SSI692
Library SS
(Link to library)
Clone ID SSI692
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U05477-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>SSI692 (SSI692Q) /CSM/SS/SSI6-D/SSI692Q.Seq.d/
ATTTTATATATTGTTTTTAATTTTTTTTTATTTTCCAAAATTATGATAAATATCACAGGT
GAAAACGGATACTTTAGAATGAGAAGAAATATTGGCGATAGATGTGGAATTGCCACTGCA
TCATCATACCCAGTCGTAGCTTAAAATCAAATCAATTTTTTATTAAATTTTAAATTAAAG
TAACAAGATCGATACAACATTAGTTAAATTAATTTAATCAATTTTAATTTTATAATAAAT
TTTTAACAATTATCATCAAACAAAAAAAAAAAAAAAAXXXXXXXXXX
sequence update 1998.11.12
Translated Amino Acid sequence
ILYIVFNFFLFSKIMINITGENGYFRMRRNIGDRCGIATASSYPVVA*nqinfllnfklk
*qdrynis*inlinfnfiinf*qlssnkkkkk---


Translated Amino Acid sequence (All Frames)
Frame A:
ILYIVFNFFLFSKIMINITGENGYFRMRRNIGDRCGIATASSYPVVA*nqinfllnfklk
*qdrynis*inlinfnfiinf*qlssnkkkkk---


Frame B:
fyilfliffyfpkl**isqvktdtle*eeilaidvelplhhhtqs*lkiksify*iln*s
nkidttlvkli*silil**ifnnyhqtkkkk---


Frame C:
fiycf*fffifqnydkyhr*kril*nekkywr*mwnchciiipsrslksnqffikf*ikv
trsiqh*ln*fnqf*fynkfltiiikqkkkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSI692 (SSI692Q) /CSM/SS/SSI6-D/SSI692Q.Seq.d/ 325 2e-88
SSK672 (SSK672Q) /CSM/SS/SSK6-C/SSK672Q.Seq.d/ 42 0.004
VHL469 (VHL469Q) /CSM/VH/VHL4-C/VHL469Q.Seq.d/ 40 0.018
VHF813 (VHF813Q) /CSM/VH/VHF8-A/VHF813Q.Seq.d/ 40 0.018
SSJ121 (SSJ121Q) /CSM/SS/SSJ1-A/SSJ121Q.Seq.d/ 40 0.018
SSE859 (SSE859Q) /CSM/SS/SSE8-C/SSE859Q.Seq.d/ 40 0.018
SSB409 (SSB409Q) /CSM/SS/SSB4-A/SSB409Q.Seq.d/ 40 0.018
SSG323 (SSG323Q) /CSM/SS/SSG3-A/SSG323Q.Seq.d/ 38 0.069
VSJ673 (VSJ673Q) /CSM/VS/VSJ6-D/VSJ673Q.Seq.d/ 36 0.27
VHI254 (VHI254Q) /CSM/VH/VHI2-C/VHI254Q.Seq.d/ 36 0.27

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U97012|U97012.2 Caenorhabditis elegans cosmid C04E6, complete sequence. 50 0.079 2
BW298214|BW298214.1 Ciona intestinalis cDNA, clone:cinc001p15, 5' end, single read. 46 0.23 1
CD419461|CD419461.1 rj11b05.y1 Meloidogyne chitwoodi egg pAMP1 v1 Meloidogyne chitwoodi cDNA 5' similar to TR:Q9VTG4 Q9VTG4 CG6210 PROTEIN. ;, mRNA sequence. 46 0.23 1
Z81094|Z81094.1 Caenorhabditis elegans cosmid F58G11. 46 0.23 1
AY242996|AY242996.1 Antheraea pernyi mitochondrion, complete genome. 34 0.24 3
Z83124|Z83124.1 Caenorhabditis elegans DNA *** SEQUENCING IN PROGRESS *** from clone T08E3. 44 0.26 2
AE002105|AE002105.1 Ureaplasma urealyticum section 6 of 59 of the complete genome. 40 0.32 2
AC114296|AC114296.2 Homo sapiens chromosome 5 clone RP11-119J18, complete sequence. 44 0.90 1
U35786|U35786.1 Anopheles melas 12S ribosomal RNA, D-loop, and tRNA-Ile mitochondrial genes, partial sequence. 44 0.90 1
AL627168|AL627168.10 Zebrafish DNA sequence from clone RP71-1M12 Contains a gene for a novel trypsin inhibitor, a novel gene similar to human GDAP1 (ganglioside-induced differentiation-associated protein 1), a gene for a novel protein similar to vertebrate junctophilins and three CpG islands. 44 0.90 1
dna update 2003. 8. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116963_56(AC116963|pid:none) Dictyostelium discoideum chromoso... 43 0.004
DQ356054_1(DQ356054|pid:none) Tenebrio molitor clone AM4-22 puta... 42 0.007
DQ356053_1(DQ356053|pid:none) Tenebrio molitor clone AM3-32 puta... 42 0.009
Y09499_1(Y09499|pid:none) H.glycines mRNA for cathepsin S-like c... 42 0.009
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs... 41 0.015
AF239265_1(AF239265|pid:none) Fasciola gigantica cathepsin L (ca... 41 0.015
AY345219_1(AY345219|pid:none) Acanthoscelides obtectus cathepsin... 41 0.015
AB306512_1(AB306512|pid:none) Plautia stali mRNA for cathepsin L... 40 0.019
AJ605118_1(AJ605118|pid:none) Platichthys flesus partial mRNA fo... 40 0.033
CQ840838_1(CQ840838|pid:none) Sequence 8 from Patent WO200405881... 39 0.043
protein update 2009. 6.13
PSORT

psg: 0.95 gvh: 0.48 alm: 0.33 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SSI692 is cyt

5' end seq. ID SSI692F
5' end seq.
>SSI692F.Seq
ATTTTATATATTGTTTTTAATTTTTTTTTATTTTCCAAAATTATGATAAATATCACAGGT
GAAAACGGATACTTTAGAATGAGAAGAAATATTGGCGATAGATGTGGAATTGCCACTGCA
TCATCATACCCAGTCGTAGCTTAAAATCAAATCAATTTTTTATTAAATTTTAAATTAAAG
TAACAAGATCGATACAACATTAGTTAAATTAATTTAATCAATTTTAATTTTATAATAAAT
TTTTAACAATTATCATCAAACAAAAAAAAAAAAAAAA
Length of 5' end seq. 277
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -