>SSI681 (SSI681Q) /CSM/SS/SSI6-D/SSI681Q.Seq.d/
GGAATTTCTTGAAGATTTAACAAATGCAACAAATGAAATGATTAAAGCAGGTGATAAAAA
TGGTGATAACCAATTATCAAAGAAAGAACTTTATGAATTGTTCAAGAAATGCAAATACCC
AAACCCAACCTTGGTAACCAATTCATTATTAGAACTATTTGATCTTGACAAAGATGGAAA
ACTTTCGGTTAATGAAGTTAAAACTGCATTACTTGTAGATTATATTATTGAAGCTGAAAC
TTGTTTAAAAAAATTCGTTGATTCTATTTTTAAGGCTGATTCAAATAAAGATAATAAAAT
TACTTGGGATGAGGCCAGACAATTTTTTTGTTACTAGTGGTTCAAATGAAGCTCAAGCTA
AAGTCTTTGCCAACTCAATGTTTGAAGATGTGGATTCTGATGATGACAAATGTATTACAC
GTGAAGAACTTAGAGAATATGCCATTGAATATTATGAAATTTATCCAACTGAATAATTAT
TTCCATAAAAATAATCTCAATTTAAGTCAGTCTTGAAAAAATAAATAAAAAAATAAAAAC
TTTATTTAATTTTATTTAAAAAAAAAAAA

EFLEDLTNATNEMIKAGDKNGDNQLSKKELYELFKKCKYPNPTLVTNSLLELFDLDKDGK
LSVNEVKTALLVDYIIEAETCLKKFVDSIFKADSNKDNKITWDEARQFFCY*wfk*sss*
slcqlnv*rcgf***qmyyt*rt*rich*il*nlsn*iiisikiisi*vslekinkkikt
lfnfi*kkk

Frame A:
gis*rfnkcnk*nd*sr**kw**piikertl*ivqemqipkpnlgnqfiirti*s*qrwk
tfg**s*ncitcrlyy*s*nlfkkir*fyf*g*fk*r**nylg*gqtiflllvvqmklkl
kslptqclkmwilmmtnvlhvknlenmplnimkfiqlnnyfhknnlnlsqs*knk*knkn
fi*fylkkk


Frame B:
EFLEDLTNATNEMIKAGDKNGDNQLSKKELYELFKKCKYPNPTLVTNSLLELFDLDKDGK
LSVNEVKTALLVDYIIEAETCLKKFVDSIFKADSNKDNKITWDEARQFFCY*wfk*sss*
slcqlnv*rcgf***qmyyt*rt*rich*il*nlsn*iiisikiisi*vslekinkkikt
lfnfi*kkk


Frame C:
nflki*qmqqmk*lkqvikmvitnyqrknfmncsrnantqtqpw*pihy*nyliltkmen
frlmklklhyl*iillklklv*knslilflrliqikiikllgmrpdnffvtsgsneaqak
vfansmfedvdsdddkcitreelreyaieyyeiypte*lfp*k*sqfksvlkk*ikk*kl
ylilfkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI681 (SSI681Q) /CSM/SS/SSI6-D/SSI681Q.Seq.d/                        938   0.0
SSM568 (SSM568Q) /CSM/SS/SSM5-C/SSM568Q.Seq.d/                        928   0.0
SSL660 (SSL660Q) /CSM/SS/SSL6-C/SSL660Q.Seq.d/                        928   0.0
SSK828 (SSK828Q) /CSM/SS/SSK8-B/SSK828Q.Seq.d/                        928   0.0
SSK762 (SSK762Q) /CSM/SS/SSK7-C/SSK762Q.Seq.d/                        928   0.0
SSK659 (SSK659Q) /CSM/SS/SSK6-C/SSK659Q.Seq.d/                        928   0.0
SSK380 (SSK380Q) /CSM/SS/SSK3-D/SSK380Q.Seq.d/                        928   0.0
SSJ879 (SSJ879Q) /CSM/SS/SSJ8-D/SSJ879Q.Seq.d/                        928   0.0
SSJ794 (SSJ794Q) /CSM/SS/SSJ7-D/SSJ794Q.Seq.d/                        928   0.0
SSJ545 (SSJ545Q) /CSM/SS/SSJ5-B/SSJ545Q.Seq.d/                        928   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AJ297597|AJ297597.1 Dictyostelium discoideum mRNA for calcium-binding protein 4a (cbpD1  gene).   488  0.0  3
AJ297598|AJ297598.1 Dictyostelium discoideum cbpD2 gene for calcium-binding protein 4b,  exons 1-4.   329  0.0  6
AW332146|AW332146.1 S4G1 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    50  0.030  1
AC139045|AC139045.5 Mus musculus chromosome 7 clone RP23-466H15 map 7, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44  0.086  2
AC110303|AC110303.5 Rattus norvegicus clone CH230-223E3, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    38  0.34  3
CC552658|CC552658.1 CH240_438B9.T7 CHORI-240 Bos taurus genomic clone CH240_438B9, genomic survey sequence.    46  0.47  1
AE002104|AE002104.1 Ureaplasma urealyticum section 5 of 59 of the complete genome.    36  0.84  3
AL596323|AL596323.10 Human DNA sequence from clone RP11-83O12 on chromosome 9p13.3-21.    38  0.85  3
AC121452|AC121452.4 Rattus norvegicus clone CH230-131P14, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    44  1.8  1
AE017008|AE017008.1 Bacillus cereus ATCC 14579 section 11 of 18 of the complete genome.    44  1.8  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54RF4) RecName: Full=Calcium-binding protein 4a;                    221   1e-81
AJ297597_1(AJ297597|pid:none) Dictyostelium discoideum mRNA for ...   221   5e-81
(Q966Q9) RecName: Full=Calcium-binding protein H; AltName: Full=...    48   2e-04
AY655131_1(AY655131|pid:none) Dictyostelium discoideum NCS-1/fre...    40   3e-04
(P54653) RecName: Full=Calcium-binding protein 2;  &S62881(S6288...    44   0.002
CP001150_1751(CP001150|pid:none) Rhodobacter sphaeroides KD131 c...    43   0.007
CP000577_2056(CP000577|pid:none) Rhodobacter sphaeroides ATCC 17...    43   0.007
AE014186_83(AE014186|pid:none) Plasmodium falciparum 3D7 chromos...    42   0.015
AF202094_1(AF202094|pid:none) Plasmodium falciparum isolate FCC1...    42   0.015
CR932337_1(CR932337|pid:none) Paramecium tetraurelia macronuclea...    41   0.026

 psg: 0.75  gvh: 0.25  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSI681 is nuc

>SSI681E.Seq
GGAATTTCTTGAAGATTTAACAAATGCAACAAATGAAATGATTAAAGCAGGTGATAAAAA
TGGTGATAACCAATTATCAAAGAAAGAACTTTATGAATTGTTCAAGAAATGCAAATACCC
AAACCCAACCTTGGTAACCAATTCATTATTAGAACTATTTGATCTTGACAAAGATGGAAA
ACTTTCGGTTAATGAAGTTAAAACTGCATTACTTGTAGATTATATTATTGAAGCTGAAAC
TTGTTTAAAAAAATTCGTTGATTCTATTTTTAAGGCTGATTCAAATAAAGATAATAAAAT
TACTTGGGATGAGGCCAGACAATTTTTTTGTTACTAGTGGTTCAAATGAAGCTCAAGCTA
AAGTCTTTGCCAACTCAATGTTTGAAGATGTGGATTCTGATGATGACAAATGTATTACAC
GTGAAGAACTTAGAGAATATGCCATTGAATATTATGAAATTTATCCAACTGAATAATTAT
TTCCATAAAAATAATCTCAATTTAAGTCAGTCTTGAAAAAATAAATAAAAAAATAAAAAC
TTTATTTAATTTTATTTAAAAAAAAAAAA