>SSI696 (SSI696Q) /CSM/SS/SSI6-D/SSI696Q.Seq.d/
CTTCAATAAATTCTGAACAACAACAAGATGAAGAAGAATTAGAAGATGAAAAGAAACAAT
TAAATGATGGCAGTAGTAGTGGTGGTGGTGATAATTTTGAAAATGGTGGTGATCTTGAAA
AAGAAAAAGAAAAAGATGATGATACAGATATTTCAAAAATTGAATCAATTTTAAATGATG
ATAATGATAATGATACTACTTTAAATGAAATTCAACAACAACAACAACAACAGCAACAAC
AACAACAACAACAACCAATTCAACAACAACAACAACAACAACCACCACAAAAGAAAATGG
TAACTAAAATTATTAAAAAGAAAGTAATCGTAAAGAAAACCATTACTGTACCAAAGAAAT
TGGATTCAACAACAACAACATCGTCAGGAACTTCTTCAATAAATTCTGAACAACAACCAA
AACCAATAGAAATAGTACAACCACAAATAGAAGTAACAACAACAACAACAACAACAACAA
ATGAAAAACAAACAGAAGAGGAAGAAAAACAAAAAGAAAAGAAGAAAAAGAAGAAGATGA
AGTACAAAAAAAAACAGAGTTAATACCAACAACAACACCAACACCAACAACAATAATAAC
AACAACACCAAAACAATTTACACCAAATXXXXXXXXXX

SINSEQQQDEEELEDEKKQLNDGSSSGGGDNFENGGDLEKEKEKDDDTDISKIESILNDD
NDNDTTLNEIQQQQQQQQQQQQQQPIQQQQQQQPPQKKMVTKIIKKKVIVKKTITVPKKL
DSTTTTSSGTSSINSEQQPKPIEIVQPQIEVTTTTTTTTNEKQTEEEEKQKEKKKKKKMK
YKKKQS*yqqqhqhqqq**qqhqnnlhq---

Frame A:
lq*ilnnnkmkkn*kmkrnn*mmavvvvvviilkmvvilkkkkkkmmiqifqklnqf*mm
imimill*mkfnnnnnnsnnnnnnnqfnnnnnnnhhkrkw*lkllkrk*s*rkpllyqrn
wiqqqqhrqellq*ilnnnqnq*k*ynhk*k*qqqqqqqqmknkqkrkknkkkrrkrrr*
stkknrvntnnntntnnnnnnntktiytk---


Frame B:
fnkf*tttr*rrirr*ketik*wq**www**f*kww*s*krkrkr**yryfkn*infk**
****yyfk*nsttttttatttttttnstttttttttkengn*ny*kesnrkenhyctkei
gfnnnnivrnffnkf*tttktnrnstttnrsnnnnnnnnk*ktnrrgrktkrkeekeede
vqkkteliptttptpttiitttpkqftp---


Frame C:
SINSEQQQDEEELEDEKKQLNDGSSSGGGDNFENGGDLEKEKEKDDDTDISKIESILNDD
NDNDTTLNEIQQQQQQQQQQQQQQPIQQQQQQQPPQKKMVTKIIKKKVIVKKTITVPKKL
DSTTTTSSGTSSINSEQQPKPIEIVQPQIEVTTTTTTTTNEKQTEEEEKQKEKKKKKKMK
YKKKQS*yqqqhqhqqq**qqhqnnlhq---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI696 (SSI696Q) /CSM/SS/SSI6-D/SSI696Q.Seq.d/                        230   2e-59
VSF660 (VSF660Q) /CSM/VS/VSF6-C/VSF660Q.Seq.d/                         44   0.003
VFN864 (VFN864Q) /CSM/VF/VFN8-C/VFN864Q.Seq.d/                         44   0.003
SHG320 (SHG320Q) /CSM/SH/SHG3-A/SHG320Q.Seq.d/                         44   0.003
CHO303 (CHO303Q) /CSM/CH/CHO3-A/CHO303Q.Seq.d/                         44   0.003
AHA567 (AHA567Q) /CSM/AH/AHA5-C/AHA567Q.Seq.d/                         44   0.003
VFO852 (VFO852Q) /CSM/VF/VFO8-C/VFO852Q.Seq.d/                         42   0.010
SSH566 (SSH566Q) /CSM/SS/SSH5-C/SSH566Q.Seq.d/                         42   0.010
SLD185 (SLD185Q) /CSM/SL/SLD1-D/SLD185Q.Seq.d/                         42   0.010
SLC791 (SLC791Q) /CSM/SL/SLC7-D/SLC791Q.Seq.d/                         42   0.010

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    40  2e-04  6
AC115608|AC115608.2 Dictyostelium discoideum chromosome 2 map 6061442-6097630 strain AX4, complete sequence.    36  0.003  6
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence.    38  0.006  7
AC083798|AC083798.14 Homo sapiens 3q BAC RP11-299J3 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    52  0.006  2
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    36  0.008  7
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    40  0.008  5
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    44  0.008  6
AL929534|AL929534.12 Mouse DNA sequence from clone RP23-275L13 on chromosome 2.    50  0.008  2
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    40  0.014  3
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    36  0.016  5

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 185,268,310

 psg: 0.75  gvh: 0.11  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 32.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSI696 is nuc

>SSI696F.Seq
CTTCAATAAATTCTGAACAACAACAAGATGAAGAAGAATTAGAAGATGAAAAGAAACAAT
TAAATGATGGCAGTAGTAGTGGTGGTGGTGATAATTTTGAAAATGGTGGTGATCTTGAAA
AAGAAAAAGAAAAAGATGATGATACAGATATTTCAAAAATTGAATCAATTTTAAATGATG
ATAATGATAATGATACTACTTTAAATGAAATTCAACAACAACAACAACAACAGCAACAAC
AACAACAACAACAACCAATTCAACAACAACAACAACAACAACCACCACAAAAGAAAATGG
TAACTAAAATTATTAAAAAGAAAGTAATCGTAAAGAAAACCATTACTGTACCAAAGAAAT
TGGATTCAACAACAACAACATCGTCAGGAACTTCTTCAATAAATTCTGAACAACAACCAA
AACCAATAGAAATAGTACAACCACAAATAGAAGTAACAACAACAACAACAACAACAACAA
ATGAAAAACAAACAGAAGAGGAAGAAAAACAAAAAGAAAAGAAGAAAAAGAAGAAGATGA
AGTACAAAAAAAAACAGAGTTAATACCAACAACAACACCAACACCAACAACAATAATAAC
AACAACACCAAAACAATTTACACCAAAT----------