>SSI714 (SSI714Q) /CSM/SS/SSI7-A/SSI714Q.Seq.d/
XXXXXXXXXXCAAAGCATGTTGACTTTATTGACATTGCAAATGATCAACCAAAGGAATAC
ATTAAAAGGAAGATCCAAAAATATTTAAATCAGTAAAAACAGAAAGAGGTCCATTAGATG
ATCCAAAATGGAGAGACAAAGTTGAACCAGTAATGACATGCTATAAATTGGTTCATGCAG
AATTTAAATATTGGGGTTTCCAAACTAAAGTTGAAAATGTTATCCAAGATACAGGTGTAA
GAGATGTACTATTAAAAGCACACAGAGCTTTATTTTGTTGGATTGATGAATGGTTTGGTT
TAACAATTGAAGATATTAGAAAAATTGAAGAAGAAACTGAAGCAGAATTAGCAAAGAAAT
TAGAAGAAAATAAAGCTGCAAATAAATAAACAAAACATTATTGAAAAAAAAAAAAGATAA
AATTTAAAAGCAAATGAAGAAATTCTATCTGTTTTTATTTTATTTTTCCCAAAACAAATC
AAAATAAATCAAATCAAATCAAATCAAATCAAATCAAATCAAAACCAATCAAAACAAAAC
AAAACAAAACAAAATAAATCAAATCAAAACAAAACAAAACAAAACAAAACAAAATTAATA
AAGGTGTTATATGTAATTAAATTAAAA

---kac*ly*hck*stkgih*KEDPKIFKSVKTERGPLDDPKWRDKVEPVMTCYKLVHAE
FKYWGFQTKVENVIQDTGVRDVLLKAHRALFCWIDEWFGLTIEDIRKIEEETEAELAKKL
EENKAANK*tkhy*kkkkikfksk*rnsicfyfifpktnqnksnqiksnqikskpiktkq
nktk*ikskqnktkqnkinkgvicn*ik

Frame A:
---kac*ly*hck*stkgih*KEDPKIFKSVKTERGPLDDPKWRDKVEPVMTCYKLVHAE
FKYWGFQTKVENVIQDTGVRDVLLKAHRALFCWIDEWFGLTIEDIRKIEEETEAELAKKL
EENKAANK*tkhy*kkkkikfksk*rnsicfyfifpktnqnksnqiksnqikskpiktkq
nktk*ikskqnktkqnkinkgvicn*ik


Frame B:
---khvdfidiandqpkeyikrkiqkylnq*kqkevh*miqngetklnq**hainwfmqn
lnigvsklklkmlskiqv*emyy*khtelyfvglmnglv*qlkileklkkklkqn*qrn*
kkiklqinkqniiekkkr*nlkaneeilsvfilffpkqikinqiksnqiksnqnqskqnk
tkqnksnqnktkqnktklikvlyviklk


Frame C:
---smltlltlqminqrntlkgrskni*isknrkrsir*skmerqs*tsndml*igscri
*ilgfpn*s*kcypryrckrctikstqsfilld**mvwfnn*ry*kn*rrn*sriskeir
rk*sck*inktllkkkkdki*kqmkkfylflfyfsqnksk*iksnqiksnqiktnqnktk
qnkinqiktkqnktkqn**rcym*ln*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI714 (SSI714Q) /CSM/SS/SSI7-A/SSI714Q.Seq.d/                        803   0.0
SSI713 (SSI713Q) /CSM/SS/SSI7-A/SSI713Q.Seq.d/                        771   0.0
SSK416 (SSK416Q) /CSM/SS/SSK4-A/SSK416Q.Seq.d/                        698   0.0
SSI163 (SSI163Q) /CSM/SS/SSI1-C/SSI163Q.Seq.d/                        682   0.0
AHR448 (AHR448Q) /CSM/AH/AHR4-B/AHR448Q.Seq.d/                        571   e-162
SFF591 (SFF591Q) /CSM/SF/SFF5-D/SFF591Q.Seq.d/                        176   3e-43
CFI659 (CFI659Q) /CSM/CF/CFI6-C/CFI659Q.Seq.d/                        109   5e-23
CFJ427 (CFJ427Q) /CSM/CF/CFJ4-B/CFJ427Q.Seq.d/                         72   1e-11
CFF388 (CFF388Q) /CSM/CF/CFF3-D/CFF388Q.Seq.d/                         72   1e-11
VSJ588 (VSJ588Q) /CSM/VS/VSJ5-D/VSJ588Q.Seq.d/                         52   1e-05

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF205062|AF205062.1 Dictyostelium discoideum phosphatidylinositol transfer protein 2 (pitB) mRNA, complete cds.   652  0.0  4
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   424  0.0  6
AF205061|AF205061.1 Dictyostelium discoideum phosphatidylinositol transfer protein 1 (pitA) mRNA, complete cds.    52  3e-08  3
AC092652|AC092652.2 Homo sapiens chromosome 2 clone RP11-434H14, complete sequence.    52  0.002  2
AC092097|AC092097.2 Homo sapiens chromosome UNK clone RP11-376A21, WORKING DRAFT SEQUENCE, 6 unordered pieces.    34  0.022  9
AC090047|AC090047.4 Homo sapiens chromosome UNK clone RP11-759E18, WORKING DRAFT SEQUENCE, 78 unordered pieces.    52  0.035  5
X95910|X95910.1 C.jejuni ftsA gene.                               38  0.27  2
AL512449|AL512449.6 Human DNA sequence from clone RP11-286E7 on chromosome 1.    46  0.29  3
AC107736|AC107736.6 Mus musculus clone RP23-354B2, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    36  0.35  6
B62555|B62555.1 T22D18TR TAMU Arabidopsis thaliana genomic clone T22D18, genomic survey sequence.    40  0.39  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9NCL7) RecName: Full=Phosphatidylinositol transfer protein 2; ...   187   2e-52
AC116986_84(AC116986|pid:none) Dictyostelium discoideum chromoso...   187   2e-52
AB179084_1(AB179084|pid:none) Macaca fascicularis testis cDNA cl...   109   5e-23
BC168561_1(BC168561|pid:none) Xenopus tropicalis cDNA clone MGC:...   109   7e-23
BC168908_1(BC168908|pid:none) Rattus norvegicus phosphatidylinos...   108   1e-22
(Q9BZ72) RecName: Full=Membrane-associated phosphatidylinositol ...   108   2e-22
BC141813_1(BC141813|pid:none) Homo sapiens phosphatidylinositol ...   108   2e-22
BC070452_1(BC070452|pid:none) Mus musculus phosphatidylinositol ...   107   3e-22
AK129364_1(AK129364|pid:none) Mus musculus mRNA for mKIAA1457 pr...   107   3e-22
AF058693_1(AF058693|pid:none) Mus musculus M-RdgB2 retinal degen...   107   3e-22

 psg: 0.40  gvh: 0.33  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SSI714 is cyt

>SSI714Z.Seq
----------CAAAGCATGTTGACTTTATTGACATTGCAAATGATCAACCAAAGGAATAC
ATTAAAAGGAAGATCCAAAAATATTTAAATCAGTAAAAACAGAAAGAGGTCCATTAGATG
ATCCAAAATGGAGAGACAAAGTTGAACCAGTAATGACATGCTATAAATTGGTTCATGCAG
AATTTAAATATTGGGGTTTCCAAACTAAAGTTGAAAATGTTATCCAAGATACAGGTGTAA
GAGATGTACTATTAAAAGCACACAGAGCTTTATTTTGTTGGATTGATGAATGGTTTGGTT
TAACAATTGAAGATATTAGAAAAATTGAAGAAGAAACTGAAGCAGAATTAGCAAAGAAAT
TAGAAGAAAATAAAGCTGCAAATAAATAAACAAAACATTATTGAAAAAAAAAAAAGATAA
AATTTAAAAGCAAATGAAGAAATTCTATCTGTTTTTATTTTATTTTTCCCAAAACAAATC
AAAATAAATCAAATCAAATCAAATCAAATCAAATCAAATCAAAACCAATCAAAACAAAAC
AAAACAAAACAAAATAAATCAAATCAAAACAAAACAAAACAAAACAAAACAAAATTAATA
AAGGTGTTATATGTAATTAAATTAAAA