>SSI718 (SSI718Q) /CSM/SS/SSI7-A/SSI718Q.Seq.d/
XXXXXXXXXXGGAGCAGCATCAGCATCACAACAAAATAATCCTACTTCATTATTTGAAAT
TACAGATTTAAGTTTAAAGAATGATATTATAGAGGGTTTACAAGAACAACCTCAAGATTC
AGATCTATTGGCACAATATGGTGTATTATTGTCAATGGAGGGTAAAAATAAAGAAGCAGA
AGAATCATTAAGGAAAGCTGTAGAGGTTGATACTGATAACTCTAGAGCTTGGCAAGCATA
TGGTGAATTTTTAGAAAGAACAAATAATCCAAAGAAAGCAAAAGAAGTTTATGGTGAAGC
TTATAAACATGCTGCTCCAAAGATTGCATTAGACGAAGATGATAGTAGTTTATTATTAAG
TTATGCAATTTTCATTCAAAAATCAGGAGAAATAGATAAAGCAGAGAAATTATATAAAAG
AATTGTTACTAGTGGTGCTCGTAGTTCAGAGTCATTAGGTCGTTATGGTTTATTCTTATT
GGAGGTTAAAAAAGATGTTGAAAAGGGTGGCATTTACTTAAAAGATGCAGCAGATATTGA
CCCACCATCACCTGAATGGTGTACAAGATATTCAAATTATCTTAAAACTTATAAAAAAGA
TGAATTTGAAGCAACAAAATATCAAAAGAGAGTTAGTTTATATGTAAATTAATATTA

---AASASQQNNPTSLFEITDLSLKNDIIEGLQEQPQDSDLLAQYGVLLSMEGKNKEAEE
SLRKAVEVDTDNSRAWQAYGEFLERTNNPKKAKEVYGEAYKHAAPKIALDEDDSSLLLSY
AIFIQKSGEIDKAEKLYKRIVTSGARSSESLGRYGLFLLEVKKDVEKGGIYLKDAADIDP
PSPEWCTRYSNYLKTYKKDEFEATKYQKRVSLYVN*y

Frame A:
---eqhqhhnkiillhylklqi*v*rmil*rvyknnlkiqiywhnmvyycqwrvkikkqk
nh*gkl*rlilitlelgkhmvnf*keqiiqrkqkkfmvklinmllqrlh*tkmivvyy*v
mqfsfknqek*ikqrnyikelllvvlvvqsh*vvmvysywrlkkmlkrvaft*kmqqilt
hhhlngvqdiqiilklikkmnlkqqnikrelvym*ini


Frame B:
---ssisittk*syfii*nyrfkfke*yyrgftrttsrfrsigtiwciivngg*k*rsrr
iikescrg*y**l*slasiw*ifrknk*skeskrslw*sl*tccskdcirrr***fiikl
cnfhskirrnr*sreii*kncy*wcs*frvirslwfiligg*krc*kgwhllkrcsry*p
tit*mvykifkls*nl*kr*i*snkiskes*ficklil


Frame C:
---AASASQQNNPTSLFEITDLSLKNDIIEGLQEQPQDSDLLAQYGVLLSMEGKNKEAEE
SLRKAVEVDTDNSRAWQAYGEFLERTNNPKKAKEVYGEAYKHAAPKIALDEDDSSLLLSY
AIFIQKSGEIDKAEKLYKRIVTSGARSSESLGRYGLFLLEVKKDVEKGGIYLKDAADIDP
PSPEWCTRYSNYLKTYKKDEFEATKYQKRVSLYVN*y

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI718 (SSI718Q) /CSM/SS/SSI7-A/SSI718Q.Seq.d/                       1283   0.0
SSE324 (SSE324Q) /CSM/SS/SSE3-A/SSE324Q.Seq.d/                        773   0.0
SSM874 (SSM874Q) /CSM/SS/SSM8-D/SSM874Q.Seq.d/                        474   e-133
CHL265 (CHL265Q) /CSM/CH/CHL2-C/CHL265Q.Seq.d/                         40   0.042
CHH174 (CHH174Q) /CSM/CH/CHH1-D/CHH174Q.Seq.d/                         40   0.042
AFE457 (AFE457Q) /CSM/AF/AFE4-C/AFE457Q.Seq.d/                         40   0.042
VSA725 (VSA725Q) /CSM/VS/VSA7-B/VSA725Q.Seq.d/                         38   0.16
VHQ352 (VHQ352Q) /CSM/VH/VHQ3-C/VHQ352Q.Seq.d/                         36   0.65
VHP471 (VHP471Q) /CSM/VH/VHP4-C/VHP471Q.Seq.d/                         36   0.65
VHP379 (VHP379Q) /CSM/VH/VHP3-D/VHP379Q.Seq.d/                         36   0.65

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34  0.031  9
AC010218|AC010218.7 Homo sapiens chromosome 5 clone CTC-214C18, complete sequence.    44  0.034  3
AC104912|AC104912.4 Mus musculus clone RP23-308E16, WORKING DRAFT SEQUENCE, 6 ordered pieces.    34  0.050  5
AE015938|AE015938.1 Clostridium tetani E88, section 3 of 10 of the complete genome.    36  0.051  10
AC095423|AC095423.7 Rattus norvegicus clone CH230-7C18, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44  0.066  6
AC120522|AC120522.2 Canis familiaris clone RP81-417N7, WORKING DRAFT SEQUENCE, 1 ordered piece.    42  0.096  6
AE003478|AE003478.3 Drosophila melanogaster chromosome 3L, section 12 of 83 of the complete sequence.    36  0.11  7
BH435571|BH435571.1 BOGVN96TF BOGV Brassica oleracea genomic clone BOGVN96, DNA sequence.    44  0.13  2
CC280273|CC280273.1 CH261-24J8_RM1.1 CH261 Gallus gallus genomic clone CH261-24J8, DNA sequence.    48  0.14  1
AC021745|AC021745.3 Homo sapiens chromosome 11 clone RP11-339D1 map 11, WORKING DRAFT SEQUENCE, 9 unordered pieces.    44  0.14  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP009380_1340(AP009380|pid:none) Porphyromonas gingivalis ATCC 3...    68   3e-10
CP000099_2442(CP000099|pid:none) Methanosarcina barkeri str. Fus...    64   5e-09
CP000099_3087(CP000099|pid:none) Methanosarcina barkeri str. Fus...    57   4e-07
CP000099_2445(CP000099|pid:none) Methanosarcina barkeri str. Fus...    57   6e-07
CP001132_2246(CP001132|pid:none) Acidithiobacillus ferrooxidans ...    50   4e-05
CP000471_3263(CP000471|pid:none) Magnetococcus sp. MC-1, complet...    50   4e-05
AE000666_69(AE000666|pid:none) Methanothermobacter thermautotrop...    49   2e-04
BC074400_1(BC074400|pid:none) Xenopus laevis MGC84386 protein, m...    48   2e-04
AC159432_5(AC159432|pid:none) Trypanosoma brucei chromosome 5 cl...    47   4e-04
AF305603_1(AF305603|pid:none) Borrelia burgdorferi isolate 3 LMP...    47   4e-04

 psg: 0.70  gvh: 0.33  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SSI718 is cyt

>SSI718Z.Seq
----------GGAGCAGCATCAGCATCACAACAAAATAATCCTACTTCATTATTTGAAAT
TACAGATTTAAGTTTAAAGAATGATATTATAGAGGGTTTACAAGAACAACCTCAAGATTC
AGATCTATTGGCACAATATGGTGTATTATTGTCAATGGAGGGTAAAAATAAAGAAGCAGA
AGAATCATTAAGGAAAGCTGTAGAGGTTGATACTGATAACTCTAGAGCTTGGCAAGCATA
TGGTGAATTTTTAGAAAGAACAAATAATCCAAAGAAAGCAAAAGAAGTTTATGGTGAAGC
TTATAAACATGCTGCTCCAAAGATTGCATTAGACGAAGATGATAGTAGTTTATTATTAAG
TTATGCAATTTTCATTCAAAAATCAGGAGAAATAGATAAAGCAGAGAAATTATATAAAAG
AATTGTTACTAGTGGTGCTCGTAGTTCAGAGTCATTAGGTCGTTATGGTTTATTCTTATT
GGAGGTTAAAAAAGATGTTGAAAAGGGTGGCATTTACTTAAAAGATGCAGCAGATATTGA
CCCACCATCACCTGAATGGTGTACAAGATATTCAAATTATCTTAAAACTTATAAAAAAGA
TGAATTTGAAGCAACAAAATATCAAAAGAGAGTTAGTTTATATGTAAATTAATATTA