>SSI687 (SSI687Q) /CSM/SS/SSI6-D/SSI687Q.Seq.d/
XXXXXXXXXXATAATGGTAAATTTTAAAATGACTGATTTGAAAATTACATTAGTTAATGA
AGATGGGGAATCCACAATAAGTGGTAAAGGTCATCCATTACCAGCTCCCCTAATATTTCC
TCCAATATATTGTTTCTGTTTTATCCAATATAAAACTGAAGGTAAACTTTGGGACAAAAA
TGATTTTCAGATAAAATCAGGTAAAATTGAATTCGGCGGAGAAGAATATGATATTACTGA
ATCTAAAGGCACATGGAGTAAAGATGATGAAGAAAACCACATCAAAGTTAGTTTACATCT
AATTGTACCACCAAAAAAAATTTTCCAAAAAAATTTTTAGATCTCAAAAACAGATACAAT
GAAAAACAAAGAAATAAAAAATTTGCATTAATCTTATTTTCATCATAAATATAATATAGA
ATAAAATTTTATAAATTTATTTATTTAGATTAAAATTTTTAAATTTTGTCTCAAAATAAA
AAAAAAAAAAAAAAAA

---MVNFKMTDLKITLVNEDGESTISGKGHPLPAPLIFPPIYCFCFIQYKTEGKLWDKND
FQIKSGKIEFGGEEYDITESKGTWSKDDEENHIKVSLHLIVPPKKIFQKNF*isktdtmk
nkeiknlh*syfhhkynie*nfinlfi*ikifkfclkikkkkkk

Frame A:
---*w*ilk*li*klh*lmkmgnpq*vvkvihyqlp*yflqyivsvlsniklkvnfgtkm
ifr*nqvklnsaeknmillnlkahgvkmmkkttsklvyi*lyhqkkfskkifrsqkqiq*
ktkk*kicinlifiinii*nkil*iylfrlkflnfvsk*kkkkk


Frame B:
---ngkf*nd*fenyis**rwgihnkw*rssitsspnissnilflfypi*n*r*tlgqk*
fsdkir*n*irrrri*yy*i*rhme*r**rkphqs*ftsncttkknfpkkfldlknryne
kqrnkkfalilfss*i*yrikfykfiyld*nf*ilsqnkkkkkk


Frame C:
---MVNFKMTDLKITLVNEDGESTISGKGHPLPAPLIFPPIYCFCFIQYKTEGKLWDKND
FQIKSGKIEFGGEEYDITESKGTWSKDDEENHIKVSLHLIVPPKKIFQKNF*isktdtmk
nkeiknlh*syfhhkynie*nfinlfi*ikifkfclkikkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI687 (SSI687Q) /CSM/SS/SSI6-D/SSI687Q.Seq.d/                        599   e-170
VSH317 (VSH317Q) /CSM/VS/VSH3-A/VSH317Q.Seq.d/                        569   e-161
VSA227 (VSA227Q) /CSM/VS/VSA2-B/VSA227Q.Seq.d/                        569   e-161
VHQ253 (VHQ253Q) /CSM/VH/VHQ2-C/VHQ253Q.Seq.d/                        569   e-161
VFK101 (VFK101Q) /CSM/VF/VFK1-A/VFK101Q.Seq.d/                        569   e-161
SSM842 (SSM842Q) /CSM/SS/SSM8-B/SSM842Q.Seq.d/                        569   e-161
SSL312 (SSL312Q) /CSM/SS/SSL3-A/SSL312Q.Seq.d/                        569   e-161
SSK747 (SSK747Q) /CSM/SS/SSK7-B/SSK747Q.Seq.d/                        569   e-161
SSI182 (SSI182Q) /CSM/SS/SSI1-D/SSI182Q.Seq.d/                        569   e-161
SSF552 (SSF552Q) /CSM/SS/SSF5-C/SSF552Q.Seq.d/                        569   e-161

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

M27588|M27588.1 Dictyostelium discoideum CsbA (csbA) and CsbB (csbB) genes, complete cds.   438  e-153  3
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   339  e-152  4
AC141766|AC141766.1 Apis mellifera clone CH224-60D6, WORKING DRAFT SEQUENCE, 19 unordered pieces.    48  0.056  2
AC117974|AC117974.6 Rattus norvegicus clone CH230-423J24, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    46  0.40  1
AG210174|AG210174.1 Oryza sativa (japonica cultivar-group) DNA, clone:NF0007_0_103_1A, 3' flanking sequence of Tos17 insertion in rice strain NF0007.    40  0.92  2
AG210176|AG210176.1 Oryza sativa (japonica cultivar-group) DNA, clone:NF0007_0_402_1A, 3' flanking sequence of Tos17 insertion in rice strain NF0007.    40  1.2  2
AL845431|AL845431.6 Mouse DNA sequence from clone RP23-263K14 on chromosome X.    44  1.6  1
AZ281954|AZ281954.1 RPCI-23-122J4.TV RPCI-23 Mus musculus genomic clone RPCI-23-122J4, DNA sequence.    44  1.6  1
AC107065|AC107065.4 Bos taurus clone rp42-513g13, complete sequence.    44  1.6  1
CC304000|CC304000.1 CH261-89M10_Sp6.1 CH261 Gallus gallus genomic clone CH261-89M10, DNA sequence.    44  1.6  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P16643) RecName: Full=Glycoprotein 24B;          Short=gp24B; A...   221   9e-57
(P16642) RecName: Full=Glycoprotein 24A;          Short=gp24A; A...   181   8e-45
(Q558X5) RecName: Full=Contact site B protein C;  &AC117075_12(A...   122   5e-27
(Q556L8) RecName: Full=Uncharacterized protein csb family protei...    89   7e-17
(Q54EJ7) RecName: Full=Uncharacterized protein csb family protei...    75   8e-13
(Q55B72) RecName: Full=Uncharacterized protein csb family protei...    74   2e-12
(Q55BG7) RecName: Full=Uncharacterized protein csb family protei...    71   2e-11
AC117075_43(AC117075|pid:none) Dictyostelium discoideum chromoso...    39   0.087
AM910988_160(AM910988|pid:none) Plasmodium knowlesi strain H chr...    33   4.8
EU856396_6(EU856396|pid:none) Unionicola foili mitochondrion, co...    32   8.2

 psg: 0.64  gvh: 0.48  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSI687 is cyt

>SSI687Z.Seq
----------ATAATGGTAAATTTTAAAATGACTGATTTGAAAATTACATTAGTTAATGA
AGATGGGGAATCCACAATAAGTGGTAAAGGTCATCCATTACCAGCTCCCCTAATATTTCC
TCCAATATATTGTTTCTGTTTTATCCAATATAAAACTGAAGGTAAACTTTGGGACAAAAA
TGATTTTCAGATAAAATCAGGTAAAATTGAATTCGGCGGAGAAGAATATGATATTACTGA
ATCTAAAGGCACATGGAGTAAAGATGATGAAGAAAACCACATCAAAGTTAGTTTACATCT
AATTGTACCACCAAAAAAAATTTTCCAAAAAAATTTTTAGATCTCAAAAACAGATACAAT
GAAAAACAAAGAAATAAAAAATTTGCATTAATCTTATTTTCATCATAAATATAATATAGA
ATAAAATTTTATAAATTTATTTATTTAGATTAAAATTTTTAAATTTTGTCTCAAAATAAA
AAAAAAAAAAAAAAAA