>SSI678 (SSI678Q) /CSM/SS/SSI6-D/SSI678Q.Seq.d/
XXXXXXXXXXTCACATTCCTATGCAACTCTCTCAAATGTTTAAGCAGTCTTTTCCCAAAA
AAAATATTTAAAAAAAAAAAAAAAAGAAAAAAAAAAAATATTAAAATATTTTTTTTAAAA
TCAATTTTAAATATAAATAATAATGTTTTTTTTTTTTTTATAAAAAAAAGAAAGAAAAAA
AGAAAAAAAAAAAAAAAAGAAAAAAAGAATTTAAAAAAAAAAAAAAAATAGAAAAAAAAA
AGTTAAAGATGTAATGGTAAAACCAAAGTAGAATGGAAATCCAAAAAAAGATCTTTATAA
ATTGCCACTATAATCAATGTATAGATATTGTTCCGTCTGTGTCTATGCTGTTAGGTCCAG
TTTGCTCTTTAGTTACTTTAATTTAAATCTATATTGTAATTTTTAT

---TFLCNSLKCLSSLFPKKIFKKKKKRKKKNIKIFFLKSILNINNNVFFFFIKKRKKKR
KKKKKEKKNLKKKKK*kkks*rcngktkvewkskkrsl*iatiinv*ilfrlclcc*vqf
al*ll*fksil*fl

Frame A:
---hipmqlsqmfkqsfpkkni*kkkkkkkkky*niffkinfkyk**cffffykkkkekk
kkkkkrkkefkkkkkiekkklkm*w*nqsrmeiqkkifinchynqcidivpsvsmllgpv
cslvtli*iyivif


Frame B:
---TFLCNSLKCLSSLFPKKIFKKKKKRKKKNIKIFFLKSILNINNNVFFFFIKKRKKKR
KKKKKEKKNLKKKKK*kkks*rcngktkvewkskkrsl*iatiinv*ilfrlclcc*vqf
al*ll*fksil*fl


Frame C:
---hsyatlsnv*avfsqkkylkkkkkekkkilkyff*nqf*i*iimffffl*kkerkke
kkkkkkkri*kkkknrkkkvkdvmvkpk*ngnpkkdlyklpl*smyrycsvcvyavrssl
lfsyfnlnlycnfy

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI875 (SSI875Q) /CSM/SS/SSI8-D/SSI875Q.Seq.d/                        285   3e-76
SSI678 (SSI678Q) /CSM/SS/SSI6-D/SSI678Q.Seq.d/                        285   3e-76
SSG102 (SSG102Q) /CSM/SS/SSG1-A/SSG102Q.Seq.d/                        280   2e-74
SSF824 (SSF824Q) /CSM/SS/SSF8-A/SSF824Q.Seq.d/                        280   2e-74
SSF782 (SSF782Q) /CSM/SS/SSF7-D/SSF782Q.Seq.d/                        280   2e-74
SSM852 (SSM852Q) /CSM/SS/SSM8-C/SSM852Q.Seq.d/                        278   6e-74
SSM834 (SSM834Q) /CSM/SS/SSM8-B/SSM834Q.Seq.d/                        278   6e-74
SSM790 (SSM790Q) /CSM/SS/SSM7-D/SSM790Q.Seq.d/                        278   6e-74
SSM712 (SSM712Q) /CSM/SS/SSM7-A/SSM712Q.Seq.d/                        278   6e-74
SSM626 (SSM626Q) /CSM/SS/SSM6-B/SSM626Q.Seq.d/                        278   6e-74

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

D16417|D16417.1 Dictyostelium discoideum mRNA.                   224  e-109  4
CC245494|CC245494.1 CH261-54C11_Sp6.1 CH261 Gallus gallus genomic clone CH261-54C11, DNA sequence.    56  3e-04  1
L06178|L06178.1 Apis mellifera ligustica complete mitochondrial genome.    38  0.003  6
BM094544|BM094544.1 saj17c12.y1 Gm-c1066 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1066-2832 5', mRNA sequence.    52  0.005  1
AX348899|AX348899.1 Sequence 357 from Patent WO0202807.           34  0.023  4
AX344490|AX344490.1 Sequence 337 from Patent WO0200926.           34  0.023  4
AB030651|AB030651.1 Felis catus mRNA for B-lymphocyte activation antigen B7-1 (CD80), complete cds.    38  0.049  2
BH564896|BH564896.1 BOHIQ68TR BOHI Brassica oleracea genomic clone BOHIQ68, DNA sequence.    48  0.083  1
L43882|L43882.1 Ixodes scapularis (isolate 2, strain Georgia 2) mitochondrial 12S ribosomal RNA (12S rDNA) gene fragment.    48  0.083  1
AE007544|AE007544.1 Clostridium acetobutylicum ATCC824 section 32 of 356 of the complete genome.    44  0.18  2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 258,673,167

 psg: 0.79  gvh: 0.47  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.46  mip: 0.00
 nuc: 1.43  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SSI678 is nuc

>SSI678Z.Seq
----------TCACATTCCTATGCAACTCTCTCAAATGTTTAAGCAGTCTTTTCCCAAAA
AAAATATTTAAAAAAAAAAAAAAAAGAAAAAAAAAAAATATTAAAATATTTTTTTTAAAA
TCAATTTTAAATATAAATAATAATGTTTTTTTTTTTTTTATAAAAAAAAGAAAGAAAAAA
AGAAAAAAAAAAAAAAAAGAAAAAAAGAATTTAAAAAAAAAAAAAAAATAGAAAAAAAAA
AGTTAAAGATGTAATGGTAAAACCAAAGTAGAATGGAAATCCAAAAAAAGATCTTTATAA
ATTGCCACTATAATCAATGTATAGATATTGTTCCGTCTGTGTCTATGCTGTTAGGTCCAG
TTTGCTCTTTAGTTACTTTAATTTAAATCTATATTGTAATTTTTAT