SSI702 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SSI702
Library	SS (Link to library)
Clone ID	SSI702 (Link to dictyBase)
Atlas ID	-
NBRP ID	G02330
dictyBase ID	DDB0231420
Link to Contig	Contig-U04705-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SS/SSI7-A/SSI702Q.Seq.d/
Representative seq. ID	SSI702E (Link to Original site)
Representative DNA sequence	>SSI702 (SSI702Q) /CSM/SS/SSI7-A/SSI702Q.Seq.d/ AAATCTAAAGGATAAAAATGGAATTTAAAAAGATTTTAATAGTAACTATAATTTTTATTG AAATTGTTTTTGGTGGTGGAAATCCAATTTTCTTAGAAAATAAAATTAGTTTGGGAAAGA ATCAATTACAAGCTAATTATCCAGTATTTGATATTCCAGCTAATTATGTAACAATTTTTA CCTTAAAAATTGATGATTCAATTAAAAATTCAGATATTAATATTAATATTGGTTCACAAA GAATGGTAATGATTTAATTTTATTACAATTTAATGAATTAAATTATGTTCAAGGAAATAC ACCATTCTTAGTTCAACTATGTACAAATTCAGATGAAGAATTATTTAATATAACATGTTT AAATTATGATAATTCTGATTGTAAACTATCAATTTCAGTCAATGCATCAAATTCAAAAAG TTTTTGTTCTCAAACTCTTGATACATCCACTTTTGATGAATTTTTAAAAAACTTTTTCGA TTTTGGTTTCCCACANNTTGGTCAATTTTCTAATGAAAATCAACCACAACAACAACCACA ACAACAACCACCACCACAACAACAACCACCACAGCAAGGACAAGAAGAACAGGTACAAGG ACAACAACAACAACAACAACAAGAACAATCAAATGGAAACCAACAACAACAAANNCAAGA TAATAGTGAAGATAATGGTGAATTAAGACCTCTAATTAAAAGCCAACAACAACAAAATCA ACCAAAATTGAAAATATCAAGATTTATTTATGAAACTAGTAATTGGTTTAATAATTTTTT TAAAAATAATTTTTAAAAAAATAATAATAATAATAAATTTAA
sequence update	1999. 4.21
Translated Amino Acid sequence	nlkdkngikdfnsnynfyncfwwwksnflrknfgkesitslssiysslcnnfy lknfnkfryyYWFTKNGNDLILLQFNELNYVQGNTPFLVQLCTNSDEELFNITCL NYDNSDCKLSISVNASNSKSFCSQTLDTSTFDEFLKNFFDFGFPXXGQFSNENQPQQQPQ QQPPPQQQPPQQGQEEQVQGQQQQQQQEQSNGNQQQQXQDNSEDNGELRPLIKSQQQQNQ PKLKISRFIYETSNWFNNFFKNNF*knnnnnkf
Translated Amino Acid sequence (All Frames)	Frame A: kskgkwnlkrf*lfllklflvveiqfskiklvwerinykliiqylifqlimqfl pklmiqlkiqilililvhkewfnfitiiklcsrkytilsstmykfrriiynmf klfltinfsqcikfkkflfsnsyihfifkklfrfwfptxwsifkstttttt tttttttttttartrrtgtrtttttttrtikwkptttxxr**rwiktsnkptttks tkienikiylnlvffkflkk***i Frame B: nlkdkngikdfnsnynfyncfwwwksnflrknfgkesitslssiysslcnnfy lknfnkfryyYWFTKNGNDLILLQFNELNYVQGNTPFLVQLCTNSDEELFNITCL NYDNSDCKLSISVNASNSKSFCSQTLDTSTFDEFLKNFFDFGFPXXGQFSNENQPQQQPQ QQPPPQQQPPQQGQEEQVQGQQQQQQQEQSNGNQQQQXQDNSEDNGELRPLIKSQQQQNQ PKLKISRFIYETSNWFNNFFKNNFknnnnnkf Frame C: irikmefkkilivtiifieivfgggnpiflenkislgknqlqanypvfdipanyvtift lkiddsiknsdininigsqrmvmifyynlmnimfkeihhsfnyvqiqmknylihv* imiilivnyqfqsmhqiqkvfvlkllihpllmnfktfsilvshxlvnflmkinhnnnhn nnhhhnnnhhskdkknrykdnnnnnnknnqmetnnnkxkiivkimvndllkannnkin qnkyqdlfmklvigliiflkiifkkiiiiinl
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SSI702 (SSI702Q) /CSM/SS/SSI7-A/SSI702Q.Seq.d/ 1019 0.0 SSM679 (SSM679Q) /CSM/SS/SSM6-D/SSM679Q.Seq.d/ 579 e-164 SSC389 (SSC389Q) /CSM/SS/SSC3-D/SSC389Q.Seq.d/ 446 e-124 SSJ870 (SSJ870Q) /CSM/SS/SSJ8-C/SSJ870Q.Seq.d/ 442 e-123 VSK143 (VSK143Q) /CSM/VS/VSK1-B/VSK143Q.Seq.d/ 48 2e-04 SSI265 (SSI265Q) /CSM/SS/SSI2-C/SSI265Q.Seq.d/ 40 0.052 SSC732 (SSC732Q) /CSM/SS/SSC7-B/SSC732Q.Seq.d/ 40 0.052 SFJ305 (SFJ305Q) /CSM/SF/SFJ3-A/SFJ305Q.Seq.d/ 40 0.052 SFG492 (SFG492Q) /CSM/SF/SFG4-D/SFG492Q.Seq.d/ 40 0.052 CHS382 (CHS382Q) /CSM/CH/CHS3-D/CHS382Q.Seq.d/ 40 0.052
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 38 4e-06 12 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 34 4e-05 16 AL844505\|AL844505.1 Plasmodium falciparum chromosome 6. 36 2e-04 15 AC117075\|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 38 3e-04 13 AC116982\|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 38 4e-04 12 BH954227\|BH954227.1 odi91g09.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence. 40 9e-04 4 AC145218\|AC145218.4 Medicago truncatula clone mth2-34l18, WORKING DRAFT SEQUENCE, 9 unordered pieces. 42 0.002 5 AC117070\|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 34 0.002 11 AF165818\|AF165818.4 Guillardia theta nucleomorph chromosome 1, complete sequence. 34 0.002 9 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 40 0.003 12
dna update	2003. 9. 8
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AE014185_221(AE014185\|pid:none) Plasmodium falciparum 3D7 chromo... 36 1.3
protein update	2009. 7. 8
PSORT	psg: 0.73 gvh: 0.46 alm: 0.56 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 52.0 %: nuclear 32.0 %: cytoplasmic 8.0 %: cytoskeletal 8.0 %: mitochondrial >> prediction for SSI702 is nuc
5' end seq. ID	SSI702F
5' end seq.	>SSI702F.Seq AAATCTAAAGGATAAAAATGGAATTTAAAAAGATTTTAATAGTAACTATAATTTTTATTG AAATTGTTTTTGGTGGTGGAAATCCAATTTTCTTAGAAAATAAAATTAGTTTGGGAAAGA ATCAATTACAAGCTAATTATCCAGTATTTGATATTCCAGCTAATTATGTAACAATTTTTA CCTTAAAAATTGATGATTCAATTAAAAATTCAGATATTAATATTAATATTGGTTCACAAA AAGAGAATGGTAATGATTTAATTTTATTACAATTTAATGAATTAAATTATGTTCAAGGAA ATACACCATTCTTAGTTCAACTATGTACAAATTCAGATGAAGAATTATTTAATATAACAT GTTTAAATTATGATAATTCTGATTGTAAACTATCAATTTCAGTCAATGCATCAAATTCAA AAAGTTTTTGTTCTCAAACTCTTGATACATCCACTTTTGATGAATTTTTAAAAAACTTTT TCGATTTTGGTTTCCCACAACTTGGTCAATTTTCTAATGAAAATCAACCACAACAACAAC CACAACAACAACCACCACCACAACAACAACCACCACAGCAAGGACAAGAAGAACAGGTAC AAGGACAACAACAACAACAACAACAAGAACAATCAAATGGAAACCAACAA----------
Length of 5' end seq.	650
3' end seq. ID	SSI702Z
3' end seq.	>SSI702Z.Seq ----------GAATGGTAATGATTTAATTTTATTACAATTTAATGAATTAAATTATGTTC AAGGAAATACACCATTCTTAGTTCAACTATGTACAAATTCAGATGAAGAATTATTTAATA TAACATGTTTAAATTATGATAATTCTGATTGTAAACTATCAATTTCAGTCAATGCATCAA ATTCAAAAAGTTTTTGTTCTCAAACTCTTGATACATCCACTTTTGATGAATTTTTAAAAA ACTTTTTCGATTTTGGTTTCCCACAGGTTGGTCAATTTTCTAATGAAAATCAACCACAAC AACAACCACAACAACAACCACCACCACAACAACAACCACCACAGCAAGGACAAGAAGAAC AGGTACAAGGACAACAACAACAACAACAACAAGAACAATCAAATGGAAACCAACAAANNC AAGATAATAGTGAAGATAATGGTGAATTAAGACCTCTAATTAAAAGCCAACAACAACAAA ATCAACCAAAATTGAAAATATCAAGATTTATTTATGAAACTAGTAATTGGTTTAATAATT TTTTTAAAAATAATTTTTAAAAAAATAATAATAATAATAAATTTAAAAAAAAAAA
Length of 3' end seq.	585
Connected seq. ID	SSI702P
Connected seq.	>SSI702P.Seq AAATCTAAAGGATAAAAATGGAATTTAAAAAGATTTTAATAGTAACTATAATTTTTATTG AAATTGTTTTTGGTGGTGGAAATCCAATTTTCTTAGAAAATAAAATTAGTTTGGGAAAGA ATCAATTACAAGCTAATTATCCAGTATTTGATATTCCAGCTAATTATGTAACAATTTTTA CCTTAAAAATTGATGATTCAATTAAAAATTCAGATATTAATATTAATATTGGTTCACAAA AAGAGAATGGTAATGATTTAATTTTATTACAATTTAATGAATTAAATTATGTTCAAGGAA ATACACCATTCTTAGTTCAACTATGTACAAATTCAGATGAAGAATTATTTAATATAACAT GTTTAAATTATGATAATTCTGATTGTAAACTATCAATTTCAGTCAATGCATCAAATTCAA AAAGTTTTTGTTCTCAAACTCTTGATACATCCACTTTTGATGAATTTTTAAAAAACTTTT TCGATTTTGGTTTCCCACAACTTGGTCAATTTTCTAATGAAAATCAACCACAACAACAAC CACAACAACAACCACCACCACAACAACAACCACCACAGCAAGGACAAGAAGAACAGGTAC AAGGACAACAACAACAACAACAACAAGAACAATCAAATGGAAACCAACAA---------- GAATGGTAATGATTTAATTTTATTACAATTTAATGAATTAAATTATGTTCAAGGAAATAC ACCATTCTTAGTTCAACTATGTACAAATTCAGATGAAGAATTATTTAATATAACATGTTT AAATTATGATAATTCTGATTGTAAACTATCAATTTCAGTCAATGCATCAAATTCAAAAAG TTTTTGTTCTCAAACTCTTGATACATCCACTTTTGATGAATTTTTAAAAAACTTTTTCGA TTTTGGTTTCCCACAGGTTGGTCAATTTTCTAATGAAAATCAACCACAACAACAACCACA ACAACAACCACCACCACAACAACAACCACCACAGCAAGGACAAGAAGAACAGGTACAAGG ACAACAACAACAACAACAACAAGAACAATCAAATGGAAACCAACAAANNCAAGATAATAG TGAAGATAATGGTGAATTAAGACCTCTAATTAAAAGCCAACAACAACAAAATCAACCAAA ATTGAAAATATCAAGATTTATTTATGAAACTAGTAATTGGTTTAATAATTTTTTTAAAAA TAATTTTTAAAAAAATAATAATAATAATAAATTTAAAAAAAAAAA
Length of connected seq.	1235
Full length Seq ID	SSI702E
Full length Seq.	>SSI702E.Seq AAATCTAAAGGATAAAAATGGAATTTAAAAAGATTTTAATAGTAACTATAATTTTTATTG AAATTGTTTTTGGTGGTGGAAATCCAATTTTCTTAGAAAATAAAATTAGTTTGGGAAAGA ATCAATTACAAGCTAATTATCCAGTATTTGATATTCCAGCTAATTATGTAACAATTTTTA CCTTAAAAATTGATGATTCAATTAAAAATTCAGATATTAATATTAATATTGGTTCACAAA GAATGGTAATGATTTAATTTTATTACAATTTAATGAATTAAATTATGTTCAAGGAAATAC ACCATTCTTAGTTCAACTATGTACAAATTCAGATGAAGAATTATTTAATATAACATGTTT AAATTATGATAATTCTGATTGTAAACTATCAATTTCAGTCAATGCATCAAATTCAAAAAG TTTTTGTTCTCAAACTCTTGATACATCCACTTTTGATGAATTTTTAAAAAACTTTTTCGA TTTTGGTTTCCCACANNTTGGTCAATTTTCTAATGAAAATCAACCACAACAACAACCACA ACAACAACCACCACCACAACAACAACCACCACAGCAAGGACAAGAAGAACAGGTACAAGG ACAACAACAACAACAACAACAAGAACAATCAAATGGAAACCAACAACAACAAANNCAAGA TAATAGTGAAGATAATGGTGAATTAAGACCTCTAATTAAAAGCCAACAACAACAAAATCA ACCAAAATTGAAAATATCAAGATTTATTTATGAAACTAGTAATTGGTTTAATAATTTTTT TAAAAATAATTTTTAAAAAAATAATAATAATAATAAATTTAA
Length of full length seq.	822

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas