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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI710
Library SS
(Link to library)
Clone ID SSI710
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U01839-1|Contig-U15575-1
Original site URL
Representative seq. ID SSI710P
(Link to Original site)
Representative DNA sequence 
>SSI710 (SSI710Q) /CSM/SS/SSI7-A/SSI710Q.Seq.d/
CCAAAAACTATTTATAAATTTTGTCTCCAAACATTTTCCCAAAAAATATCCCTAAATCAA
GTCAAAAAACAGTCAAAATAAAAAAAAAATATCTTTGTACAAATTTAACATTTATTTTTT
TTTTTCTTTAAAATTTTATTTATTTTTTTTTTTTTAATTTTAAATCTTAAAAAAAAAAAA
AAAAAAAAATTTTTAAAAAAAAAAAAAAATTAATAATAGTAAAATCTATATTTAATTAGT
AGATTAATTTAATTCCAGTAAAGACAACATTTGAACCAACTATAGAAATTTCATTTTCAT
CTTTATTTTAAAAAAAGTGAAATAATATTTTATTTATTTATTCACACTTTTTTTCCATAT
ATCAATCAAATCAAATCAATCAACCAAATAATCAAAACAATTAATAAATTAAAATGGGTA
GAAAGXXXXXXXXXXAATAATAATAATAATAATAATAATAATAATAATATGTCTCCAATT
GGATCACCACCAAGCAAATGTCAACAAGTACCAGCATTTGATTCGACTCAAGCAACACAA
GCTTTACTCTCTTTACATAATGCTTCAAAATTATTTTGCTCATCACCAGAAGATACCTCA
CCAATGACATCACCAAGAACTCCACCATTTTCATCAACCAATACAAATACTTTACAAACA
TCACCAAATAGCCAACAAAAATCAAAATCTTTACCACCTCTCATTTTTAATGAAAATAAT
AATCAAAATAATAATAATCAAAATAATAACCAAAATAATAATAATAATAATAGCAATAAT
ACGAACACGAATAATAATAATCAAAATAATAGTTCAAGAAGTATTTTATTACCTCCAATC
AGTTTATATAATAGTAATAGTAATAGTAATTCTTCCTCAACTTTAACAAGTCCAACTTCT
TCATCTTCAAATCTAAATGATGATTTATTTTTGAAGAAAAGAAAATTGGAATTGATTCAT
TAAAATAATAATATAATATACAAAA
sequence update 1998.11.12
Translated Amino Acid sequence 
pktiykfclqtfsqkislnqvkkqsk*kknifvqi*hlfffffkilfiffflilnlkkkk
kkkflkkkkn****nlylisrli*fq*rqhlnql*KFHFHLYFKKSEIIFYLFIHTFFPY
INQIKSINQIIKTINKLKWVE---

---NNNNNNNNNNNMSPIGSPPSKCQQVPAFDSTQATQALLSLHNASKLFCSSPEDTSPM
TSPRTPPFSSTNTNTLQTSPNSQQKSKSLPPLIFNENNNQNNNNQNNNQNNNNNNSNNTN
TNNNNQNNSSRSILLPPISLYNSNSNSNSSSTLTSPTSSSSNLNDDLFLKKRKLELIH*n
nniiyk
Translated Amino Acid sequence (All Frames) 
Frame A:
pktiykfclqtfsqkislnqvkkqsk*kknifvqi*hlfffffkilfiffflilnlkkkk
kkkflkkkkn****nlylisrli*fq*rqhlnql*KFHFHLYFKKSEIIFYLFIHTFFPY
INQIKSINQIIKTINKLKWVE---

---NNNNNNNNNNNMSPIGSPPSKCQQVPAFDSTQATQALLSLHNASKLFCSSPEDTSPM
TSPRTPPFSSTNTNTLQTSPNSQQKSKSLPPLIFNENNNQNNNNQNNNQNNNNNNSNNTN
TNNNNQNNSSRSILLPPISLYNSNSNSNSSSTLTSPTSSSSNLNDDLFLKKRKLELIH*n
nniiyk

Frame B:
qklfinfvskhfpkkyp*iksknsqnkkkislykfniyfffslkfylffff*f*ilkkkk
kknf*kkkkinnskiyi*lvd*fnsskdni*tnyrnfififilkkvk*yfiylftlffhi
siksnqstk*skqlin*ng*k---

---iiiiiiiiiiiclqldhhqanvnkyqhlirlkqhklyslyimlqnyfahhqkiphq*
hhqelhhfhqpiqilykhhqianknqnlyhlsflmkiiikiiiikiitkiiiiiiaiirt
riiiikiivqevfyylqsvyiivivivilpql*qvqllhlqi*mmiyf*rkenwn*fiki
ii*ytk

Frame C:
knyl*ilspnifpknipkssqktvkikkkylctnltfifffl*nfiyffffnfks*kkkk
kkifkkkkkliivksifn**inlipvkttfeptieisfsslf*kk*nnilfiyshffsiy
qsnqinqpnnqnn**ikmgrk---

---**********yvsnwittkqmststsi*fdssntsftlft*cfkiillitrryltnd
itknstifinqykyftnitk*ptkikifttshf**k**sk***sk**pk******q*yeh
e***sk**fkkyfitsnqfi*******fflnfnksnffifksk**fifeekkigidslk*
*yniq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI710 (SSI710Q) /CSM/SS/SSI7-A/SSI710Q.Seq.d/                        470   e-131
SSE452 (SSE452Q) /CSM/SS/SSE4-C/SSE452Q.Seq.d/                        295   7e-79
VSI785 (VSI785Q) /CSM/VS/VSI7-D/VSI785Q.Seq.d/                         46   0.001
VSF145 (VSF145Q) /CSM/VS/VSF1-B/VSF145Q.Seq.d/                         46   0.001
VHM382 (VHM382Q) /CSM/VH/VHM3-D/VHM382Q.Seq.d/                         46   0.001
VHE257 (VHE257Q) /CSM/VH/VHE2-C/VHE257Q.Seq.d/                         46   0.001
VHA659 (VHA659Q) /CSM/VH/VHA6-C/VHA659Q.Seq.d/                         46   0.001
SSM631 (SSM631Q) /CSM/SS/SSM6-B/SSM631Q.Seq.d/                         46   0.001
SLE748 (SLE748Q) /CSM/SL/SLE7-B/SLE748Q.Seq.d/                         46   0.001
FC-AR24 (FC-AR24Q) /CSM/FC/FC-AR/FC-AR24Q.Seq.d/                       46   0.001
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    46  6e-06  8
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.          46  6e-06  7
AC115680|AC115680.2 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence.    44  8e-06  8
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence.    44  6e-05  8
AE014841|AE014841.1 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence.    42  2e-04  7
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.          46  2e-04  6
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    46  2e-04  6
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    44  2e-04  9
AE014843|AE014843.1 Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete sequence.    46  2e-04  7
AE014842|AE014842.1 Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete sequence.    46  3e-04  4
dna update 2003. 7.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000233_169(CP000233|pid:none) Lactobacillus salivarius UCC118,...    36   2.3
BT044842_1(BT044842|pid:none) Salmo salar clone ssal-rgf-505-156...    35   3.0
(B0X560) RecName: Full=Protein distal antenna;                         35   3.0
(Q8SSS9) RecName: Full=Probable serine/threonine-protein kinase ...    35   3.9
BA000030_112(BA000030|pid:none) Streptomyces avermitilis MA-4680...    35   5.1
AF056334_1(AF056334|pid:none) Homo sapiens cancer/testis antigen...    35   5.1
S14183(S14183) DNA-directed RNA polymerase (EC 2.7.7.6) largest ...    34   6.7
AF233440_25(AF233440|pid:none) Sulfolobus islandicus plasmid pIN...    34   8.7
AC117075_92(AC117075|pid:none) Dictyostelium discoideum chromoso...    34   8.7
CP001160_98(CP001160|pid:none) Thalassiosira pseudonana CCMP1335...    34   8.7
protein update 2009. 6.13
PSORT 

 psg: 0.84  gvh: 0.49  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSI710 is cyt
5' end seq. ID SSI710F
5' end seq. 
>SSI710F.Seq
CCAAAAACTATTTATAAATTTTGTCTCCAAACATTTTCCCAAAAAATATCCCTAAATCAA
GTCAAAAAACAGTCAAAATAAAAAAAAAATATCTTTGTACAAATTTAACATTTATTTTTT
TTTTTCTTTAAAATTTTATTTATTTTTTTTTTTTTAATTTTAAATCTTAAAAAAAAAAAA
AAAAAAAAATTTTTAAAAAAAAAAAAAAATTAATAATAGTAAAATCTATATTTAATTAGT
AGATTAATTTAATTCCAGTAAAGACAACATTTGAACCAACTATAGAAATTTCATTTTCAT
CTTTATTTTAAAAAAAGTGAAATAATATTTTATTTATTTATTCACACTTTTTTTCCATAT
ATCAATCAAATCAAATCAATCAACCAAATAATCAAAACAATTAATAAATTAAAATGGGTA
GAAAG----------
Length of 5' end seq. 425
3' end seq. ID SSI710Z
3' end seq. 
>SSI710Z.Seq
----------AATAATAATAATAATAATAATAATAATAATAATATGTCTCCAATTGGATC
ACCACCAAGCAAATGTCAACAAGTACCAGCATTTGATTCGACTCAAGCAACACAAGCTTT
ACTCTCTTTACATAATGCTTCAAAATTATTTTGCTCATCACCAGAAGATACCTCACCAAT
GACATCACCAAGAACTCCACCATTTTCATCAACCAATACAAATACTTTACAAACATCACC
AAATAGCCAACAAAAATCAAAATCTTTACCACCTCTCATTTTTAATGAAAATAATAATCA
AAATAATAATAATCAAAATAATAACCAAAATAATAATAATAATAATAGCAATAATACGAA
CACGAATAATAATAATCAAAATAATAGTTCAAGAAGTATTTTATTACCTCCAATCAGTTT
ATATAATAGTAATAGTAATAGTAATTCTTCCTCAACTTTAACAAGTCCAACTTCTTCATC
TTCAAATCTAAATGATGATTTATTTTTGAAGAAAAGAAAATTGGAATTGATTCATTAAAA
TAATAATATAATATACAAAA
Length of 3' end seq. 550
Connected seq. ID SSI710P
Connected seq. 
>SSI710P.Seq
CCAAAAACTATTTATAAATTTTGTCTCCAAACATTTTCCCAAAAAATATCCCTAAATCAA
GTCAAAAAACAGTCAAAATAAAAAAAAAATATCTTTGTACAAATTTAACATTTATTTTTT
TTTTTCTTTAAAATTTTATTTATTTTTTTTTTTTTAATTTTAAATCTTAAAAAAAAAAAA
AAAAAAAAATTTTTAAAAAAAAAAAAAAATTAATAATAGTAAAATCTATATTTAATTAGT
AGATTAATTTAATTCCAGTAAAGACAACATTTGAACCAACTATAGAAATTTCATTTTCAT
CTTTATTTTAAAAAAAGTGAAATAATATTTTATTTATTTATTCACACTTTTTTTCCATAT
ATCAATCAAATCAAATCAATCAACCAAATAATCAAAACAATTAATAAATTAAAATGGGTA
GAAAG----------AATAATAATAATAATAATAATAATAATAATAATATGTCTCCAATT
GGATCACCACCAAGCAAATGTCAACAAGTACCAGCATTTGATTCGACTCAAGCAACACAA
GCTTTACTCTCTTTACATAATGCTTCAAAATTATTTTGCTCATCACCAGAAGATACCTCA
CCAATGACATCACCAAGAACTCCACCATTTTCATCAACCAATACAAATACTTTACAAACA
TCACCAAATAGCCAACAAAAATCAAAATCTTTACCACCTCTCATTTTTAATGAAAATAAT
AATCAAAATAATAATAATCAAAATAATAACCAAAATAATAATAATAATAATAGCAATAAT
ACGAACACGAATAATAATAATCAAAATAATAGTTCAAGAAGTATTTTATTACCTCCAATC
AGTTTATATAATAGTAATAGTAATAGTAATTCTTCCTCAACTTTAACAAGTCCAACTTCT
TCATCTTCAAATCTAAATGATGATTTATTTTTGAAGAAAAGAAAATTGGAATTGATTCAT
TAAAATAATAATATAATATACAAAA
Length of connected seq. 975
Full length Seq ID -
Full length Seq. -
Length of full length seq. -