAGTTGTATACTTGAAGCATGTACTGTCGAAGAGAATTGTTTGATTGGA ATGGGTTCAATTTTGGAACCAGAATCATACGTTGAAGCAAACTCAATTTTAGGTTCAAAT TCAATCTTAACCAAAGGTTCTCGTATTAAATCTGGTGAACTTTGGGTTGGTAAACCAGCT AAATTTGTTAG----------TTAATTACATTCATATTGGTGCATTTACAAATGTTCAAG ATGGTACAATCATTAGAGAAGCCAATGAGCCAATATCATTGGACCACAATGGCAGCACAA TCATTGGTGATCAAGTAACAATTGGTCACAGTTGTATACTTGAAGCATGTACTGTCGAAG AGAATTGTTTGATTGGAATGGGTTCAATTTTGGAACCAGAATCATACGTTGAAGCAAACT CAATTTTAGGTTCAAATTCAATCTTAACCAAAGGTTCTCGTATTAAATCTGGTGAACTTT GGGTTGGTAAACCAGCTAAATTTGTTAGAAATTTAACTGAAAATGAAAAAATCGATATTA GTAATAGTGCTCATTCCTATATGTTAAATGCTGAAAAAGCATTTGAATCTTTTGGTTTAG ATAAAGATTCTTTCATCTATATTGATGCTCAACAACAAGGCATTCAAGTTGGTTGGAAAG GTAGTTATTTTTCTGAATAAAATAAAATAAATTAAAAATAAATTAAATTAAATAAATAAT AATAAAAATAAAAATAAATTTATACCGAAAAAGTTGTAATCAAAAACAAAAAAAAAAAAA AAAAAAAAAAAATG
Length of connected seq.	1264
Full length Seq ID	SSI719E
Full length Seq.	>SSI719E.Seq ATAAAAATAATAATGATAAAGCAATTAACTAAATTAAATATCACAAAACAATTAGCCAAT AATATTGGTAAAAGACAATATTGCTCATACTTTGAAAATAGAAATAATAATTTACCATAT AACACAGATCCAATTGAAAAAGTTGAAGACTCACCAAATACATCATCAAAATATTTCGAT TTATATAATAAACATAAAACATTTGTACCATTTTTTGATAAGAATTCAATTACAACACCA GCAATTACAGGTTTATATCCAAGAGAAGGTGGGGAATTTGTAGCACCATCAGCATCAATT ATTGGTAATGTTAATTTAGGTGTAGGATCATCAGTTTGGGATAACTGTGTTATTAGAGCT TAATTACATTCATATTGGTGCATTTACAAATGTTCAAGATGGTACAATCATTAGAGAAGC CAATGAGCCAATATCATTGGACCACAATGGCAGCACAATCATTGGTGATCAAGTAACAAT TGGTCACAGTTGTATACTTGAAGCATGTACTGTCGAAGAGAATTGTTTGATTGGAATGGG TTCAATTTTGGAACCAGAATCATACGTTGAAGCAAACTCAATTTTAGGTTCAAATTCAAT CTTAACCAAAGGTTCTCGTATTAAATCTGGTGAACTTTGGGTTGGTAAACCAGCTAAATT TGTTAGGTTAGAAATTTAACTGAAAATGAAAAAATCGATATTAGTAATAGTGCTCATTCC TATATGTTAAATGCTGAAAAAGCATTTGAATCTTTTGGTTTAGATAAAGATTCTTTCATC TATATTGATGCTCAACAACAAGGCATTCAAGTTGGTTGGAAAGGTAGTTATTTTTCTGAA TAAAATAAAATAAATTAAAAATAAATTAAATTAAATAAATAATAATAAAAATAAAAATAA ATTTATACCGAAAAAGTTGTAATCAAAAACAAAAAAAAAAAAAAAAAA
Length of full length seq.	948

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas