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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI709
Library SS
(Link to library)
Clone ID SSI709
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13888-1
Original site URL
Representative seq. ID SSI709E
(Link to Original site)
Representative DNA sequence 
>SSI709 (SSI709Q) /CSM/SS/SSI7-A/SSI709Q.Seq.d/
CATGTGGTTTTTTCATTTCATCAGATTGAATTAAAACTTTTCCAGTTCTAATACCTTTAC
AAATTGAACGANGTGGTTGTTCCATACAACCACCAGCTCTTAAAACAACTAAAGCACAAA
TTCTACTATTTAATTCTTCACCATGATAAAGTGAACCAGTTGGAGTAGTAACAATCTTTT
CAGTGAATGGTAAATAAGTTAAAGCCTCTTCAATGATTAATGAACATAAACGATCAGAAT
AGAAAACGAAATCACCGACTTTGGTATCCTTATTTCTAAGTATTGAAAGCATTGCTTTAA
TTTGATTAGTTTCCTTAATTACATGAATTGAACTTGGTAATTCCAATCCCTCCAAATCCA
ATTGTGCTGTCTTTTCTGGATCAAATCCTCTCTCTTTTAATTTTAATCTAATATGATTTG
TTAATAAATTAATTGCAACAATATTATCTGATCCTCTTGGCACAATAATATCTGCATATT
TTTTTAACTATACATATTCATATAAAAAAATAAATAAAACATTTATTAATATATATATAT
AAAA
sequence update 1999. 6.22
Translated Amino Acid sequence 
cgffissd*iktfpvliplqierxgcsiqppalkttkaqillfnssp**sepvgvvtifs
vngk*vkassminehkrse*ktksptlvslflsiesiali*lvslit*ielgnsnpsksn
cavfsgsnplsfnfnli*FVNKLIATILSDPLGTIISAYFFNYTYSYKKINKTFINIYI*
Translated Amino Acid sequence (All Frames) 
Frame A:
hvvfsfhqielklfqf*ylyklnxvvvpynhqllkqlkhkfyylilhhdkvnqle**qsf
q*mvnklkplq*lmnindqnrkrnhrlwypyf*vlkall*fd*fp*lhelnlvipippnp
ivlsfldqilsllili*ydllin*lqqyylillaq*ylhifltihihikk*ikhlliyiy
k


Frame B:
mwffhfirln*nfsssntftn*txwlfhtttss*nn*stnsti*fftmik*tswssnnlf
sew*is*slfnd**t*tirieneitdfgilisky*khcfnlisflnymn*tw*fqslqiq
lcclfwiksslf*f*snmic**incnnii*sswhnniciff*lyifi*knk*niy*yiyi
k


Frame C:
cgffissd*iktfpvliplqierxgcsiqppalkttkaqillfnssp**sepvgvvtifs
vngk*vkassminehkrse*ktksptlvslflsiesiali*lvslit*ielgnsnpsksn
cavfsgsnplsfnfnli*FVNKLIATILSDPLGTIISAYFFNYTYSYKKINKTFINIYI*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI709 (SSI709Q) /CSM/SS/SSI7-A/SSI709Q.Seq.d/                        942   0.0
VFC632 (VFC632Q) /CSM/VF/VFC6-B/VFC632Q.Seq.d/                        922   0.0
SSD154 (SSD154Q) /CSM/SS/SSD1-C/SSD154Q.Seq.d/                        841   0.0
AFD895 (AFD895Q) /CSM/AF/AFD8-D/AFD895Q.Seq.d/                        287   9e-77
SSL849 (SSL849Q) /CSM/SS/SSL8-C/SSL849Q.Seq.d/                        163   3e-39
VHI203 (VHI203Q) /CSM/VH/VHI2-A/VHI203Q.Seq.d/                         40   0.034
SSL510 (SSL510Q) /CSM/SS/SSL5-A/SSL510Q.Seq.d/                         40   0.034
SSC371 (SSC371Q) /CSM/SS/SSC3-C/SSC371Q.Seq.d/                         40   0.034
CFJ181 (CFJ181Q) /CSM/CF/CFJ1-D/CFJ181Q.Seq.d/                         40   0.034
AFK635 (AFK635Q) /CSM/AF/AFK6-B/AFK635Q.Seq.d/                         38   0.14
own update 2002.12.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC006369|AC006369.3 Homo sapiens BAC clone RP11-278G12 from 2, complete sequence.    52  0.022  2
AE014845|AE014845.1 Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete sequence.    44  0.44  5
BY707724|BY707724.1 Mus musculus 10 day old male pancreas cDNA, RIKEN full-length enriched library, clone:1810036A22, 5' end partial sequence.    40  0.49  2
BX005387|BX005387.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    38  0.53  3
BX546493|BX546493.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    40  0.66  3
AC006281|AC006281.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44  0.83  3
AL136977|AL136977.8 Human DNA sequence from clone RP11-230E14 on chromosome Xq22.1-22.3.    42  1.5  3
AC126181|AC126181.4 Rattus norvegicus clone CH230-69E16, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  1.8  1
BI803629|BI803629.1 H115B06 Endosperm library from Oryza sativa (10 days after anthesis ) Oryza sativa cDNA clone H115B06, mRNA sequence.    38  2.3  2
AC016832|AC016832.8 Homo sapiens, clone RP11-132E3, complete sequence.    36  2.4  3
dna update 2003. 9. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB011477_10(AB011477|pid:none) Arabidopsis thaliana genomic DNA,...   139   4e-32
EU959693_1(EU959693|pid:none) Zea mays clone 219409 unknown mRNA.     139   6e-32
AP003920_7(AP003920|pid:none) Oryza sativa Japonica Group genomi...   138   8e-32
AK175542_1(AK175542|pid:none) Arabidopsis thaliana mRNA for puta...   138   1e-31
AK102065_1(AK102065|pid:none) Oryza sativa Japonica Group cDNA c...   137   1e-31
AB024028_16(AB024028|pid:none) Arabidopsis thaliana genomic DNA,...   136   4e-31
AM456869_1(AM456869|pid:none) Vitis vinifera contig VV78X229720....   134   1e-30
AE013599_2604(AE013599|pid:none) Drosophila melanogaster chromos...   134   2e-30
AE013599_2605(AE013599|pid:none) Drosophila melanogaster chromos...   134   2e-30
AK228608_1(AK228608|pid:none) Arabidopsis thaliana mRNA for urac...   133   3e-30
protein update 2009. 7. 8
PSORT 

 psg: 0.82  gvh: 0.46  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 36.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for SSI709 is mit
5' end seq. ID SSI709F
5' end seq. 
>SSI709F.Seq
CATGTGGTTTTTTCATTTCATCAGATTGAATTAAAACTTTTCCAGTTCTAATACCTTTAC
AAATTGAACGATGTGNTTGTTCCATACAACCACCAGCTCTTAAAACAACTAAAGCACAAA
TTCTACTATTTAATTCTTCACCATGATAAAGTGAACCAGTTGGAGTAGTAACAATCTTTT
CAGTGAATGGTAAATAAGTTAAAGCCTCTTCAATGATTAATGAACATAAACGATCAGAAT
AGAAAACGAAATCACCGACTTTGGTATCCTTATTTCTAAGTATTGAAAGCATTGCTTTAA
TTTGATTAGTTTCCTTAATTACATGAATTGAACTTGGTAATTCCAATCCCTCCAAATCCA
ATTGTGCTGTCTTTTCTGGATCAAATCCTCTCTCTTTTAATTTTAATCTAATATGATTTG
TTAATAAATTAATTGCAACAATATTATCTGATCCTCTTGGCACAATAATATCTGCATATT
TTTTTAACTATACATATTCATATAAAAAAATAAATAAAACATTTATTAATATATATATAT
----------
Length of 5' end seq. 540
3' end seq. ID SSI709Z
3' end seq. 
>SSI709Z.Seq
----------TCATCAGATTGAATTAAAACTTTTCCAGTTCTAATACCTTTACAAATTGA
ACGAAGTGGTTGTTCCATACAACCACCAGCTCTTAAAACAACTAAAGCACAAATTCTACT
ATTTAATTCTTCACCATGATAAAGTGAACCAGTTGGAGTAGTAACAATCTTTTCAGTGAA
TGGTAAATAAGTTAAAGCCTCTTCAATGATTAATGAACATAAACGATCAGAATAGAAAAC
GAAATCACCGACTTTGGTATCCTTATTTCTAAGTATTGAAAGCATTGCTTTAATTTGATT
AGTTTCCTTAATTACATGAATTGAACTTGGTAATTCCAATCCCTCCAAATCCAATTGTGC
TGTCTTTTCTGGATCAAATCCTCTCTCTTTTAATTTTAATCTAATATGATTTGTTAATAA
ATTAATTGCAACAATATTATCTGATCCTCTTGGCACAATAATATCTGCATATTTTTTTAA
CTATACATATTCATATAAAAAAATAAATAAAACATTTATTAATATATATATATAAAA
Length of 3' end seq. 527
Connected seq. ID SSI709P
Connected seq. 
>SSI709P.Seq
CATGTGGTTTTTTCATTTCATCAGATTGAATTAAAACTTTTCCAGTTCTAATACCTTTAC
AAATTGAACGATGTGNTTGTTCCATACAACCACCAGCTCTTAAAACAACTAAAGCACAAA
TTCTACTATTTAATTCTTCACCATGATAAAGTGAACCAGTTGGAGTAGTAACAATCTTTT
CAGTGAATGGTAAATAAGTTAAAGCCTCTTCAATGATTAATGAACATAAACGATCAGAAT
AGAAAACGAAATCACCGACTTTGGTATCCTTATTTCTAAGTATTGAAAGCATTGCTTTAA
TTTGATTAGTTTCCTTAATTACATGAATTGAACTTGGTAATTCCAATCCCTCCAAATCCA
ATTGTGCTGTCTTTTCTGGATCAAATCCTCTCTCTTTTAATTTTAATCTAATATGATTTG
TTAATAAATTAATTGCAACAATATTATCTGATCCTCTTGGCACAATAATATCTGCATATT
TTTTTAACTATACATATTCATATAAAAAAATAAATAAAACATTTATTAATATATATATAT
----------TCATCAGATTGAATTAAAACTTTTCCAGTTCTAATACCTTTACAAATTGA
ACGAAGTGGTTGTTCCATACAACCACCAGCTCTTAAAACAACTAAAGCACAAATTCTACT
ATTTAATTCTTCACCATGATAAAGTGAACCAGTTGGAGTAGTAACAATCTTTTCAGTGAA
TGGTAAATAAGTTAAAGCCTCTTCAATGATTAATGAACATAAACGATCAGAATAGAAAAC
GAAATCACCGACTTTGGTATCCTTATTTCTAAGTATTGAAAGCATTGCTTTAATTTGATT
AGTTTCCTTAATTACATGAATTGAACTTGGTAATTCCAATCCCTCCAAATCCAATTGTGC
TGTCTTTTCTGGATCAAATCCTCTCTCTTTTAATTTTAATCTAATATGATTTGTTAATAA
ATTAATTGCAACAATATTATCTGATCCTCTTGGCACAATAATATCTGCATATTTTTTTAA
CTATACATATTCATATAAAAAAATAAATAAAACATTTATTAATATATATATATAAAA
Length of connected seq. 1067
Full length Seq ID SSI709E
Full length Seq. 
>SSI709E.Seq
CATGTGGTTTTTTCATTTCATCAGATTGAATTAAAACTTTTCCAGTTCTAATACCTTTAC
AAATTGAACGANGTGGTTGTTCCATACAACCACCAGCTCTTAAAACAACTAAAGCACAAA
TTCTACTATTTAATTCTTCACCATGATAAAGTGAACCAGTTGGAGTAGTAACAATCTTTT
CAGTGAATGGTAAATAAGTTAAAGCCTCTTCAATGATTAATGAACATAAACGATCAGAAT
AGAAAACGAAATCACCGACTTTGGTATCCTTATTTCTAAGTATTGAAAGCATTGCTTTAA
TTTGATTAGTTTCCTTAATTACATGAATTGAACTTGGTAATTCCAATCCCTCCAAATCCA
ATTGTGCTGTCTTTTCTGGATCAAATCCTCTCTCTTTTAATTTTAATCTAATATGATTTG
TTAATAAATTAATTGCAACAATATTATCTGATCCTCTTGGCACAATAATATCTGCATATT
TTTTTAACTATACATATTCATATAAAAAAATAAATAAAACATTTATTAATATATATATAT
AAAA
Length of full length seq. 544